RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 TMEM78Q5T7P6 136 aa11.41□□□□□ -0.58
HDDC2-201ENST00000318787 LINC00528Q8N1L1 170 aa11.41□□□□□ -0.58
HDDC2-201ENST00000318787 HSD17B11Q8NBQ5 300 aa11.41□□□□□ -0.58
HDDC2-201ENST00000318787 TMEM263Q8WUH6 116 aaKnown RBP11.41□□□□□ -0.58
HDDC2-201ENST00000318787 C20orf144Q9BQM9 153 aa11.41□□□□□ -0.58
HDDC2-201ENST00000318787 RPH3ALQ9UNE2 315 aa11.41□□□□□ -0.58
HDDC2-201ENST00000318787 TIMM8BQ9Y5J9 83 aaPredicted RBP11.41□□□□□ -0.58
HDDC2-201ENST00000318787 PLAC8L1A1L4L8 177 aa11.4□□□□□ -0.59
HDDC2-201ENST00000318787 F5H768 121 aa11.4□□□□□ -0.59
HDDC2-201ENST00000318787 HMGB3O15347 200 aaKnown RBP11.4□□□□□ -0.59
HDDC2-201ENST00000318787 RNASE4P34096 147 aaKnown RBP11.4□□□□□ -0.59
HDDC2-201ENST00000318787 CSN1S1P47710 185 aa11.4□□□□□ -0.59
HDDC2-201ENST00000318787 RAB2AP61019 212 aa11.4□□□□□ -0.59
HDDC2-201ENST00000318787 BTN1A1Q13410 526 aa11.4□□□□□ -0.59
HDDC2-201ENST00000318787 OXA1LQ15070 435 aa11.4□□□□□ -0.59
HDDC2-201ENST00000318787 TMEM88Q6PEY1 159 aa11.4□□□□□ -0.59
HDDC2-201ENST00000318787 HYLS1Q96M11 299 aa11.4□□□□□ -0.59
HDDC2-201ENST00000318787 ODF3Q96PU9 254 aa11.4□□□□□ -0.59
HDDC2-201ENST00000318787 AGPAT4-IT1Q9H0P7 198 aa11.4□□□□□ -0.59
HDDC2-201ENST00000318787 FXYD6-FXYD2A0A087WZ82 144 aa11.39□□□□□ -0.59
HDDC2-201ENST00000318787 C7orf71A4D174 169 aa11.39□□□□□ -0.59
HDDC2-201ENST00000318787 SNURFLB1AK76 121 aa11.39□□□□□ -0.59
HDDC2-201ENST00000318787 GPX1P07203 203 aa11.39□□□□□ -0.59
HDDC2-201ENST00000318787 P0DMU3 169 aa11.39□□□□□ -0.59
HDDC2-201ENST00000318787 FAM231AP0DMU4 169 aa11.39□□□□□ -0.59
HDDC2-201ENST00000318787 FAM231CP0DMU5 169 aa11.39□□□□□ -0.59
HDDC2-201ENST00000318787 ZNF266Q14584 549 aa11.39□□□□□ -0.59
HDDC2-201ENST00000318787 Q5BKY6 102 aa11.39□□□□□ -0.59
HDDC2-201ENST00000318787 RNASE8Q8TDE3 154 aaKnown RBP11.39□□□□□ -0.59
HDDC2-201ENST00000318787 ZNF503Q96F45 646 aa11.39□□□□□ -0.59
HDDC2-201ENST00000318787 LINC00477Q96M19 166 aa11.39□□□□□ -0.59
HDDC2-201ENST00000318787 VGLL1Q99990 258 aa11.39□□□□□ -0.59
HDDC2-201ENST00000318787 Q9H3A6 140 aa11.39□□□□□ -0.59
HDDC2-201ENST00000318787 SLC25A5P05141 298 aaKnown RBP11.38□□□□□ -0.59
HDDC2-201ENST00000318787 GIPP09681 153 aaPredicted RBP11.38□□□□□ -0.59
HDDC2-201ENST00000318787 M6PRP20645 277 aa11.38□□□□□ -0.59
HDDC2-201ENST00000318787 CD300CQ08708 224 aa11.38□□□□□ -0.59
HDDC2-201ENST00000318787 ZNF493Q6ZR52 646 aa11.38□□□□□ -0.59
HDDC2-201ENST00000318787 INO80EQ8NBZ0 244 aaPredicted RBP11.38□□□□□ -0.59
HDDC2-201ENST00000318787 OR10G4Q8NGN3 311 aa11.38□□□□□ -0.59
HDDC2-201ENST00000318787 OR10G9Q8NGN4 311 aa11.38□□□□□ -0.59
HDDC2-201ENST00000318787 OR10G7Q8NGN6 311 aa11.38□□□□□ -0.59
HDDC2-201ENST00000318787 Q8TAT8 98 aa11.38□□□□□ -0.59
HDDC2-201ENST00000318787 VPS13DQ5THJ4 4388 aa11.37□□□□□ -0.59
HDDC2-201ENST00000318787 ATP5G1P05496 136 aa11.37□□□□□ -0.59
HDDC2-201ENST00000318787 ATP5G3P48201 142 aa11.37□□□□□ -0.59
HDDC2-201ENST00000318787 FRAS1Q86XX4 4008 aa11.36□□□□□ -0.59
HDDC2-201ENST00000318787 GAGE12BA1L429 117 aa11.36□□□□□ -0.59
HDDC2-201ENST00000318787 CBY3A6NI87 242 aa11.36□□□□□ -0.59
HDDC2-201ENST00000318787 GAGE7O76087 117 aa11.36□□□□□ -0.59
HDDC2-201ENST00000318787 GAGE12FP0CL80 117 aa11.36□□□□□ -0.59
HDDC2-201ENST00000318787 GAGE12GP0CL81 117 aa11.36□□□□□ -0.59
HDDC2-201ENST00000318787 GAGE12IP0CL82 117 aa11.36□□□□□ -0.59
HDDC2-201ENST00000318787 C9orf47Q6ZRZ4 202 aa11.36□□□□□ -0.59
HDDC2-201ENST00000318787 FAM210BQ96KR6 192 aa11.36□□□□□ -0.59
HDDC2-201ENST00000318787 AQP10Q96PS8 301 aa11.36□□□□□ -0.59
HDDC2-201ENST00000318787 PYGO2Q9BRQ0 406 aa11.36□□□□□ -0.59
HDDC2-201ENST00000318787 M0R2N4 97 aa11.35□□□□□ -0.59
HDDC2-201ENST00000318787 RGS13O14921 159 aa11.35□□□□□ -0.59
HDDC2-201ENST00000318787 NUDT3O95989 172 aa11.35□□□□□ -0.59
HDDC2-201ENST00000318787 CDC34P49427 236 aaPredicted RBP11.35□□□□□ -0.59
HDDC2-201ENST00000318787 POM121L12Q8N7R1 296 aa11.35□□□□□ -0.59
HDDC2-201ENST00000318787 OR2T35Q8NGX2 323 aa11.35□□□□□ -0.59
HDDC2-201ENST00000318787 CMTM2Q8TAZ6 248 aa11.35□□□□□ -0.59
HDDC2-201ENST00000318787 ZNF492Q9P255 531 aa11.35□□□□□ -0.59
HDDC2-201ENST00000318787 PGPA6NDG6 321 aa11.34□□□□□ -0.59
HDDC2-201ENST00000318787 KLLNB2CW77 178 aa11.34□□□□□ -0.59
HDDC2-201ENST00000318787 ATP6V0CP27449 155 aa11.34□□□□□ -0.59
HDDC2-201ENST00000318787 ZNF138P52744 262 aa11.34□□□□□ -0.59
HDDC2-201ENST00000318787 FAM74A1Q5RGS3 127 aa11.34□□□□□ -0.59
HDDC2-201ENST00000318787 PRR9Q5T870 116 aa11.34□□□□□ -0.59
HDDC2-201ENST00000318787 LCE2CQ5TA81 110 aa11.34□□□□□ -0.59
HDDC2-201ENST00000318787 SH3BGRL3Q9H299 93 aa11.34□□□□□ -0.59
HDDC2-201ENST00000318787 DNAH10Q8IVF4 4471 aa11.33□□□□□ -0.6
HDDC2-201ENST00000318787 IGLV2-18A0A075B6J9 118 aa11.33□□□□□ -0.6
HDDC2-201ENST00000318787 ARL14EPLP0DKL9 152 aa11.33□□□□□ -0.6
HDDC2-201ENST00000318787 OR5I1Q13606 314 aa11.33□□□□□ -0.6
HDDC2-201ENST00000318787 PQLC2Q6ZP29 291 aa11.33□□□□□ -0.6
HDDC2-201ENST00000318787 IQCF2Q8IXL9 164 aa11.33□□□□□ -0.6
HDDC2-201ENST00000318787 LYPD1Q8N2G4 141 aa11.33□□□□□ -0.6
HDDC2-201ENST00000318787 ASB13Q8WXK3 278 aa11.33□□□□□ -0.6
HDDC2-201ENST00000318787 FAM19A4Q96LR4 140 aa11.33□□□□□ -0.6
HDDC2-201ENST00000318787 ATG101Q9BSB4 218 aa11.33□□□□□ -0.6
HDDC2-201ENST00000318787 GSN-AS1Q9NRJ2 163 aa11.33□□□□□ -0.6
HDDC2-201ENST00000318787 DIRC3C9JPN6 131 aa11.32□□□□□ -0.6
HDDC2-201ENST00000318787 CRISP2P16562 243 aa11.32□□□□□ -0.6
HDDC2-201ENST00000318787 Q6ZQT7 251 aa11.32□□□□□ -0.6
HDDC2-201ENST00000318787 EIF4E3Q8N5X7 224 aaKnown RBP11.32□□□□□ -0.6
HDDC2-201ENST00000318787 ZFAND2AQ8N6M9 145 aa11.32□□□□□ -0.6
HDDC2-201ENST00000318787 C15orf53Q8NAA6 179 aa11.32□□□□□ -0.6
HDDC2-201ENST00000318787 RXFP4Q8TDU9 374 aa11.32□□□□□ -0.6
HDDC2-201ENST00000318787 ARPC5LQ9BPX5 153 aa11.32□□□□□ -0.6
HDDC2-201ENST00000318787 OTORQ9NRC9 128 aa11.32□□□□□ -0.6
HDDC2-201ENST00000318787 NACAE9PAV3 2078 aa11.32□□□□□ -0.6
HDDC2-201ENST00000318787 BORCS7-ASMTA0A0B4J1R7 106 aa11.31□□□□□ -0.6
HDDC2-201ENST00000318787 RNF222A6NCQ9 220 aa11.31□□□□□ -0.6
HDDC2-201ENST00000318787 ZNF324O75467 553 aaPredicted RBP11.31□□□□□ -0.6
HDDC2-201ENST00000318787 MUC21Q5SSG8 566 aa11.31□□□□□ -0.6
HDDC2-201ENST00000318787 RPL7L1Q6DKI1 246 aaKnown RBP11.31□□□□□ -0.6
HDDC2-201ENST00000318787 ZNF680Q8NEM1 530 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms