RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 TMEM8BA6NDV4 472 aa10.56□□□□□ -0.72
CCDC88C-201ENST00000331194 F8W1H4 67 aa10.56□□□□□ -0.72
CCDC88C-201ENST00000331194 IGKV2D-40P01614 121 aaPredicted RBP10.56□□□□□ -0.72
CCDC88C-201ENST00000331194 NPIPB5A8MRT5 1133 aa10.56□□□□□ -0.72
CCDC88C-201ENST00000331194 CT45A10P0DMU9 189 aa10.56□□□□□ -0.72
CCDC88C-201ENST00000331194 RPL27AP46776 148 aaKnown RBP10.56□□□□□ -0.72
CCDC88C-201ENST00000331194 C12orf74Q32Q52 190 aa10.56□□□□□ -0.72
CCDC88C-201ENST00000331194 VMA21Q3ZAQ7 101 aa10.56□□□□□ -0.72
CCDC88C-201ENST00000331194 LINC00312Q9Y6C7 94 aa10.56□□□□□ -0.72
CCDC88C-201ENST00000331194 PIEZO1Q92508 2521 aa10.56□□□□□ -0.72
CCDC88C-201ENST00000331194 TM4SF5O14894 197 aa10.56□□□□□ -0.72
CCDC88C-201ENST00000331194 IGKV1-17P01599 117 aa10.56□□□□□ -0.72
CCDC88C-201ENST00000331194 EGR2P11161 476 aaPredicted RBP10.56□□□□□ -0.72
CCDC88C-201ENST00000331194 IGFBPL1Q8WX77 278 aa10.56□□□□□ -0.72
CCDC88C-201ENST00000331194 IGKCP01834 107 aa10.55□□□□□ -0.72
CCDC88C-201ENST00000331194 ZNF80P51504 273 aaPredicted RBP10.55□□□□□ -0.72
CCDC88C-201ENST00000331194 GAGE13Q4V321 117 aa10.55□□□□□ -0.72
CCDC88C-201ENST00000331194 LYPD2Q6UXB3 125 aa10.55□□□□□ -0.72
CCDC88C-201ENST00000331194 RASL11BQ9BPW5 248 aa10.55□□□□□ -0.72
CCDC88C-201ENST00000331194 PTPRQQ9UMZ3 2332 aa10.55□□□□□ -0.72
CCDC88C-201ENST00000331194 TRBV7-9A0A0J9YWB2 115 aa10.55□□□□□ -0.72
CCDC88C-201ENST00000331194 A0A1B0GWB2 263 aa10.55□□□□□ -0.72
CCDC88C-201ENST00000331194 SMIM20Q8N5G0 67 aa10.55□□□□□ -0.72
CCDC88C-201ENST00000331194 COL27A1Q8IZC6 1860 aaPredicted RBP10.55□□□□□ -0.72
CCDC88C-201ENST00000331194 A0A1B0GW15 77 aa10.54□□□□□ -0.72
CCDC88C-201ENST00000331194 MT-ATP8P03928 68 aa10.54□□□□□ -0.72
CCDC88C-201ENST00000331194 C1orf162Q8NEQ5 155 aaPredicted RBP10.54□□□□□ -0.72
CCDC88C-201ENST00000331194 ZNF418Q8TF45 676 aaPredicted RBP10.54□□□□□ -0.72
CCDC88C-201ENST00000331194 TM2D2Q9BX73 214 aa10.54□□□□□ -0.72
CCDC88C-201ENST00000331194 DCHS2Q6V1P9 2916 aa10.54□□□□□ -0.72
CCDC88C-201ENST00000331194 DEFB109BQ30KR1 87 aa10.54□□□□□ -0.72
CCDC88C-201ENST00000331194 FDCSPQ8NFU4 85 aa10.54□□□□□ -0.72
CCDC88C-201ENST00000331194 TMEM158Q8WZ71 300 aa10.54□□□□□ -0.72
CCDC88C-201ENST00000331194 HIGD1BQ9P298 99 aa10.54□□□□□ -0.72
CCDC88C-201ENST00000331194 LINC01548A6NM66 108 aa10.53□□□□□ -0.72
CCDC88C-201ENST00000331194 GLRXP35754 106 aa10.53□□□□□ -0.72
CCDC88C-201ENST00000331194 KLF17Q5JT82 389 aaPredicted RBP10.53□□□□□ -0.72
CCDC88C-201ENST00000331194 C8orf86Q6ZUL3 223 aa10.53□□□□□ -0.72
CCDC88C-201ENST00000331194 TMEM178AQ8NBL3 297 aa10.53□□□□□ -0.72
CCDC88C-201ENST00000331194 MRPL35Q9NZE8 188 aaKnown RBP10.53□□□□□ -0.72
CCDC88C-201ENST00000331194 PRO0461Q9UI25 63 aa10.53□□□□□ -0.72
CCDC88C-201ENST00000331194 PROCRQ9UNN8 238 aa10.53□□□□□ -0.72
CCDC88C-201ENST00000331194 VSTM5A8MXK1 200 aa10.53□□□□□ -0.72
CCDC88C-201ENST00000331194 ANXA2RQ3ZCQ2 193 aa10.53□□□□□ -0.72
CCDC88C-201ENST00000331194 ZNF575Q86XF7 245 aa10.53□□□□□ -0.72
CCDC88C-201ENST00000331194 GLMPQ8WWB7 406 aa10.53□□□□□ -0.72
CCDC88C-201ENST00000331194 RNF185Q96GF1 192 aa10.53□□□□□ -0.72
CCDC88C-201ENST00000331194 ZMAT4Q9H898 229 aa10.53□□□□□ -0.72
CCDC88C-201ENST00000331194 TMEM14CQ9P0S9 112 aa10.53□□□□□ -0.72
CCDC88C-201ENST00000331194 DKK4Q9UBT3 224 aa10.53□□□□□ -0.72
CCDC88C-201ENST00000331194 OR11H12B2RN74 326 aa10.53□□□□□ -0.72
CCDC88C-201ENST00000331194 CLEC3BP05452 202 aa10.53□□□□□ -0.72
CCDC88C-201ENST00000331194 SYT8Q8NBV8 401 aa10.53□□□□□ -0.72
CCDC88C-201ENST00000331194 OR11H1Q8NG94 326 aa10.53□□□□□ -0.72
CCDC88C-201ENST00000331194 OR11H2Q8NH07 326 aa10.53□□□□□ -0.72
CCDC88C-201ENST00000331194 HIST1H4GQ99525 98 aa10.53□□□□□ -0.72
CCDC88C-201ENST00000331194 ANAPC13Q9BS18 74 aa10.53□□□□□ -0.72
CCDC88C-201ENST00000331194 FBXL15Q9H469 300 aa10.53□□□□□ -0.72
CCDC88C-201ENST00000331194 CTSZQ9UBR2 303 aa10.53□□□□□ -0.72
CCDC88C-201ENST00000331194 NDUFA3O95167 84 aa10.52□□□□□ -0.72
CCDC88C-201ENST00000331194 BRI3O95415 125 aa10.52□□□□□ -0.72
CCDC88C-201ENST00000331194 IL4P05112 153 aa10.52□□□□□ -0.72
CCDC88C-201ENST00000331194 HLA-DMBP28068 263 aa10.52□□□□□ -0.72
CCDC88C-201ENST00000331194 GATA4P43694 442 aa10.52□□□□□ -0.73
CCDC88C-201ENST00000331194 FHL3Q13643 280 aa10.52□□□□□ -0.73
CCDC88C-201ENST00000331194 Q6AWC8 147 aa10.52□□□□□ -0.73
CCDC88C-201ENST00000331194 PTH2Q96A98 100 aa10.52□□□□□ -0.73
CCDC88C-201ENST00000331194 SCNM1Q9BWG6 230 aa10.52□□□□□ -0.73
CCDC88C-201ENST00000331194 RALYQ9UKM9 306 aaKnown RBP10.52□□□□□ -0.73
CCDC88C-201ENST00000331194 IGHV3OR16-8A0A075B7F1 116 aa10.51□□□□□ -0.73
CCDC88C-201ENST00000331194 ZNF474Q6S9Z5 364 aaPredicted RBP10.51□□□□□ -0.73
CCDC88C-201ENST00000331194 SEM1Q6ZVN7 128 aa10.51□□□□□ -0.73
CCDC88C-201ENST00000331194 SHANK2-AS3Q9BTD1 123 aa10.51□□□□□ -0.73
CCDC88C-201ENST00000331194 MAP1LC3AQ9H492 121 aa10.51□□□□□ -0.73
CCDC88C-201ENST00000331194 UFC1Q9Y3C8 167 aa10.51□□□□□ -0.73
CCDC88C-201ENST00000331194 IGLV3-9A0A075B6K5 115 aa10.51□□□□□ -0.73
CCDC88C-201ENST00000331194 TEX22C9J3V5 150 aa10.51□□□□□ -0.73
CCDC88C-201ENST00000331194 TNFRSF6BO95407 300 aa10.51□□□□□ -0.73
CCDC88C-201ENST00000331194 HIF1ANQ9NWT6 349 aa10.51□□□□□ -0.73
CCDC88C-201ENST00000331194 I3L2K1 104 aa10.51□□□□□ -0.73
CCDC88C-201ENST00000331194 DPM2O94777 84 aa10.51□□□□□ -0.73
CCDC88C-201ENST00000331194 APOMO95445 188 aa10.51□□□□□ -0.73
CCDC88C-201ENST00000331194 NFE4Q86UQ8 179 aa10.51□□□□□ -0.73
CCDC88C-201ENST00000331194 CCL17Q92583 94 aa10.51□□□□□ -0.73
CCDC88C-201ENST00000331194 ERG28Q9UKR5 140 aa10.51□□□□□ -0.73
CCDC88C-201ENST00000331194 SIGLEC9Q9Y336 463 aa10.51□□□□□ -0.73
CCDC88C-201ENST00000331194 ORM1P02763 201 aa10.5□□□□□ -0.73
CCDC88C-201ENST00000331194 ASCL5Q7RTU5 278 aa10.5□□□□□ -0.73
CCDC88C-201ENST00000331194 PIP4P1Q86T03 277 aa10.5□□□□□ -0.73
CCDC88C-201ENST00000331194 SPTBN1Q01082 2364 aaKnown RBP10.5□□□□□ -0.73
CCDC88C-201ENST00000331194 TRAV26-2A0A0B4J265 109 aa10.5□□□□□ -0.73
CCDC88C-201ENST00000331194 TRBV6-1A0A0K0K1D8 114 aa10.5□□□□□ -0.73
CCDC88C-201ENST00000331194 ZNF491Q8N8L2 437 aa10.5□□□□□ -0.73
CCDC88C-201ENST00000331194 CDIP1Q9H305 208 aa10.5□□□□□ -0.73
CCDC88C-201ENST00000331194 AKAP6Q13023 2319 aa10.5□□□□□ -0.73
CCDC88C-201ENST00000331194 ARHGAP32A7KAX9 2087 aa10.49□□□□□ -0.73
CCDC88C-201ENST00000331194 SMCPP49901 116 aaPredicted RBP10.49□□□□□ -0.73
CCDC88C-201ENST00000331194 EFNA4P52798 201 aa10.49□□□□□ -0.73
CCDC88C-201ENST00000331194 RRN3P1Q2M238 152 aa10.49□□□□□ -0.73
CCDC88C-201ENST00000331194 H3BRN7 92 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms