RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 ZNF80P51504 273 aaPredicted RBP12.49□□□□□ -0.41
USP4-201ENST00000265560 NDUFA6P56556 154 aa12.49□□□□□ -0.41
USP4-201ENST00000265560 HIST1H2BDP58876 126 aa12.49□□□□□ -0.41
USP4-201ENST00000265560 RAB4BP61018 213 aa12.49□□□□□ -0.41
USP4-201ENST00000265560 HIST1H2BCP62807 126 aa12.49□□□□□ -0.41
USP4-201ENST00000265560 HIST2H2BEQ16778 126 aa12.49□□□□□ -0.41
USP4-201ENST00000265560 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.49□□□□□ -0.41
USP4-201ENST00000265560 MUC21Q5SSG8 566 aa12.49□□□□□ -0.41
USP4-201ENST00000265560 ZNF738Q8NE65 137 aa12.49□□□□□ -0.41
USP4-201ENST00000265560 HIST1H2BHQ93079 126 aa12.49□□□□□ -0.41
USP4-201ENST00000265560 GRAMD2BQ96HH9 432 aa12.49□□□□□ -0.41
USP4-201ENST00000265560 HIST1H2BNQ99877 126 aa12.49□□□□□ -0.41
USP4-201ENST00000265560 HIST1H2BMQ99879 126 aa12.49□□□□□ -0.41
USP4-201ENST00000265560 TPPP3Q9BW30 176 aa12.49□□□□□ -0.41
USP4-201ENST00000265560 PDZD11Q5EBL8 140 aa12.49□□□□□ -0.41
USP4-201ENST00000265560 NEU1Q99519 415 aa12.49□□□□□ -0.41
USP4-201ENST00000265560 AGPAT4-IT1Q9H0P7 198 aa12.49□□□□□ -0.41
USP4-201ENST00000265560 MAST4O15021 2626 aa12.49□□□□□ -0.41
USP4-201ENST00000265560 A0A1W2PS18 150 aa12.48□□□□□ -0.41
USP4-201ENST00000265560 TMEM89A2RUT3 159 aa12.48□□□□□ -0.41
USP4-201ENST00000265560 OR2D3Q8NGH3 330 aa12.48□□□□□ -0.41
USP4-201ENST00000265560 DPF1Q92782 380 aa12.48□□□□□ -0.41
USP4-201ENST00000265560 CITED2Q99967 270 aaPredicted RBP12.48□□□□□ -0.41
USP4-201ENST00000265560 SRD5A3Q9H8P0 318 aa12.48□□□□□ -0.41
USP4-201ENST00000265560 HIGD1CA8MV81 97 aa12.48□□□□□ -0.41
USP4-201ENST00000265560 PRR25Q96S07 402 aa12.48□□□□□ -0.41
USP4-201ENST00000265560 NRN1Q9NPD7 142 aa12.48□□□□□ -0.41
USP4-201ENST00000265560 CD33P20138 364 aa12.48□□□□□ -0.41
USP4-201ENST00000265560 SLC50A1Q9BRV3 221 aa12.48□□□□□ -0.41
USP4-201ENST00000265560 RNASE1P07998 156 aaKnown RBP12.47□□□□□ -0.41
USP4-201ENST00000265560 HILS1P60008 231 aa12.47□□□□□ -0.41
USP4-201ENST00000265560 GFI1BQ5VTD9 330 aa12.47□□□□□ -0.41
USP4-201ENST00000265560 NUP35Q8NFH5 326 aa12.47□□□□□ -0.41
USP4-201ENST00000265560 GTSF1Q8WW33 167 aa12.47□□□□□ -0.41
USP4-201ENST00000265560 PGLYRP4Q96LB8 373 aa12.47□□□□□ -0.41
USP4-201ENST00000265560 C19orf71A6NCJ1 209 aa12.47□□□□□ -0.41
USP4-201ENST00000265560 S100A9P06702 114 aaKnown RBP12.47□□□□□ -0.41
USP4-201ENST00000265560 CAMPP49913 170 aa12.47□□□□□ -0.41
USP4-201ENST00000265560 RNF152Q8N8N0 203 aa12.47□□□□□ -0.41
USP4-201ENST00000265560 UFC1Q9Y3C8 167 aa12.47□□□□□ -0.41
USP4-201ENST00000265560 TRAPPC1Q9Y5R8 145 aa12.47□□□□□ -0.41
USP4-201ENST00000265560 A0A1B0GUS0 222 aa12.46□□□□□ -0.41
USP4-201ENST00000265560 AKR1D1P51857 326 aa12.46□□□□□ -0.41
USP4-201ENST00000265560 KIAA1644Q3SXP7 199 aa12.46□□□□□ -0.41
USP4-201ENST00000265560 ADAMTSL5Q6ZMM2 481 aa12.46□□□□□ -0.41
USP4-201ENST00000265560 DLX4Q92988 240 aaPredicted RBP12.46□□□□□ -0.41
USP4-201ENST00000265560 RPP21Q9H633 154 aaKnown RBP12.46□□□□□ -0.41
USP4-201ENST00000265560 ZNF253O75346 499 aa12.46□□□□□ -0.41
USP4-201ENST00000265560 CDX1P47902 265 aaPredicted RBP12.46□□□□□ -0.41
USP4-201ENST00000265560 OR1N2Q8NGR9 330 aa12.46□□□□□ -0.41
USP4-201ENST00000265560 ZFP30Q9Y2G7 519 aa12.46□□□□□ -0.41
USP4-201ENST00000265560 ZNF688P0C7X2 276 aa12.46□□□□□ -0.42
USP4-201ENST00000265560 BTF3L4Q96K17 158 aa12.46□□□□□ -0.42
USP4-201ENST00000265560 SMIM27A0A1W2PRY6 76 aa12.45□□□□□ -0.42
USP4-201ENST00000265560 PHOX2AO14813 284 aa12.45□□□□□ -0.42
USP4-201ENST00000265560 KIR3DS1Q14943 382 aa12.45□□□□□ -0.42
USP4-201ENST00000265560 C2orf70A6NJV1 201 aa12.45□□□□□ -0.42
USP4-201ENST00000265560 SNURFLB1AK76 121 aa12.45□□□□□ -0.42
USP4-201ENST00000265560 IGKV3-20P01619 116 aa12.45□□□□□ -0.42
USP4-201ENST00000265560 CT45A10P0DMU9 189 aa12.45□□□□□ -0.42
USP4-201ENST00000265560 FAM231DQ6ZW35 169 aa12.45□□□□□ -0.42
USP4-201ENST00000265560 SSBP4Q9BWG4 385 aaPredicted RBP12.45□□□□□ -0.42
USP4-201ENST00000265560 SOCS3O14543 225 aa12.44□□□□□ -0.42
USP4-201ENST00000265560 SH2D1AO60880 128 aa12.44□□□□□ -0.42
USP4-201ENST00000265560 WIPF2Q8TF74 440 aaPredicted RBP12.44□□□□□ -0.42
USP4-201ENST00000265560 MS4A6AQ9H2W1 248 aa12.44□□□□□ -0.42
USP4-201ENST00000265560 LINC01619G3V211 115 aa12.44□□□□□ -0.42
USP4-201ENST00000265560 KLF5Q13887 457 aaPredicted RBP12.44□□□□□ -0.42
USP4-201ENST00000265560 TRRAPQ9Y4A5 3859 aa12.44□□□□□ -0.42
USP4-201ENST00000265560 CYSRT1A8MQ03 144 aa12.44□□□□□ -0.42
USP4-201ENST00000265560 K7EMT4 169 aa12.44□□□□□ -0.42
USP4-201ENST00000265560 HIST1H1AQ02539 215 aaPredicted RBP12.44□□□□□ -0.42
USP4-201ENST00000265560 GDF5OSQ5U4N7 250 aa12.44□□□□□ -0.42
USP4-201ENST00000265560 TSKUQ8WUA8 353 aa12.44□□□□□ -0.42
USP4-201ENST00000265560 GRIFINA4D1Z8 144 aa12.43□□□□□ -0.42
USP4-201ENST00000265560 RAX2Q96IS3 184 aa12.43□□□□□ -0.42
USP4-201ENST00000265560 TMEM78Q5T7P6 136 aa12.43□□□□□ -0.42
USP4-201ENST00000265560 C4orf3Q8WVX3 66 aa12.43□□□□□ -0.42
USP4-201ENST00000265560 BIN3Q9NQY0 253 aa12.43□□□□□ -0.42
USP4-201ENST00000265560 CLEC5AQ9NY25 188 aa12.43□□□□□ -0.42
USP4-201ENST00000265560 TYMSP04818 313 aa12.42□□□□□ -0.42
USP4-201ENST00000265560 DCANP1Q8TF63 244 aa12.42□□□□□ -0.42
USP4-201ENST00000265560 NAT8BQ9UHF3 227 aa12.42□□□□□ -0.42
USP4-201ENST00000265560 RNF114Q9Y508 228 aa12.42□□□□□ -0.42
USP4-201ENST00000265560 ORM1P02763 201 aa12.42□□□□□ -0.42
USP4-201ENST00000265560 NSUN5P1Q3KNT7 163 aa12.42□□□□□ -0.42
USP4-201ENST00000265560 ACTL10Q5JWF8 245 aa12.42□□□□□ -0.42
USP4-201ENST00000265560 PSMG4Q5JS54 123 aa12.42□□□□□ -0.42
USP4-201ENST00000265560 MRPL18Q9H0U6 180 aaKnown RBP12.42□□□□□ -0.42
USP4-201ENST00000265560 ZNF492Q9P255 531 aa12.42□□□□□ -0.42
USP4-201ENST00000265560 STAB1Q9NY15 2570 aa12.41□□□□□ -0.42
USP4-201ENST00000265560 C5orf52A6NGY3 159 aa12.41□□□□□ -0.42
USP4-201ENST00000265560 PRR9Q5T870 116 aa12.41□□□□□ -0.42
USP4-201ENST00000265560 SMIM12Q96EX1 92 aa12.41□□□□□ -0.42
USP4-201ENST00000265560 IZUMO1RA6ND01 250 aa12.41□□□□□ -0.42
USP4-201ENST00000265560 A8MWL6 223 aa12.41□□□□□ -0.42
USP4-201ENST00000265560 FAM162BQ5T6X4 162 aa12.41□□□□□ -0.42
USP4-201ENST00000265560 SCGB2A2Q13296 93 aa12.4□□□□□ -0.42
USP4-201ENST00000265560 SAPCD1Q5SSQ6 148 aa12.4□□□□□ -0.42
USP4-201ENST00000265560 SPRY2O43597 315 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms