RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 TMEM14CQ9P0S9 112 aa13.54□□□□□ -0.24
HMGA1-201ENST00000311487 TRBV20OR9-2A0A075B6H5 130 aa13.53□□□□□ -0.24
HMGA1-201ENST00000311487 OR4C46A6NHA9 309 aa13.53□□□□□ -0.24
HMGA1-201ENST00000311487 SOCS3O14543 225 aa13.53□□□□□ -0.24
HMGA1-201ENST00000311487 S100A9P06702 114 aaKnown RBP13.53□□□□□ -0.24
HMGA1-201ENST00000311487 DEFB131AP59861 70 aa13.53□□□□□ -0.24
HMGA1-201ENST00000311487 ODF3L2Q3SX64 289 aa13.53□□□□□ -0.24
HMGA1-201ENST00000311487 DEFB125Q8N687 156 aa13.53□□□□□ -0.24
HMGA1-201ENST00000311487 GSN-AS1Q9NRJ2 163 aa13.53□□□□□ -0.24
HMGA1-201ENST00000311487 PPP1R14DQ9NXH3 145 aa13.53□□□□□ -0.24
HMGA1-201ENST00000311487 DNAH3Q8TD57 4116 aa13.53□□□□□ -0.24
HMGA1-201ENST00000311487 TRBV19A0A075B6N1 114 aa13.52□□□□□ -0.24
HMGA1-201ENST00000311487 ZNF705DP0CH99 300 aaPredicted RBP13.52□□□□□ -0.24
HMGA1-201ENST00000311487 ZNF705BP0CI00 300 aaPredicted RBP13.52□□□□□ -0.24
HMGA1-201ENST00000311487 HIST1H1EP10412 219 aaKnown RBP13.52□□□□□ -0.24
HMGA1-201ENST00000311487 S100PP25815 95 aa13.52□□□□□ -0.24
HMGA1-201ENST00000311487 GTSCR1Q86UQ5 136 aa13.52□□□□□ -0.24
HMGA1-201ENST00000311487 GGTLC3B5MD39 225 aa13.52□□□□□ -0.25
HMGA1-201ENST00000311487 F6UB75 175 aa13.52□□□□□ -0.25
HMGA1-201ENST00000311487 MAP6D1Q9H9H5 199 aa13.52□□□□□ -0.25
HMGA1-201ENST00000311487 AGRNO00468 2067 aa13.52□□□□□ -0.25
HMGA1-201ENST00000311487 A0A1W2PRE2 83 aa13.51□□□□□ -0.25
HMGA1-201ENST00000311487 PGPEP1LA6NFU8 196 aa13.51□□□□□ -0.25
HMGA1-201ENST00000311487 RPS10P46783 165 aaKnown RBP13.51□□□□□ -0.25
HMGA1-201ENST00000311487 KNCNA6PVL3 124 aa13.51□□□□□ -0.25
HMGA1-201ENST00000311487 H7BYZ3 331 aa13.51□□□□□ -0.25
HMGA1-201ENST00000311487 M0R3E3 92 aa13.51□□□□□ -0.25
HMGA1-201ENST00000311487 Q8N1Y9 231 aa13.51□□□□□ -0.25
HMGA1-201ENST00000311487 ANAPC16Q96DE5 110 aa13.51□□□□□ -0.25
HMGA1-201ENST00000311487 ZNF331Q9NQX6 463 aaPredicted RBP13.51□□□□□ -0.25
HMGA1-201ENST00000311487 AURKAIP1Q9NWT8 199 aaPredicted RBP13.51□□□□□ -0.25
HMGA1-201ENST00000311487 RNF24Q9Y225 148 aa13.51□□□□□ -0.25
HMGA1-201ENST00000311487 A0A087X0K7 114 aa13.5□□□□□ -0.25
HMGA1-201ENST00000311487 OR11H12B2RN74 326 aa13.5□□□□□ -0.25
HMGA1-201ENST00000311487 GDF5OSQ5U4N7 250 aa13.5□□□□□ -0.25
HMGA1-201ENST00000311487 TCEAL7Q9BRU2 100 aa13.5□□□□□ -0.25
HMGA1-201ENST00000311487 C19orf73Q9NVV2 129 aa13.5□□□□□ -0.25
HMGA1-201ENST00000311487 PFN1P07737 140 aaKnown RBP13.49□□□□□ -0.25
HMGA1-201ENST00000311487 SNRPD3P62318 126 aaKnown RBP13.49□□□□□ -0.25
HMGA1-201ENST00000311487 ARL6IP6Q8N6S5 226 aa13.49□□□□□ -0.25
HMGA1-201ENST00000311487 MEGF8Q7Z7M0 2845 aa13.49□□□□□ -0.25
HMGA1-201ENST00000311487 TRBV24-1A0A075B6N3 115 aa13.49□□□□□ -0.25
HMGA1-201ENST00000311487 IGKV3-20P01619 116 aa13.49□□□□□ -0.25
HMGA1-201ENST00000311487 SUMO1P63165 101 aaKnown RBP13.49□□□□□ -0.25
HMGA1-201ENST00000311487 FAM210BQ96KR6 192 aa13.49□□□□□ -0.25
HMGA1-201ENST00000311487 RPH3ALQ9UNE2 315 aa13.49□□□□□ -0.25
HMGA1-201ENST00000311487 C9JCJ5 164 aa13.48□□□□□ -0.25
HMGA1-201ENST00000311487 PRAC2D3DTV9 90 aa13.48□□□□□ -0.25
HMGA1-201ENST00000311487 ISLRO14498 428 aa13.48□□□□□ -0.25
HMGA1-201ENST00000311487 ID1P41134 155 aa13.48□□□□□ -0.25
HMGA1-201ENST00000311487 ACTL10Q5JWF8 245 aa13.48□□□□□ -0.25
HMGA1-201ENST00000311487 KPRPQ5T749 579 aaPredicted RBP13.48□□□□□ -0.25
HMGA1-201ENST00000311487 ZNF738Q8NE65 137 aa13.48□□□□□ -0.25
HMGA1-201ENST00000311487 OCC1Q8TAD7 63 aa13.48□□□□□ -0.25
HMGA1-201ENST00000311487 Q9H3A6 140 aa13.48□□□□□ -0.25
HMGA1-201ENST00000311487 DEFB121Q5J5C9 76 aa13.47□□□□□ -0.25
HMGA1-201ENST00000311487 PYGO2Q9BRQ0 406 aa13.47□□□□□ -0.25
HMGA1-201ENST00000311487 LY96Q9Y6Y9 160 aa13.47□□□□□ -0.25
HMGA1-201ENST00000311487 PGPA6NDG6 321 aa13.46□□□□□ -0.25
HMGA1-201ENST00000311487 K7EIL1 84 aa13.46□□□□□ -0.25
HMGA1-201ENST00000311487 GNG5P63218 68 aa13.46□□□□□ -0.25
HMGA1-201ENST00000311487 SFRP2Q96HF1 295 aa13.46□□□□□ -0.25
HMGA1-201ENST00000311487 ASCL2Q99929 193 aa13.46□□□□□ -0.25
HMGA1-201ENST00000311487 K7EN84 100 aa13.45□□□□□ -0.26
HMGA1-201ENST00000311487 RPL35AP18077 110 aaKnown RBP13.45□□□□□ -0.26
HMGA1-201ENST00000311487 DEFA6Q01524 100 aa13.45□□□□□ -0.26
HMGA1-201ENST00000311487 PSG3Q16557 428 aa13.45□□□□□ -0.26
HMGA1-201ENST00000311487 SLC50A1Q9BRV3 221 aa13.45□□□□□ -0.26
HMGA1-201ENST00000311487 SRD5A3Q9H8P0 318 aa13.45□□□□□ -0.26
HMGA1-201ENST00000311487 TRAV2A0A0B4J234 112 aa13.45□□□□□ -0.26
HMGA1-201ENST00000311487 IGHV4-30-4P0DP06 118 aa13.45□□□□□ -0.26
HMGA1-201ENST00000311487 SNRPEP62304 92 aaKnown RBP13.45□□□□□ -0.26
HMGA1-201ENST00000311487 CENPWQ5EE01 88 aa13.45□□□□□ -0.26
HMGA1-201ENST00000311487 AAMDCQ9H7C9 122 aa13.45□□□□□ -0.26
HMGA1-201ENST00000311487 C5orf52A6NGY3 159 aa13.44□□□□□ -0.26
HMGA1-201ENST00000311487 PPP1R2P9O14990 202 aa13.44□□□□□ -0.26
HMGA1-201ENST00000311487 PSG9Q00887 426 aa13.44□□□□□ -0.26
HMGA1-201ENST00000311487 SGK494Q96LW2 274 aa13.44□□□□□ -0.26
HMGA1-201ENST00000311487 PDE6HQ13956 83 aa13.43□□□□□ -0.26
HMGA1-201ENST00000311487 OR4B1Q8NGF8 309 aa13.43□□□□□ -0.26
HMGA1-201ENST00000311487 NBEAL2Q6ZNJ1 2754 aa13.43□□□□□ -0.26
HMGA1-201ENST00000311487 IGKV2-40A0A087WW87 121 aaPredicted RBP13.43□□□□□ -0.26
HMGA1-201ENST00000311487 IGKV2D-40P01614 121 aaPredicted RBP13.43□□□□□ -0.26
HMGA1-201ENST00000311487 TRGC2P03986 189 aa13.43□□□□□ -0.26
HMGA1-201ENST00000311487 GNG4P50150 75 aa13.43□□□□□ -0.26
HMGA1-201ENST00000311487 ERCC8Q13216 396 aa13.43□□□□□ -0.26
HMGA1-201ENST00000311487 IGF2BP2-AS1Q96M15 143 aa13.43□□□□□ -0.26
HMGA1-201ENST00000311487 FXYD7P58549 80 aa13.42□□□□□ -0.26
HMGA1-201ENST00000311487 HIST1H1AQ02539 215 aaPredicted RBP13.42□□□□□ -0.26
HMGA1-201ENST00000311487 MRAPQ8TCY5 172 aa13.42□□□□□ -0.26
HMGA1-201ENST00000311487 A0A1W2PPQ1 181 aa13.41□□□□□ -0.26
HMGA1-201ENST00000311487 SLC25A5P05141 298 aaKnown RBP13.41□□□□□ -0.26
HMGA1-201ENST00000311487 OR10G8Q8NGN5 311 aa13.41□□□□□ -0.26
HMGA1-201ENST00000311487 NIT2Q9NQR4 276 aa13.41□□□□□ -0.26
HMGA1-201ENST00000311487 RBMY1BA6NDE4 496 aaKnown RBP13.41□□□□□ -0.26
HMGA1-201ENST00000311487 RBMY1EA6NEQ0 496 aaKnown RBP13.41□□□□□ -0.26
HMGA1-201ENST00000311487 PEX7O00628 323 aa13.41□□□□□ -0.26
HMGA1-201ENST00000311487 RBMY1DP0C7P1 496 aaKnown RBP13.41□□□□□ -0.26
HMGA1-201ENST00000311487 KCNIP4Q6PIL6 250 aa13.41□□□□□ -0.26
HMGA1-201ENST00000311487 IMMP2LQ96T52 175 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms