RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 FMC1Q96HJ9 113 aa9.46□□□□□ -0.9
USP1-201ENST00000339950 VGLL1Q99990 258 aa9.46□□□□□ -0.9
USP1-201ENST00000339950 HIST1H1AQ02539 215 aaPredicted RBP9.45□□□□□ -0.9
USP1-201ENST00000339950 BEX4Q9NWD9 120 aaPredicted RBP9.45□□□□□ -0.9
USP1-201ENST00000339950 TRAV26-2A0A0B4J265 109 aa9.45□□□□□ -0.9
USP1-201ENST00000339950 CLEC2AQ6UVW9 174 aa9.45□□□□□ -0.9
USP1-201ENST00000339950 FOXC2Q99958 501 aa9.45□□□□□ -0.9
USP1-201ENST00000339950 OTORQ9NRC9 128 aa9.45□□□□□ -0.9
USP1-201ENST00000339950 IGLV2-23P01705 113 aa9.45□□□□□ -0.9
USP1-201ENST00000339950 PAX1P15863 534 aa9.45□□□□□ -0.9
USP1-201ENST00000339950 KIR3DS1Q14943 382 aa9.45□□□□□ -0.9
USP1-201ENST00000339950 IGF2BP2-AS1Q96M15 143 aa9.45□□□□□ -0.9
USP1-201ENST00000339950 ST20Q9HBF5 79 aa9.45□□□□□ -0.9
USP1-201ENST00000339950 EMP1P54849 157 aa9.44□□□□□ -0.9
USP1-201ENST00000339950 LOXL1Q08397 574 aaPredicted RBP9.44□□□□□ -0.9
USP1-201ENST00000339950 NUP37Q8NFH4 326 aa9.44□□□□□ -0.9
USP1-201ENST00000339950 MYOZ3Q8TDC0 251 aa9.44□□□□□ -0.9
USP1-201ENST00000339950 MRPS16Q9Y3D3 137 aaKnown RBP9.44□□□□□ -0.9
USP1-201ENST00000339950 FAM74A4Q5TZK3 123 aa9.44□□□□□ -0.9
USP1-201ENST00000339950 DPF1Q92782 380 aa9.44□□□□□ -0.9
USP1-201ENST00000339950 TRGV9Q99603 122 aa9.44□□□□□ -0.9
USP1-201ENST00000339950 PTPRBP23467 1997 aa9.44□□□□□ -0.9
USP1-201ENST00000339950 SPENQ96T58 3664 aaKnown RBP9.43□□□□□ -0.9
USP1-201ENST00000339950 SH2D1AO60880 128 aa9.43□□□□□ -0.9
USP1-201ENST00000339950 NDUFA3O95167 84 aa9.43□□□□□ -0.9
USP1-201ENST00000339950 POU2AF1Q16633 256 aa9.43□□□□□ -0.9
USP1-201ENST00000339950 FER1L6-AS1Q8NA97 138 aa9.43□□□□□ -0.9
USP1-201ENST00000339950 PRRC2AP48634 2157 aaKnown RBP9.43□□□□□ -0.9
USP1-201ENST00000339950 PSG3Q16557 428 aa9.43□□□□□ -0.9
USP1-201ENST00000339950 C5orf64Q2M2E5 130 aa9.43□□□□□ -0.9
USP1-201ENST00000339950 SAMD5Q5TGI4 173 aa9.43□□□□□ -0.9
USP1-201ENST00000339950 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.43□□□□□ -0.9
USP1-201ENST00000339950 SIGMAR1Q99720 223 aa9.43□□□□□ -0.9
USP1-201ENST00000339950 ETDBQ3ZM63 59 aa9.43□□□□□ -0.9
USP1-201ENST00000339950 GTSCR1Q86UQ5 136 aa9.43□□□□□ -0.9
USP1-201ENST00000339950 BPESC1Q9GZL8 116 aa9.43□□□□□ -0.9
USP1-201ENST00000339950 TMEM78Q5T7P6 136 aa9.42□□□□□ -0.9
USP1-201ENST00000339950 CHODLQ9H9P2 273 aa9.42□□□□□ -0.9
USP1-201ENST00000339950 TOMM40O96008 361 aa9.42□□□□□ -0.9
USP1-201ENST00000339950 SRSF8Q9BRL6 282 aaKnown RBP9.42□□□□□ -0.9
USP1-201ENST00000339950 K7EP13 123 aa9.42□□□□□ -0.9
USP1-201ENST00000339950 TRGV3P03979 118 aa9.42□□□□□ -0.9
USP1-201ENST00000339950 CDKN1BP46527 198 aa9.42□□□□□ -0.9
USP1-201ENST00000339950 ATP5IP56385 69 aaPredicted RBP9.42□□□□□ -0.9
USP1-201ENST00000339950 MRPL16Q9NX20 251 aaKnown RBP9.42□□□□□ -0.9
USP1-201ENST00000339950 LINC01548A6NM66 108 aa9.41□□□□□ -0.9
USP1-201ENST00000339950 TMEM238C9JI98 176 aa9.41□□□□□ -0.9
USP1-201ENST00000339950 LEPP41159 167 aa9.41□□□□□ -0.9
USP1-201ENST00000339950 SPATA12Q7Z6I5 190 aa9.41□□□□□ -0.9
USP1-201ENST00000339950 ZNF491Q8N8L2 437 aa9.41□□□□□ -0.9
USP1-201ENST00000339950 DOPEY1Q5JWR5 2465 aa9.41□□□□□ -0.9
USP1-201ENST00000339950 AMTNQ6UX39 209 aa9.41□□□□□ -0.9
USP1-201ENST00000339950 IGFL3Q6UXB1 125 aa9.41□□□□□ -0.9
USP1-201ENST00000339950 TRBV19A0A075B6N1 114 aa9.41□□□□□ -0.9
USP1-201ENST00000339950 TRAV40A0A0B4J280 105 aa9.41□□□□□ -0.9
USP1-201ENST00000339950 ORMDL3Q8N138 153 aa9.41□□□□□ -0.9
USP1-201ENST00000339950 FASNP49327 2511 aaKnown RBP9.41□□□□□ -0.9
USP1-201ENST00000339950 GP9P14770 177 aa9.4□□□□□ -0.9
USP1-201ENST00000339950 BVES-AS1Q5T3Y7 98 aa9.4□□□□□ -0.9
USP1-201ENST00000339950 VKORC1Q9BQB6 163 aa9.4□□□□□ -0.9
USP1-201ENST00000339950 PRAC2D3DTV9 90 aa9.4□□□□□ -0.9
USP1-201ENST00000339950 HIST2H2BDQ6DRA6 164 aa9.4□□□□□ -0.9
USP1-201ENST00000339950 NEGR1Q7Z3B1 354 aa9.4□□□□□ -0.9
USP1-201ENST00000339950 DYNAPQ8N1N2 210 aa9.4□□□□□ -0.9
USP1-201ENST00000339950 MRPL27Q9P0M9 148 aaKnown RBP9.4□□□□□ -0.9
USP1-201ENST00000339950 SOX21Q9Y651 276 aaPredicted RBP9.4□□□□□ -0.9
USP1-201ENST00000339950 IGHV2-70DA0A0C4DH43 119 aa9.4□□□□□ -0.9
USP1-201ENST00000339950 K7EIM0 57 aa9.4□□□□□ -0.9
USP1-201ENST00000339950 PRSS2P07478 247 aa9.4□□□□□ -0.9
USP1-201ENST00000339950 C1RLQ9NZP8 487 aa9.4□□□□□ -0.9
USP1-201ENST00000339950 F6UB75 175 aa9.39□□□□□ -0.91
USP1-201ENST00000339950 K7ERJ3 54 aa9.39□□□□□ -0.91
USP1-201ENST00000339950 ATP6V0E1O15342 81 aa9.39□□□□□ -0.91
USP1-201ENST00000339950 ESDP10768 282 aa9.39□□□□□ -0.91
USP1-201ENST00000339950 SAA4P35542 130 aa9.39□□□□□ -0.91
USP1-201ENST00000339950 IL17RELQ6ZVW7 336 aa9.39□□□□□ -0.91
USP1-201ENST00000339950 C11orf44Q8N8P7 122 aa9.39□□□□□ -0.91
USP1-201ENST00000339950 IFI27L1Q96BM0 104 aa9.39□□□□□ -0.91
USP1-201ENST00000339950 MAP1LC3AQ9H492 121 aa9.39□□□□□ -0.91
USP1-201ENST00000339950 CD5LO43866 347 aa9.39□□□□□ -0.91
USP1-201ENST00000339950 DLX6P56179 175 aa9.39□□□□□ -0.91
USP1-201ENST00000339950 PAX2Q02962 417 aa9.39□□□□□ -0.91
USP1-201ENST00000339950 CR1LQ2VPA4 569 aa9.39□□□□□ -0.91
USP1-201ENST00000339950 CCDC144NLQ6NUI1 221 aa9.39□□□□□ -0.91
USP1-201ENST00000339950 SHANK2-AS3Q9BTD1 123 aa9.39□□□□□ -0.91
USP1-201ENST00000339950 TEX22C9J3V5 150 aa9.39□□□□□ -0.91
USP1-201ENST00000339950 FNDC10F2Z333 226 aa9.39□□□□□ -0.91
USP1-201ENST00000339950 PET117Q6UWS5 81 aa9.39□□□□□ -0.91
USP1-201ENST00000339950 NRGNQ92686 78 aa9.39□□□□□ -0.91
USP1-201ENST00000339950 NDUFS8O00217 210 aa9.39□□□□□ -0.91
USP1-201ENST00000339950 LINC00477Q96M19 166 aa9.39□□□□□ -0.91
USP1-201ENST00000339950 TSSC4Q9Y5U2 329 aaPredicted RBP9.39□□□□□ -0.91
USP1-201ENST00000339950 NPYP01303 97 aa9.38□□□□□ -0.91
USP1-201ENST00000339950 Q6ZQT7 251 aa9.38□□□□□ -0.91
USP1-201ENST00000339950 MBD6Q96DN6 1003 aa9.38□□□□□ -0.91
USP1-201ENST00000339950 ZNF479Q96JC4 524 aa9.38□□□□□ -0.91
USP1-201ENST00000339950 DKK2Q9UBU2 259 aa9.38□□□□□ -0.91
USP1-201ENST00000339950 EGR2P11161 476 aaPredicted RBP9.38□□□□□ -0.91
USP1-201ENST00000339950 RBX1P62877 108 aa9.38□□□□□ -0.91
USP1-201ENST00000339950 TTC9CQ8N5M4 171 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms