RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 KLRD1Q13241 179 aa11.64□□□□□ -0.55
COL7A1-201ENST00000328333 RNASE6Q93091 150 aaKnown RBP11.64□□□□□ -0.55
COL7A1-201ENST00000328333 C2orf66Q6UXQ4 117 aa11.64□□□□□ -0.55
COL7A1-201ENST00000328333 Q6ZWC4 215 aa11.64□□□□□ -0.55
COL7A1-201ENST00000328333 IGLV3-19P01714 112 aa11.64□□□□□ -0.55
COL7A1-201ENST00000328333 TRBV25-1A0A075B6N4 114 aa11.64□□□□□ -0.55
COL7A1-201ENST00000328333 IGHV1-8P0DP01 117 aa11.64□□□□□ -0.55
COL7A1-201ENST00000328333 SYNJ2BPP57105 145 aa11.64□□□□□ -0.55
COL7A1-201ENST00000328333 ZNF114Q8NC26 417 aa11.64□□□□□ -0.55
COL7A1-201ENST00000328333 FUSP35637 526 aaKnown RBP eCLIP11.63□□□□□ -0.55
COL7A1-201ENST00000328333 KNCNA6PVL3 124 aa11.63□□□□□ -0.55
COL7A1-201ENST00000328333 NPYP01303 97 aa11.63□□□□□ -0.55
COL7A1-201ENST00000328333 F6UB75 175 aa11.63□□□□□ -0.55
COL7A1-201ENST00000328333 SIGLEC8Q9NYZ4 499 aa11.63□□□□□ -0.55
COL7A1-201ENST00000328333 RHOHQ15669 191 aa11.63□□□□□ -0.55
COL7A1-201ENST00000328333 TEN1Q86WV5 123 aa11.63□□□□□ -0.55
COL7A1-201ENST00000328333 ATP6V0E2Q8NHE4 81 aa11.63□□□□□ -0.55
COL7A1-201ENST00000328333 C15orf62A8K5M9 175 aa11.63□□□□□ -0.55
COL7A1-201ENST00000328333 LYZL4Q96KX0 146 aa11.63□□□□□ -0.55
COL7A1-201ENST00000328333 CELA3BP08861 270 aa11.62□□□□□ -0.55
COL7A1-201ENST00000328333 ZNF474Q6S9Z5 364 aaPredicted RBP11.62□□□□□ -0.55
COL7A1-201ENST00000328333 NTN3O00634 580 aaPredicted RBP11.62□□□□□ -0.55
COL7A1-201ENST00000328333 GAS1P54826 345 aa11.62□□□□□ -0.55
COL7A1-201ENST00000328333 QRFPP83859 136 aa11.62□□□□□ -0.55
COL7A1-201ENST00000328333 ORMDL1Q9P0S3 153 aa11.62□□□□□ -0.55
COL7A1-201ENST00000328333 H3BMG7 143 aa11.62□□□□□ -0.55
COL7A1-201ENST00000328333 RFPL3SP0C7P2 107 aa11.62□□□□□ -0.55
COL7A1-201ENST00000328333 IGKV1D-43A0A0B4J1Z2 117 aa11.62□□□□□ -0.55
COL7A1-201ENST00000328333 IGHV3OR16-8A0A075B7F1 116 aa11.62□□□□□ -0.55
COL7A1-201ENST00000328333 TIAF1O95411 115 aa11.62□□□□□ -0.55
COL7A1-201ENST00000328333 IGHV1-3A0A0C4DH29 117 aa11.61□□□□□ -0.55
COL7A1-201ENST00000328333 ZNF561-AS1K7EIQ3 104 aa11.61□□□□□ -0.55
COL7A1-201ENST00000328333 MST1P26927 711 aa11.61□□□□□ -0.55
COL7A1-201ENST00000328333 hADV29S1A0JD25 119 aa11.61□□□□□ -0.55
COL7A1-201ENST00000328333 IGHV3-11P01762 117 aa11.61□□□□□ -0.55
COL7A1-201ENST00000328333 PPIFP30405 207 aaKnown RBP11.61□□□□□ -0.55
COL7A1-201ENST00000328333 HAMPP81172 84 aa11.61□□□□□ -0.55
COL7A1-201ENST00000328333 NDUFA12Q9UI09 145 aa11.61□□□□□ -0.55
COL7A1-201ENST00000328333 CEACAM8P31997 349 aaPredicted RBP11.61□□□□□ -0.55
COL7A1-201ENST00000328333 ZNF493Q6ZR52 646 aa11.61□□□□□ -0.55
COL7A1-201ENST00000328333 ZNF625Q96I27 306 aaPredicted RBP11.61□□□□□ -0.55
COL7A1-201ENST00000328333 MP68P56378 58 aa11.6□□□□□ -0.55
COL7A1-201ENST00000328333 VMO1Q7Z5L0 202 aa11.6□□□□□ -0.55
COL7A1-201ENST00000328333 IGHG2P01859 326 aa11.6□□□□□ -0.55
COL7A1-201ENST00000328333 HTN3P15516 51 aa11.6□□□□□ -0.55
COL7A1-201ENST00000328333 TMEM243Q9BU79 118 aa11.6□□□□□ -0.55
COL7A1-201ENST00000328333 TRAV13-1A0A0B4J241 112 aa11.6□□□□□ -0.55
COL7A1-201ENST00000328333 J3QQQ9 107 aa11.6□□□□□ -0.55
COL7A1-201ENST00000328333 C15orf53Q8NAA6 179 aa11.6□□□□□ -0.55
COL7A1-201ENST00000328333 HS3ST6Q96QI5 342 aa11.6□□□□□ -0.55
COL7A1-201ENST00000328333 IGKV1D-8A0A087WSZ0 117 aa11.6□□□□□ -0.55
COL7A1-201ENST00000328333 THBDP07204 575 aa11.6□□□□□ -0.55
COL7A1-201ENST00000328333 KLF5Q13887 457 aaPredicted RBP11.6□□□□□ -0.55
COL7A1-201ENST00000328333 CCL3L1P16619 93 aa11.6□□□□□ -0.55
COL7A1-201ENST00000328333 SIGLEC9Q9Y336 463 aa11.6□□□□□ -0.55
COL7A1-201ENST00000328333 SMIM2Q9BVW6 85 aa11.59□□□□□ -0.55
COL7A1-201ENST00000328333 ARMS2P0C7Q2 107 aa11.59□□□□□ -0.55
COL7A1-201ENST00000328333 DEFB125Q8N687 156 aa11.59□□□□□ -0.55
COL7A1-201ENST00000328333 FOXF2Q12947 444 aa11.59□□□□□ -0.55
COL7A1-201ENST00000328333 C20orf204Q6ZNR8 217 aa11.59□□□□□ -0.55
COL7A1-201ENST00000328333 RMI2Q96E14 147 aa11.59□□□□□ -0.55
COL7A1-201ENST00000328333 NTF4P34130 210 aa11.59□□□□□ -0.55
COL7A1-201ENST00000328333 IL15RAQ13261 267 aa11.59□□□□□ -0.55
COL7A1-201ENST00000328333 MORN5Q5VZ52 161 aa11.59□□□□□ -0.55
COL7A1-201ENST00000328333 V9GYV3 84 aa11.59□□□□□ -0.55
COL7A1-201ENST00000328333 THAP8Q8NA92 274 aa11.59□□□□□ -0.55
COL7A1-201ENST00000328333 SPANXB1Q9NS25 103 aaPredicted RBP11.58□□□□□ -0.55
COL7A1-201ENST00000328333 B5MCH6 92 aa11.58□□□□□ -0.56
COL7A1-201ENST00000328333 SPAARA0A1B0GVQ0 90 aa11.58□□□□□ -0.56
COL7A1-201ENST00000328333 PSCAO43653 123 aa11.58□□□□□ -0.56
COL7A1-201ENST00000328333 HERV-K104P63124 156 aa11.58□□□□□ -0.56
COL7A1-201ENST00000328333 COA6Q5JTJ3 125 aaKnown RBP11.58□□□□□ -0.56
COL7A1-201ENST00000328333 BMPERQ8N8U9 685 aa11.58□□□□□ -0.56
COL7A1-201ENST00000328333 CFHR2P36980 270 aa11.58□□□□□ -0.56
COL7A1-201ENST00000328333 BUB1B-PAK6H3BSN5 160 aa11.58□□□□□ -0.56
COL7A1-201ENST00000328333 H0YGX0 51 aa11.57□□□□□ -0.56
COL7A1-201ENST00000328333 IGLL1P15814 213 aa11.57□□□□□ -0.56
COL7A1-201ENST00000328333 C11orf52Q96A22 123 aa11.57□□□□□ -0.56
COL7A1-201ENST00000328333 PDE6GP18545 87 aa11.57□□□□□ -0.56
COL7A1-201ENST00000328333 NBL1P41271 181 aa11.57□□□□□ -0.56
COL7A1-201ENST00000328333 CRYBA4P53673 196 aa11.57□□□□□ -0.56
COL7A1-201ENST00000328333 Q8TAT8 98 aa11.57□□□□□ -0.56
COL7A1-201ENST00000328333 SDHAF1A6NFY7 115 aa11.57□□□□□ -0.56
COL7A1-201ENST00000328333 FDCSPQ8NFU4 85 aa11.57□□□□□ -0.56
COL7A1-201ENST00000328333 RNF152Q8N8N0 203 aa11.57□□□□□ -0.56
COL7A1-201ENST00000328333 RNF166Q96A37 237 aaPredicted RBP11.57□□□□□ -0.56
COL7A1-201ENST00000328333 UBE2DNLQ8IWF7 75 aa11.57□□□□□ -0.56
COL7A1-201ENST00000328333 FOXI2Q6ZQN5 318 aa11.56□□□□□ -0.56
COL7A1-201ENST00000328333 RNASE2P10153 161 aaKnown RBP11.56□□□□□ -0.56
COL7A1-201ENST00000328333 CFHR4Q92496 578 aa11.56□□□□□ -0.56
COL7A1-201ENST00000328333 IGKV1-27A0A075B6S5 117 aa11.56□□□□□ -0.56
COL7A1-201ENST00000328333 LYPD3O95274 346 aa11.56□□□□□ -0.56
COL7A1-201ENST00000328333 GATA3P23771 443 aa11.56□□□□□ -0.56
COL7A1-201ENST00000328333 MRPL51Q4U2R6 128 aaKnown RBP11.55□□□□□ -0.56
COL7A1-201ENST00000328333 CFHR1Q03591 330 aa11.55□□□□□ -0.56
COL7A1-201ENST00000328333 PTPRSQ13332 1948 aa11.55□□□□□ -0.56
COL7A1-201ENST00000328333 F8P00451 2351 aa11.55□□□□□ -0.56
COL7A1-201ENST00000328333 RBAKDNA6NC62 111 aa11.55□□□□□ -0.56
COL7A1-201ENST00000328333 LENEPQ9Y5L5 61 aa11.55□□□□□ -0.56
COL7A1-201ENST00000328333 TMEM200BQ69YZ2 307 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms