RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 SLC35B3Q9H1N7 401 aa4.78□□□□□ -1.64
DEPDC4-201ENST00000299185 DNAH3Q8TD57 4116 aa4.78□□□□□ -1.64
DEPDC4-201ENST00000299185 A0A0J9YX75 114 aa4.77□□□□□ -1.65
DEPDC4-201ENST00000299185 LINC00862A6NCI5 91 aa4.77□□□□□ -1.65
DEPDC4-201ENST00000299185 PGPA6NDG6 321 aa4.77□□□□□ -1.65
DEPDC4-201ENST00000299185 C9JQL5 133 aa4.77□□□□□ -1.65
DEPDC4-201ENST00000299185 F6UZH7 168 aa4.77□□□□□ -1.65
DEPDC4-201ENST00000299185 ISLRO14498 428 aa4.77□□□□□ -1.65
DEPDC4-201ENST00000299185 IGHV4-30-4P0DP06 118 aa4.77□□□□□ -1.65
DEPDC4-201ENST00000299185 BCL2P10415 239 aa4.77□□□□□ -1.65
DEPDC4-201ENST00000299185 CNN1P51911 297 aaKnown RBP4.77□□□□□ -1.65
DEPDC4-201ENST00000299185 FHL2Q14192 279 aa4.77□□□□□ -1.65
DEPDC4-201ENST00000299185 GTSCR1Q86UQ5 136 aa4.77□□□□□ -1.65
DEPDC4-201ENST00000299185 NHLRC2Q8NBF2 726 aa4.77□□□□□ -1.65
DEPDC4-201ENST00000299185 OR4B1Q8NGF8 309 aa4.77□□□□□ -1.65
DEPDC4-201ENST00000299185 LYPD6BQ8NI32 183 aa4.77□□□□□ -1.65
DEPDC4-201ENST00000299185 SUN5Q8TC36 379 aa4.77□□□□□ -1.65
DEPDC4-201ENST00000299185 LINC00479Q96M42 142 aa4.77□□□□□ -1.65
DEPDC4-201ENST00000299185 FAM110AQ9BQ89 295 aa4.77□□□□□ -1.65
DEPDC4-201ENST00000299185 DERL1Q9BUN8 251 aa4.77□□□□□ -1.65
DEPDC4-201ENST00000299185 OTORQ9NRC9 128 aa4.77□□□□□ -1.65
DEPDC4-201ENST00000299185 TMEM167BQ9NRX6 74 aa4.77□□□□□ -1.65
DEPDC4-201ENST00000299185 MED9Q9NWA0 146 aa4.77□□□□□ -1.65
DEPDC4-201ENST00000299185 CLEC5AQ9NY25 188 aa4.77□□□□□ -1.65
DEPDC4-201ENST00000299185 AGRNO00468 2067 aa4.77□□□□□ -1.65
DEPDC4-201ENST00000299185 RYR3Q15413 4870 aa4.77□□□□□ -1.65
DEPDC4-201ENST00000299185 KMT2CQ8NEZ4 4911 aaKnown RBP4.77□□□□□ -1.65
DEPDC4-201ENST00000299185 VWFP04275 2813 aa4.77□□□□□ -1.65
DEPDC4-201ENST00000299185 TRAV12-2A0A075B6T6 113 aa4.76□□□□□ -1.65
DEPDC4-201ENST00000299185 TRAV2A0A0B4J234 112 aa4.76□□□□□ -1.65
DEPDC4-201ENST00000299185 TRAV1-1A0A0B4J248 108 aa4.76□□□□□ -1.65
DEPDC4-201ENST00000299185 DIRC3C9JPN6 131 aa4.76□□□□□ -1.65
DEPDC4-201ENST00000299185 C11orf94C9JXX5 98 aa4.76□□□□□ -1.65
DEPDC4-201ENST00000299185 M0R2Z0 102 aa4.76□□□□□ -1.65
DEPDC4-201ENST00000299185 PEX7O00628 323 aa4.76□□□□□ -1.65
DEPDC4-201ENST00000299185 FRMD6-AS1P0C7T7 363 aa4.76□□□□□ -1.65
DEPDC4-201ENST00000299185 RBMY1A1P0DJD3 496 aaKnown RBP4.76□□□□□ -1.65
DEPDC4-201ENST00000299185 RBMY1CP0DJD4 496 aa4.76□□□□□ -1.65
DEPDC4-201ENST00000299185 ID1P41134 155 aa4.76□□□□□ -1.65
DEPDC4-201ENST00000299185 MEOX2P50222 304 aa4.76□□□□□ -1.65
DEPDC4-201ENST00000299185 CEBPGP53567 150 aa4.76□□□□□ -1.65
DEPDC4-201ENST00000299185 SNRPD3P62318 126 aaKnown RBP4.76□□□□□ -1.65
DEPDC4-201ENST00000299185 PAFAH1B2P68402 229 aa4.76□□□□□ -1.65
DEPDC4-201ENST00000299185 RBMY1FQ15415 496 aaKnown RBP4.76□□□□□ -1.65
DEPDC4-201ENST00000299185 SPINK13Q1W4C9 94 aa4.76□□□□□ -1.65
DEPDC4-201ENST00000299185 AMTNQ6UX39 209 aa4.76□□□□□ -1.65
DEPDC4-201ENST00000299185 S100A7AQ86SG5 101 aa4.76□□□□□ -1.65
DEPDC4-201ENST00000299185 Q86TA4 180 aa4.76□□□□□ -1.65
DEPDC4-201ENST00000299185 TRPT1Q86TN4 253 aaKnown RBP4.76□□□□□ -1.65
DEPDC4-201ENST00000299185 OR8A1Q8NGG7 326 aa4.76□□□□□ -1.65
DEPDC4-201ENST00000299185 MRAPQ8TCY5 172 aa4.76□□□□□ -1.65
DEPDC4-201ENST00000299185 SAV1Q9H4B6 383 aaPredicted RBP4.76□□□□□ -1.65
DEPDC4-201ENST00000299185 MGAM2Q2M2H8 2515 aa4.76□□□□□ -1.65
DEPDC4-201ENST00000299185 PGPEP1LA6NFU8 196 aa4.75□□□□□ -1.65
DEPDC4-201ENST00000299185 C9orf118A6NHY6 69 aa4.75□□□□□ -1.65
DEPDC4-201ENST00000299185 H3BMM0 161 aa4.75□□□□□ -1.65
DEPDC4-201ENST00000299185 ZNF253O75346 499 aa4.75□□□□□ -1.65
DEPDC4-201ENST00000299185 IGLV2-11P01706 119 aa4.75□□□□□ -1.65
DEPDC4-201ENST00000299185 HBE1P02100 147 aa4.75□□□□□ -1.65
DEPDC4-201ENST00000299185 TCRAP04437 139 aa4.75□□□□□ -1.65
DEPDC4-201ENST00000299185 PRM2P04554 102 aa4.75□□□□□ -1.65
DEPDC4-201ENST00000299185 GIG44P09565 113 aaPredicted RBP4.75□□□□□ -1.65
DEPDC4-201ENST00000299185 CT45A10P0DMU9 189 aa4.75□□□□□ -1.65
DEPDC4-201ENST00000299185 HLA-DRB4P13762 266 aa4.75□□□□□ -1.65
DEPDC4-201ENST00000299185 S100A7P31151 101 aa4.75□□□□□ -1.65
DEPDC4-201ENST00000299185 AKR1C3P42330 323 aa4.75□□□□□ -1.65
DEPDC4-201ENST00000299185 PSG9Q00887 426 aa4.75□□□□□ -1.65
DEPDC4-201ENST00000299185 BTN1A1Q13410 526 aa4.75□□□□□ -1.65
DEPDC4-201ENST00000299185 PMS2P11Q13670 270 aa4.75□□□□□ -1.65
DEPDC4-201ENST00000299185 PDE6HQ13956 83 aa4.75□□□□□ -1.65
DEPDC4-201ENST00000299185 GUK1Q16774 197 aa4.75□□□□□ -1.65
DEPDC4-201ENST00000299185 ZNF506Q5JVG8 444 aa4.75□□□□□ -1.65
DEPDC4-201ENST00000299185 FOXI2Q6ZQN5 318 aa4.75□□□□□ -1.65
DEPDC4-201ENST00000299185 C5orf17Q8NAS9 161 aa4.75□□□□□ -1.65
DEPDC4-201ENST00000299185 TVP23CQ96ET8 276 aa4.75□□□□□ -1.65
DEPDC4-201ENST00000299185 AGPAT4-IT1Q9H0P7 198 aa4.75□□□□□ -1.65
DEPDC4-201ENST00000299185 AAMDCQ9H7C9 122 aa4.75□□□□□ -1.65
DEPDC4-201ENST00000299185 HLA-DRB4X5D2U9 266 aa4.75□□□□□ -1.65
DEPDC4-201ENST00000299185 SORL1Q92673 2214 aa4.74□□□□□ -1.65
DEPDC4-201ENST00000299185 A0A1W2PRE2 83 aa4.74□□□□□ -1.65
DEPDC4-201ENST00000299185 RAB19A4D1S5 217 aa4.74□□□□□ -1.65
DEPDC4-201ENST00000299185 CA1P00915 261 aaPredicted RBP4.74□□□□□ -1.65
DEPDC4-201ENST00000299185 CD5P06127 495 aa4.74□□□□□ -1.65
DEPDC4-201ENST00000299185 ZNF674Q2M3X9 581 aa4.74□□□□□ -1.65
DEPDC4-201ENST00000299185 DEFB135Q30KP9 77 aa4.74□□□□□ -1.65
DEPDC4-201ENST00000299185 DEFB121Q5J5C9 76 aa4.74□□□□□ -1.65
DEPDC4-201ENST00000299185 PRNTQ86SH4 94 aa4.74□□□□□ -1.65
DEPDC4-201ENST00000299185 COMMD7Q86VX2 200 aa4.74□□□□□ -1.65
DEPDC4-201ENST00000299185 STHQ8IWL8 128 aa4.74□□□□□ -1.65
DEPDC4-201ENST00000299185 CCDC28AQ8IWP9 274 aa4.74□□□□□ -1.65
DEPDC4-201ENST00000299185 SLC7A5P1Q8MH63 180 aa4.74□□□□□ -1.65
DEPDC4-201ENST00000299185 EIF4E3Q8N5X7 224 aaKnown RBP4.74□□□□□ -1.65
DEPDC4-201ENST00000299185 CYB561D1Q8N8Q1 229 aa4.74□□□□□ -1.65
DEPDC4-201ENST00000299185 CMTM2Q8TAZ6 248 aa4.74□□□□□ -1.65
DEPDC4-201ENST00000299185 C2CD4CQ8TF44 421 aa4.74□□□□□ -1.65
DEPDC4-201ENST00000299185 MRPL53Q96EL3 112 aaKnown RBP4.74□□□□□ -1.65
DEPDC4-201ENST00000299185 TUBA4BQ9H853 241 aa4.74□□□□□ -1.65
DEPDC4-201ENST00000299185 MANBALQ9NQG1 85 aa4.74□□□□□ -1.65
DEPDC4-201ENST00000299185 XCL2Q9UBD3 114 aa4.74□□□□□ -1.65
DEPDC4-201ENST00000299185 EPDR1Q9UM22 224 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms