RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 A0A1W2PS18 150 aa12.67□□□□□ -0.38
CCDC40-201ENST00000269318 RPLP1P05386 114 aaKnown RBP12.67□□□□□ -0.38
CCDC40-201ENST00000269318 ESDP10768 282 aa12.67□□□□□ -0.38
CCDC40-201ENST00000269318 ZNF80P51504 273 aaPredicted RBP12.67□□□□□ -0.38
CCDC40-201ENST00000269318 SIGLECL1Q8N7X8 197 aa12.67□□□□□ -0.38
CCDC40-201ENST00000269318 DAZ1Q9NQZ3 744 aaKnown RBP12.67□□□□□ -0.38
CCDC40-201ENST00000269318 CLEC5AQ9NY25 188 aa12.67□□□□□ -0.38
CCDC40-201ENST00000269318 FASNP49327 2511 aaKnown RBP12.66□□□□□ -0.38
CCDC40-201ENST00000269318 IGHV7-4-1A0A0J9YVY3 117 aa12.66□□□□□ -0.38
CCDC40-201ENST00000269318 A8MWP6 167 aa12.66□□□□□ -0.38
CCDC40-201ENST00000269318 F2Z2F3 143 aa12.66□□□□□ -0.38
CCDC40-201ENST00000269318 SOCS3O14543 225 aa12.66□□□□□ -0.38
CCDC40-201ENST00000269318 FOXE3Q13461 319 aa12.66□□□□□ -0.38
CCDC40-201ENST00000269318 TM4SF20Q53R12 229 aa12.66□□□□□ -0.38
CCDC40-201ENST00000269318 IL17RELQ6ZVW7 336 aa12.66□□□□□ -0.38
CCDC40-201ENST00000269318 Q8N2B8 174 aa12.66□□□□□ -0.38
CCDC40-201ENST00000269318 NIT2Q9NQR4 276 aa12.66□□□□□ -0.38
CCDC40-201ENST00000269318 K7EMT4 169 aa12.65□□□□□ -0.38
CCDC40-201ENST00000269318 OR10J3Q5JRS4 329 aa12.65□□□□□ -0.38
CCDC40-201ENST00000269318 TMEM18Q96B42 140 aa12.65□□□□□ -0.38
CCDC40-201ENST00000269318 HAX1O00165 279 aa12.65□□□□□ -0.38
CCDC40-201ENST00000269318 SERF1AO75920 110 aa12.65□□□□□ -0.38
CCDC40-201ENST00000269318 ELANEP08246 267 aa12.65□□□□□ -0.38
CCDC40-201ENST00000269318 SRIP30626 198 aa12.65□□□□□ -0.38
CCDC40-201ENST00000269318 RNF152Q8N8N0 203 aa12.65□□□□□ -0.38
CCDC40-201ENST00000269318 C16orf92Q96LL3 132 aa12.65□□□□□ -0.38
CCDC40-201ENST00000269318 C20orf173Q96LM9 149 aa12.65□□□□□ -0.38
CCDC40-201ENST00000269318 SSBP4Q9BWG4 385 aaPredicted RBP12.65□□□□□ -0.38
CCDC40-201ENST00000269318 RHPN1-AS1Q9BWJ2 59 aa12.65□□□□□ -0.38
CCDC40-201ENST00000269318 AGPAT4-IT1Q9H0P7 198 aa12.65□□□□□ -0.38
CCDC40-201ENST00000269318 FAM106AQ4KMX7 169 aa12.64□□□□□ -0.39
CCDC40-201ENST00000269318 TEX29Q8N6K0 151 aa12.64□□□□□ -0.39
CCDC40-201ENST00000269318 FOXC2Q99958 501 aa12.64□□□□□ -0.39
CCDC40-201ENST00000269318 NDFIP1Q9BT67 221 aa12.64□□□□□ -0.39
CCDC40-201ENST00000269318 KRTAP1-1Q07627 177 aa12.63□□□□□ -0.39
CCDC40-201ENST00000269318 Q6AWC8 147 aa12.63□□□□□ -0.39
CCDC40-201ENST00000269318 C9orf47Q6ZRZ4 202 aa12.63□□□□□ -0.39
CCDC40-201ENST00000269318 BAGE3Q86Y29 109 aa12.63□□□□□ -0.39
CCDC40-201ENST00000269318 DUX5Q96PT3 197 aa12.63□□□□□ -0.39
CCDC40-201ENST00000269318 SMPXQ9UHP9 88 aa12.63□□□□□ -0.39
CCDC40-201ENST00000269318 TMEM189A5PLL7 270 aa12.63□□□□□ -0.39
CCDC40-201ENST00000269318 PCP4L1A6NKN8 68 aa12.63□□□□□ -0.39
CCDC40-201ENST00000269318 BMI1P35226 326 aa12.63□□□□□ -0.39
CCDC40-201ENST00000269318 CDPF1Q6NVV7 123 aa12.63□□□□□ -0.39
CCDC40-201ENST00000269318 ZNF575Q86XF7 245 aa12.63□□□□□ -0.39
CCDC40-201ENST00000269318 PPP1R14DQ9NXH3 145 aa12.63□□□□□ -0.39
CCDC40-201ENST00000269318 A0A1B0GUT8 65 aa12.62□□□□□ -0.39
CCDC40-201ENST00000269318 LGALS1P09382 135 aaKnown RBP12.62□□□□□ -0.39
CCDC40-201ENST00000269318 ARMS2P0C7Q2 107 aa12.62□□□□□ -0.39
CCDC40-201ENST00000269318 EDN2P20800 178 aa12.62□□□□□ -0.39
CCDC40-201ENST00000269318 TMEM86BQ8N661 226 aa12.62□□□□□ -0.39
CCDC40-201ENST00000269318 NRN1Q9NPD7 142 aa12.62□□□□□ -0.39
CCDC40-201ENST00000269318 ZNF138P52744 262 aa12.61□□□□□ -0.39
CCDC40-201ENST00000269318 SRSF2Q01130 221 aaKnown RBP12.61□□□□□ -0.39
CCDC40-201ENST00000269318 GATD1Q8NB37 220 aa12.61□□□□□ -0.39
CCDC40-201ENST00000269318 UBE2E2Q96LR5 201 aa12.61□□□□□ -0.39
CCDC40-201ENST00000269318 ALKBH7Q9BT30 221 aaPredicted RBP12.61□□□□□ -0.39
CCDC40-201ENST00000269318 JOSD1Q15040 202 aaPredicted RBP12.61□□□□□ -0.39
CCDC40-201ENST00000269318 DNLZQ5SXM8 178 aa12.61□□□□□ -0.39
CCDC40-201ENST00000269318 TMEM78Q5T7P6 136 aa12.61□□□□□ -0.39
CCDC40-201ENST00000269318 C18orf32Q8TCD1 76 aa12.61□□□□□ -0.39
CCDC40-201ENST00000269318 RCHY1Q96PM5 261 aa12.61□□□□□ -0.39
CCDC40-201ENST00000269318 UFC1Q9Y3C8 167 aa12.61□□□□□ -0.39
CCDC40-201ENST00000269318 KLF5Q13887 457 aaPredicted RBP12.6□□□□□ -0.39
CCDC40-201ENST00000269318 PRR31Q5SQ13 230 aa12.6□□□□□ -0.39
CCDC40-201ENST00000269318 TMSB15BA0A087X1C1 80 aa12.6□□□□□ -0.39
CCDC40-201ENST00000269318 TMEM213A2RRL7 107 aa12.6□□□□□ -0.39
CCDC40-201ENST00000269318 FABP5P3A8MUU1 101 aa12.6□□□□□ -0.39
CCDC40-201ENST00000269318 RPS20P60866 119 aaKnown RBP12.6□□□□□ -0.39
CCDC40-201ENST00000269318 RIGQ13278 110 aa12.6□□□□□ -0.39
CCDC40-201ENST00000269318 ZNF738Q8NE65 137 aa12.6□□□□□ -0.39
CCDC40-201ENST00000269318 CCDC168Q8NDH2 2452 aa12.59□□□□□ -0.39
CCDC40-201ENST00000269318 AKAP9Q99996 3911 aa12.59□□□□□ -0.39
CCDC40-201ENST00000269318 FLNAP21333 2647 aaKnown RBP12.59□□□□□ -0.39
CCDC40-201ENST00000269318 A0A1B0GW15 77 aa12.59□□□□□ -0.39
CCDC40-201ENST00000269318 PAFAH1B2P68402 229 aa12.59□□□□□ -0.39
CCDC40-201ENST00000269318 FAM181BA6NEQ2 426 aa12.58□□□□□ -0.4
CCDC40-201ENST00000269318 CD5LO43866 347 aa12.58□□□□□ -0.4
CCDC40-201ENST00000269318 RPL11P62913 178 aaKnown RBP12.58□□□□□ -0.4
CCDC40-201ENST00000269318 LINC01559Q495D7 138 aa12.58□□□□□ -0.4
CCDC40-201ENST00000269318 LYZL1Q6UWQ5 148 aa12.58□□□□□ -0.4
CCDC40-201ENST00000269318 REC114Q7Z4M0 266 aa12.58□□□□□ -0.4
CCDC40-201ENST00000269318 GSN-AS1Q9NRJ2 163 aa12.58□□□□□ -0.4
CCDC40-201ENST00000269318 UNC79Q9P2D8 2635 aa12.58□□□□□ -0.4
CCDC40-201ENST00000269318 IGHV4OR15-8A0A075B7B6 117 aa12.58□□□□□ -0.4
CCDC40-201ENST00000269318 A0A087WW49 117 aa12.58□□□□□ -0.4
CCDC40-201ENST00000269318 IGLC6P0CF74 106 aa12.58□□□□□ -0.4
CCDC40-201ENST00000269318 ZNF705DP0CH99 300 aaPredicted RBP12.58□□□□□ -0.4
CCDC40-201ENST00000269318 ZNF705BP0CI00 300 aaPredicted RBP12.58□□□□□ -0.4
CCDC40-201ENST00000269318 IQCJQ1A5X6 159 aa12.58□□□□□ -0.4
CCDC40-201ENST00000269318 TPPP3Q9BW30 176 aa12.58□□□□□ -0.4
CCDC40-201ENST00000269318 LENEPQ9Y5L5 61 aa12.58□□□□□ -0.4
CCDC40-201ENST00000269318 LOC102724200A0A096LPH7 203 aaPredicted RBP12.57□□□□□ -0.4
CCDC40-201ENST00000269318 LGALS9O00182 355 aa12.57□□□□□ -0.4
CCDC40-201ENST00000269318 OVOL1O14753 267 aa12.57□□□□□ -0.4
CCDC40-201ENST00000269318 CTRLP40313 264 aa12.57□□□□□ -0.4
CCDC40-201ENST00000269318 S100A12P80511 92 aa12.57□□□□□ -0.4
CCDC40-201ENST00000269318 KCNS1Q96KK3 526 aa12.57□□□□□ -0.4
CCDC40-201ENST00000269318 ITPR2Q14571 2701 aa12.57□□□□□ -0.4
CCDC40-201ENST00000269318 DNAJC9-AS1A6NH13 148 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms