RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 PPBPP02775 128 aa8.15□□□□□ -1.1
CHD3-201ENST00000330494 TMEM213A2RRL7 107 aa8.15□□□□□ -1.1
CHD3-201ENST00000330494 Q6ZS49 121 aa8.15□□□□□ -1.1
CHD3-201ENST00000330494 NDUFA4L2Q9NRX3 87 aa8.15□□□□□ -1.1
CHD3-201ENST00000330494 KLF12Q9Y4X4 402 aa8.15□□□□□ -1.1
CHD3-201ENST00000330494 A0A1B0GUS0 222 aa8.15□□□□□ -1.1
CHD3-201ENST00000330494 INSP01308 110 aa8.15□□□□□ -1.1
CHD3-201ENST00000330494 ADCYAP1P18509 176 aa8.15□□□□□ -1.1
CHD3-201ENST00000330494 TMEM158Q8WZ71 300 aa8.15□□□□□ -1.1
CHD3-201ENST00000330494 SRSF8Q9BRL6 282 aaKnown RBP8.15□□□□□ -1.1
CHD3-201ENST00000330494 CD5LO43866 347 aa8.15□□□□□ -1.11
CHD3-201ENST00000330494 IGKV1-39P01597 117 aa8.15□□□□□ -1.11
CHD3-201ENST00000330494 IGKV1D-39P04432 117 aa8.15□□□□□ -1.11
CHD3-201ENST00000330494 TMEM131Q92545 1883 aa8.15□□□□□ -1.11
CHD3-201ENST00000330494 LMO1P25800 156 aa8.15□□□□□ -1.11
CHD3-201ENST00000330494 C1orf147Q96MC9 270 aaPredicted RBP8.15□□□□□ -1.11
CHD3-201ENST00000330494 SHANK2-AS3Q9BTD1 123 aa8.15□□□□□ -1.11
CHD3-201ENST00000330494 PSCAO43653 123 aa8.14□□□□□ -1.11
CHD3-201ENST00000330494 TEX36Q5VZQ5 186 aa8.14□□□□□ -1.11
CHD3-201ENST00000330494 C9JQL5 133 aa8.14□□□□□ -1.11
CHD3-201ENST00000330494 IGLV1-44P01699 117 aa8.14□□□□□ -1.11
CHD3-201ENST00000330494 ARMS2P0C7Q2 107 aa8.14□□□□□ -1.11
CHD3-201ENST00000330494 RPL36AP83881 106 aaKnown RBP8.14□□□□□ -1.11
CHD3-201ENST00000330494 RPL36ALQ969Q0 106 aaKnown RBP8.14□□□□□ -1.11
CHD3-201ENST00000330494 PLNP26678 52 aa8.14□□□□□ -1.11
CHD3-201ENST00000330494 PAX9P55771 341 aa8.14□□□□□ -1.11
CHD3-201ENST00000330494 ZFHX2Q9C0A1 2572 aaPredicted RBP8.14□□□□□ -1.11
CHD3-201ENST00000330494 TRAV1-1A0A0B4J248 108 aa8.14□□□□□ -1.11
CHD3-201ENST00000330494 LINC01619G3V211 115 aa8.14□□□□□ -1.11
CHD3-201ENST00000330494 DTX2Q86UW9 622 aa8.14□□□□□ -1.11
CHD3-201ENST00000330494 Q86TA4 180 aa8.14□□□□□ -1.11
CHD3-201ENST00000330494 Q8TCH9 128 aa8.14□□□□□ -1.11
CHD3-201ENST00000330494 C15orf65H3BRN8 121 aa8.14□□□□□ -1.11
CHD3-201ENST00000330494 MALRD1Q5VYJ5 2156 aa8.14□□□□□ -1.11
CHD3-201ENST00000330494 HAPLN4Q86UW8 402 aa8.13□□□□□ -1.11
CHD3-201ENST00000330494 TRAV26-2A0A0B4J265 109 aa8.13□□□□□ -1.11
CHD3-201ENST00000330494 SHISA9B4DS77 424 aa8.13□□□□□ -1.11
CHD3-201ENST00000330494 ETV2O00321 342 aaPredicted RBP8.13□□□□□ -1.11
CHD3-201ENST00000330494 LGALS1P09382 135 aaKnown RBP8.13□□□□□ -1.11
CHD3-201ENST00000330494 TRAV8-3A0A0A6YYJ7 113 aa8.13□□□□□ -1.11
CHD3-201ENST00000330494 TCTEX1D4Q5JR98 221 aa8.13□□□□□ -1.11
CHD3-201ENST00000330494 A0A096LPF7 62 aa8.13□□□□□ -1.11
CHD3-201ENST00000330494 C9JAW5 83 aa8.13□□□□□ -1.11
CHD3-201ENST00000330494 S100A7L2Q5SY68 101 aa8.13□□□□□ -1.11
CHD3-201ENST00000330494 GAGE2AQ6NT46 116 aa8.13□□□□□ -1.11
CHD3-201ENST00000330494 GATD1Q8NB37 220 aa8.13□□□□□ -1.11
CHD3-201ENST00000330494 SLC25A20O43772 301 aa8.13□□□□□ -1.11
CHD3-201ENST00000330494 AZU1P20160 251 aa8.13□□□□□ -1.11
CHD3-201ENST00000330494 RNF114Q9Y508 228 aa8.13□□□□□ -1.11
CHD3-201ENST00000330494 IGHV3-38A0A0C4DH36 116 aa8.13□□□□□ -1.11
CHD3-201ENST00000330494 LYL1P12980 280 aa8.13□□□□□ -1.11
CHD3-201ENST00000330494 BOD1L2Q8IYS8 172 aa8.13□□□□□ -1.11
CHD3-201ENST00000330494 DEFB136Q30KP8 78 aa8.12□□□□□ -1.11
CHD3-201ENST00000330494 RNF166Q96A37 237 aaPredicted RBP8.12□□□□□ -1.11
CHD3-201ENST00000330494 ZNF625Q96I27 306 aaPredicted RBP8.12□□□□□ -1.11
CHD3-201ENST00000330494 SPXQ9BT56 116 aa8.12□□□□□ -1.11
CHD3-201ENST00000330494 SYS1-DBNDD2H3BUS1 97 aa8.12□□□□□ -1.11
CHD3-201ENST00000330494 CDK2AP2O75956 126 aa8.12□□□□□ -1.11
CHD3-201ENST00000330494 WT1-ASQ06250 92 aa8.12□□□□□ -1.11
CHD3-201ENST00000330494 TEX43Q6ZNM6 134 aa8.12□□□□□ -1.11
CHD3-201ENST00000330494 FAM90A2PQ658T7 463 aa8.12□□□□□ -1.11
CHD3-201ENST00000330494 ITGB1BP1O14713 200 aa8.12□□□□□ -1.11
CHD3-201ENST00000330494 HOXB4P17483 251 aaPredicted RBP8.12□□□□□ -1.11
CHD3-201ENST00000330494 C8orf86Q6ZUL3 223 aa8.12□□□□□ -1.11
CHD3-201ENST00000330494 GAGE12JA6NER3 117 aa8.11□□□□□ -1.11
CHD3-201ENST00000330494 C22orf46C9J442 243 aa8.11□□□□□ -1.11
CHD3-201ENST00000330494 PAX4O43316 350 aa8.11□□□□□ -1.11
CHD3-201ENST00000330494 GAGE1Q13065 139 aa8.11□□□□□ -1.11
CHD3-201ENST00000330494 GAGE4Q13068 117 aa8.11□□□□□ -1.11
CHD3-201ENST00000330494 GAGE5Q13069 117 aa8.11□□□□□ -1.11
CHD3-201ENST00000330494 F5H768 121 aa8.11□□□□□ -1.11
CHD3-201ENST00000330494 IGHV4-59P01825 116 aa8.11□□□□□ -1.11
CHD3-201ENST00000330494 IFITM1P13164 125 aa8.11□□□□□ -1.11
CHD3-201ENST00000330494 HLA-DMBP28068 263 aa8.11□□□□□ -1.11
CHD3-201ENST00000330494 CTSZQ9UBR2 303 aa8.11□□□□□ -1.11
CHD3-201ENST00000330494 WISP2O76076 250 aa8.11□□□□□ -1.11
CHD3-201ENST00000330494 NEGR1Q7Z3B1 354 aa8.11□□□□□ -1.11
CHD3-201ENST00000330494 VCYO14598 125 aa8.11□□□□□ -1.11
CHD3-201ENST00000330494 GAGE7O76087 117 aa8.11□□□□□ -1.11
CHD3-201ENST00000330494 GAGE12FP0CL80 117 aa8.11□□□□□ -1.11
CHD3-201ENST00000330494 GAGE12GP0CL81 117 aa8.11□□□□□ -1.11
CHD3-201ENST00000330494 GAGE12IP0CL82 117 aa8.11□□□□□ -1.11
CHD3-201ENST00000330494 CMC4P56277 68 aaPredicted RBP8.11□□□□□ -1.11
CHD3-201ENST00000330494 C17orf77Q96MU5 243 aa8.11□□□□□ -1.11
CHD3-201ENST00000330494 CHAC1Q9BUX1 264 aa8.11□□□□□ -1.11
CHD3-201ENST00000330494 ZNF726P1Q15940 193 aa8.1□□□□□ -1.11
CHD3-201ENST00000330494 A0A1B0GW64 132 aa8.1□□□□□ -1.11
CHD3-201ENST00000330494 A0A1W2PNU3 283 aaPredicted RBP8.1□□□□□ -1.11
CHD3-201ENST00000330494 MST1LQ2TV78 715 aa8.1□□□□□ -1.11
CHD3-201ENST00000330494 TECTAO75443 2155 aa8.1□□□□□ -1.11
CHD3-201ENST00000330494 K7EP13 123 aa8.1□□□□□ -1.11
CHD3-201ENST00000330494 DEFB112Q30KQ8 113 aa8.1□□□□□ -1.11
CHD3-201ENST00000330494 LTBP2Q14767 1821 aa8.1□□□□□ -1.11
CHD3-201ENST00000330494 SPRY2O43597 315 aa8.1□□□□□ -1.11
CHD3-201ENST00000330494 GATA3P23771 443 aa8.1□□□□□ -1.11
CHD3-201ENST00000330494 RITA1Q96K30 269 aa8.1□□□□□ -1.11
CHD3-201ENST00000330494 TNRC6AQ8NDV7 1962 aaKnown RBP8.1□□□□□ -1.11
CHD3-201ENST00000330494 LYPD1Q8N2G4 141 aa8.1□□□□□ -1.11
CHD3-201ENST00000330494 FGF23Q9GZV9 251 aaPredicted RBP8.1□□□□□ -1.11
CHD3-201ENST00000330494 WIPF3A6NGB9 483 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 139.6 ms