RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 C10orf91Q5T1B1 145 aa11.21□□□□□ -0.61
CSPG4-201ENST00000308508 HERVK_113P63121 156 aa11.21□□□□□ -0.61
CSPG4-201ENST00000308508 PNRC2Q9NPJ4 139 aaKnown RBP11.21□□□□□ -0.62
CSPG4-201ENST00000308508 NTN3O00634 580 aaPredicted RBP11.21□□□□□ -0.62
CSPG4-201ENST00000308508 YPEL3P61236 119 aaPredicted RBP11.21□□□□□ -0.62
CSPG4-201ENST00000308508 SDHAF1A6NFY7 115 aa11.21□□□□□ -0.62
CSPG4-201ENST00000308508 TMEM243Q9BU79 118 aa11.21□□□□□ -0.62
CSPG4-201ENST00000308508 TMEM14BQ9NUH8 114 aa11.2□□□□□ -0.62
CSPG4-201ENST00000308508 SIGLEC8Q9NYZ4 499 aa11.2□□□□□ -0.62
CSPG4-201ENST00000308508 KLHL30-AS1Q8NEE0 82 aa11.2□□□□□ -0.62
CSPG4-201ENST00000308508 V9GYV3 84 aa11.2□□□□□ -0.62
CSPG4-201ENST00000308508 TINCRA0A1B0GVN0 87 aa11.2□□□□□ -0.62
CSPG4-201ENST00000308508 KLF5Q13887 457 aaPredicted RBP11.2□□□□□ -0.62
CSPG4-201ENST00000308508 GGNQ86UU5 652 aa11.2□□□□□ -0.62
CSPG4-201ENST00000308508 MRPL35Q9NZE8 188 aaKnown RBP11.2□□□□□ -0.62
CSPG4-201ENST00000308508 DEFB130BP0DP73 79 aa11.2□□□□□ -0.62
CSPG4-201ENST00000308508 DEFB130AP0DP74 79 aa11.2□□□□□ -0.62
CSPG4-201ENST00000308508 IGHG2P01859 326 aa11.2□□□□□ -0.62
CSPG4-201ENST00000308508 C12orf74Q32Q52 190 aa11.2□□□□□ -0.62
CSPG4-201ENST00000308508 COL11A2P13942 1736 aaPredicted RBP11.2□□□□□ -0.62
CSPG4-201ENST00000308508 COL6A6A6NMZ7 2263 aa11.2□□□□□ -0.62
CSPG4-201ENST00000308508 H3BUX3 64 aa11.2□□□□□ -0.62
CSPG4-201ENST00000308508 J3QQQ9 107 aa11.2□□□□□ -0.62
CSPG4-201ENST00000308508 NPYP01303 97 aa11.2□□□□□ -0.62
CSPG4-201ENST00000308508 CSRP2Q16527 193 aa11.19□□□□□ -0.62
CSPG4-201ENST00000308508 LINC01545Q5VT33 79 aa11.19□□□□□ -0.62
CSPG4-201ENST00000308508 CYYR1Q96J86 154 aa11.19□□□□□ -0.62
CSPG4-201ENST00000308508 PKDREJQ9NTG1 2253 aa11.19□□□□□ -0.62
CSPG4-201ENST00000308508 EFNA4P52798 201 aa11.19□□□□□ -0.62
CSPG4-201ENST00000308508 GAFA1Q96PS6 74 aa11.19□□□□□ -0.62
CSPG4-201ENST00000308508 CACNA1EQ15878 2313 aa11.19□□□□□ -0.62
CSPG4-201ENST00000308508 J3KT08 172 aa11.19□□□□□ -0.62
CSPG4-201ENST00000308508 NDUFS5O43920 106 aa11.19□□□□□ -0.62
CSPG4-201ENST00000308508 MESP1Q9BRJ9 268 aa11.19□□□□□ -0.62
CSPG4-201ENST00000308508 ORMDL1Q9P0S3 153 aa11.19□□□□□ -0.62
CSPG4-201ENST00000308508 C9JQL5 133 aa11.19□□□□□ -0.62
CSPG4-201ENST00000308508 GREB1LQ9C091 1923 aaPredicted RBP11.18□□□□□ -0.62
CSPG4-201ENST00000308508 A0A0G2JRQ6 117 aa11.18□□□□□ -0.62
CSPG4-201ENST00000308508 ATOX1O00244 68 aa11.18□□□□□ -0.62
CSPG4-201ENST00000308508 CACNA1GO43497 2377 aa11.18□□□□□ -0.62
CSPG4-201ENST00000308508 A0A1W2PPI3 338 aa11.17□□□□□ -0.62
CSPG4-201ENST00000308508 IGKV1-16P04430 117 aa11.17□□□□□ -0.62
CSPG4-201ENST00000308508 TRBV19A0A075B6N1 114 aa11.17□□□□□ -0.62
CSPG4-201ENST00000308508 F6UB75 175 aa11.17□□□□□ -0.62
CSPG4-201ENST00000308508 K7EMI3 77 aa11.17□□□□□ -0.62
CSPG4-201ENST00000308508 Q6ZRM9 215 aa11.17□□□□□ -0.62
CSPG4-201ENST00000308508 NTN5Q8WTR8 489 aaPredicted RBP11.17□□□□□ -0.62
CSPG4-201ENST00000308508 CFHR4Q92496 578 aa11.17□□□□□ -0.62
CSPG4-201ENST00000308508 PYGO2Q9BRQ0 406 aa11.17□□□□□ -0.62
CSPG4-201ENST00000308508 B4DSR2 109 aa11.17□□□□□ -0.62
CSPG4-201ENST00000308508 C20orf78Q9BR46 151 aa11.17□□□□□ -0.62
CSPG4-201ENST00000308508 SMIM2Q9BVW6 85 aa11.17□□□□□ -0.62
CSPG4-201ENST00000308508 ACACAQ13085 2346 aa11.17□□□□□ -0.62
CSPG4-201ENST00000308508 BAALC-AS2P0C853 105 aa11.16□□□□□ -0.62
CSPG4-201ENST00000308508 C20orf204Q6ZNR8 217 aa11.16□□□□□ -0.62
CSPG4-201ENST00000308508 ARHGAP21Q5T5U3 1957 aa11.16□□□□□ -0.62
CSPG4-201ENST00000308508 TRAV26-2A0A0B4J265 109 aa11.16□□□□□ -0.62
CSPG4-201ENST00000308508 AMTNQ6UX39 209 aa11.16□□□□□ -0.62
CSPG4-201ENST00000308508 EFNA2O43921 213 aa11.16□□□□□ -0.62
CSPG4-201ENST00000308508 TMEM14CQ9P0S9 112 aa11.16□□□□□ -0.62
CSPG4-201ENST00000308508 SMIM20Q8N5G0 67 aa11.15□□□□□ -0.62
CSPG4-201ENST00000308508 FLVCR1-AS1Q8TAF5 88 aa11.15□□□□□ -0.62
CSPG4-201ENST00000308508 PCNX1Q96RV3 2341 aa11.15□□□□□ -0.62
CSPG4-201ENST00000308508 IGKV1D-17A0A075B6S4 117 aa11.15□□□□□ -0.62
CSPG4-201ENST00000308508 IGHV1OR15-1A0A075B7D0 117 aa11.15□□□□□ -0.62
CSPG4-201ENST00000308508 PAX9P55771 341 aa11.15□□□□□ -0.62
CSPG4-201ENST00000308508 KNCNA6PVL3 124 aa11.15□□□□□ -0.62
CSPG4-201ENST00000308508 CHKB-CPT1BH3BT56 60 aa11.15□□□□□ -0.62
CSPG4-201ENST00000308508 CFC1BP0CG36 223 aa11.15□□□□□ -0.62
CSPG4-201ENST00000308508 CFC1P0CG37 223 aa11.15□□□□□ -0.62
CSPG4-201ENST00000308508 SPINK13Q1W4C9 94 aa11.15□□□□□ -0.62
CSPG4-201ENST00000308508 TCF20Q9UGU0 1960 aaKnown RBP11.15□□□□□ -0.62
CSPG4-201ENST00000308508 PINLYPA6NC86 204 aa11.15□□□□□ -0.63
CSPG4-201ENST00000308508 NXPH4O95158 308 aa11.15□□□□□ -0.63
CSPG4-201ENST00000308508 DEFB131AP59861 70 aa11.15□□□□□ -0.63
CSPG4-201ENST00000308508 CFHR1Q03591 330 aa11.14□□□□□ -0.63
CSPG4-201ENST00000308508 RNF114Q9Y508 228 aa11.14□□□□□ -0.63
CSPG4-201ENST00000308508 NDUFS7O75251 213 aa11.14□□□□□ -0.63
CSPG4-201ENST00000308508 PRR25Q96S07 402 aa11.14□□□□□ -0.63
CSPG4-201ENST00000308508 NDUFA4L2Q9NRX3 87 aa11.14□□□□□ -0.63
CSPG4-201ENST00000308508 DAD1P61803 113 aa11.14□□□□□ -0.63
CSPG4-201ENST00000308508 OVOL3O00110 214 aa11.14□□□□□ -0.63
CSPG4-201ENST00000308508 MLANAQ16655 118 aa11.14□□□□□ -0.63
CSPG4-201ENST00000308508 IGHV3-16A0A0C4DH30 117 aa11.14□□□□□ -0.63
CSPG4-201ENST00000308508 IGLC7A0M8Q6 106 aa11.14□□□□□ -0.63
CSPG4-201ENST00000308508 CCL25O15444 150 aa11.14□□□□□ -0.63
CSPG4-201ENST00000308508 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.14□□□□□ -0.63
CSPG4-201ENST00000308508 FUSP35637 526 aaKnown RBP eCLIP11.14□□□□□ -0.63
CSPG4-201ENST00000308508 F5H768 121 aa11.13□□□□□ -0.63
CSPG4-201ENST00000308508 RMI2Q96E14 147 aa11.13□□□□□ -0.63
CSPG4-201ENST00000308508 PRSS29PA6NIE9 313 aa11.13□□□□□ -0.63
CSPG4-201ENST00000308508 C8orf86Q6ZUL3 223 aa11.13□□□□□ -0.63
CSPG4-201ENST00000308508 H3BQ85 93 aa11.13□□□□□ -0.63
CSPG4-201ENST00000308508 CLPSL1A2RUU4 121 aa11.13□□□□□ -0.63
CSPG4-201ENST00000308508 CRYGCP07315 174 aa11.13□□□□□ -0.63
CSPG4-201ENST00000308508 LINC00205P59089 165 aa11.13□□□□□ -0.63
CSPG4-201ENST00000308508 KLK9Q9UKQ9 250 aa11.12□□□□□ -0.63
CSPG4-201ENST00000308508 WFDC9Q8NEX5 89 aa11.12□□□□□ -0.63
CSPG4-201ENST00000308508 SAA4P35542 130 aa11.12□□□□□ -0.63
CSPG4-201ENST00000308508 ZNRF2Q8NHG8 242 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms