RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 PTPRQQ9UMZ3 2332 aa10.32□□□□□ -0.76
NUP54-201ENST00000264883 TMEM8BA6NDV4 472 aa10.32□□□□□ -0.76
NUP54-201ENST00000264883 IGLV2-23P01705 113 aa10.32□□□□□ -0.76
NUP54-201ENST00000264883 TWIST1Q15672 202 aa10.32□□□□□ -0.76
NUP54-201ENST00000264883 TMEM75Q8N9X5 138 aa10.32□□□□□ -0.76
NUP54-201ENST00000264883 DEFB108BQ8NET1 73 aa10.32□□□□□ -0.76
NUP54-201ENST00000264883 DLX4Q92988 240 aaPredicted RBP10.32□□□□□ -0.76
NUP54-201ENST00000264883 FAM110AQ9BQ89 295 aa10.32□□□□□ -0.76
NUP54-201ENST00000264883 TMEM14CQ9P0S9 112 aa10.32□□□□□ -0.76
NUP54-201ENST00000264883 ZNRD1Q9P1U0 126 aa10.32□□□□□ -0.76
NUP54-201ENST00000264883 TMSB15BA0A087X1C1 80 aa10.32□□□□□ -0.76
NUP54-201ENST00000264883 K7ENP7 123 aa10.32□□□□□ -0.76
NUP54-201ENST00000264883 UCNP55089 124 aa10.32□□□□□ -0.76
NUP54-201ENST00000264883 TMEM160Q9NX00 188 aa10.32□□□□□ -0.76
NUP54-201ENST00000264883 RAI1Q7Z5J4 1906 aaPredicted RBP10.32□□□□□ -0.76
NUP54-201ENST00000264883 IGF2RP11717 2491 aa10.31□□□□□ -0.76
NUP54-201ENST00000264883 TEX29Q8N6K0 151 aa10.31□□□□□ -0.76
NUP54-201ENST00000264883 NUP37Q8NFH4 326 aa10.31□□□□□ -0.76
NUP54-201ENST00000264883 PPDPFLQ8WWR9 84 aa10.31□□□□□ -0.76
NUP54-201ENST00000264883 TMEM158Q8WZ71 300 aa10.31□□□□□ -0.76
NUP54-201ENST00000264883 MAP1LC3AQ9H492 121 aa10.31□□□□□ -0.76
NUP54-201ENST00000264883 HIGD1AQ9Y241 93 aa10.31□□□□□ -0.76
NUP54-201ENST00000264883 DSCAMO60469 2012 aa10.31□□□□□ -0.76
NUP54-201ENST00000264883 NBEAQ8NFP9 2946 aa10.31□□□□□ -0.76
NUP54-201ENST00000264883 HOXA3O43365 443 aaPredicted RBP10.31□□□□□ -0.76
NUP54-201ENST00000264883 ATP5LO75964 103 aa10.31□□□□□ -0.76
NUP54-201ENST00000264883 PRB4P10163 310 aaPredicted RBP10.31□□□□□ -0.76
NUP54-201ENST00000264883 MORN3Q6PF18 240 aaPredicted RBP10.31□□□□□ -0.76
NUP54-201ENST00000264883 VCX2Q9H322 139 aa10.31□□□□□ -0.76
NUP54-201ENST00000264883 SVILO95425 2214 aa10.3□□□□□ -0.76
NUP54-201ENST00000264883 TRBV7-3A0A075B6L6 115 aa10.3□□□□□ -0.76
NUP54-201ENST00000264883 TRAV40A0A0B4J280 105 aa10.3□□□□□ -0.76
NUP54-201ENST00000264883 A0A1W2PPI3 338 aa10.3□□□□□ -0.76
NUP54-201ENST00000264883 RBP4P02753 201 aa10.3□□□□□ -0.76
NUP54-201ENST00000264883 AGRNO00468 2067 aa10.3□□□□□ -0.76
NUP54-201ENST00000264883 IL4P05112 153 aa10.3□□□□□ -0.76
NUP54-201ENST00000264883 ZNF474Q6S9Z5 364 aaPredicted RBP10.3□□□□□ -0.76
NUP54-201ENST00000264883 SEM1Q6ZVN7 128 aa10.3□□□□□ -0.76
NUP54-201ENST00000264883 CARD19Q96LW7 228 aa10.3□□□□□ -0.76
NUP54-201ENST00000264883 SLC25A39Q9BZJ4 359 aaPredicted RBP10.3□□□□□ -0.76
NUP54-201ENST00000264883 PIEZO2Q9H5I5 2752 aa10.29□□□□□ -0.76
NUP54-201ENST00000264883 FAM90A27PA6NNH2 459 aa10.29□□□□□ -0.76
NUP54-201ENST00000264883 PSMB2P49721 201 aa10.29□□□□□ -0.76
NUP54-201ENST00000264883 LINC01559Q495D7 138 aa10.29□□□□□ -0.76
NUP54-201ENST00000264883 PTH2Q96A98 100 aa10.29□□□□□ -0.76
NUP54-201ENST00000264883 MAP1BP46821 2468 aaKnown RBP10.29□□□□□ -0.76
NUP54-201ENST00000264883 LINC01546A6NGU7 62 aa10.29□□□□□ -0.76
NUP54-201ENST00000264883 THBDP07204 575 aa10.29□□□□□ -0.76
NUP54-201ENST00000264883 C8orf49Q96NF6 230 aa10.29□□□□□ -0.76
NUP54-201ENST00000264883 BSNQ9UPA5 3926 aa10.29□□□□□ -0.76
NUP54-201ENST00000264883 IGHV3-21A0A0B4J1V1 117 aa10.28□□□□□ -0.76
NUP54-201ENST00000264883 NCBP2LA6PVI3 153 aaKnown RBP10.28□□□□□ -0.76
NUP54-201ENST00000264883 LYZP61626 148 aa10.28□□□□□ -0.76
NUP54-201ENST00000264883 HCP5Q6MZN7 132 aa10.28□□□□□ -0.76
NUP54-201ENST00000264883 RAXQ9Y2V3 346 aa10.28□□□□□ -0.76
NUP54-201ENST00000264883 CNIH1O95406 144 aa10.28□□□□□ -0.76
NUP54-201ENST00000264883 NHLRC4P0CG21 123 aaPredicted RBP10.28□□□□□ -0.76
NUP54-201ENST00000264883 RPL27AP46776 148 aaKnown RBP10.28□□□□□ -0.76
NUP54-201ENST00000264883 TMEM200BQ69YZ2 307 aa10.28□□□□□ -0.76
NUP54-201ENST00000264883 TEN1Q86WV5 123 aa10.28□□□□□ -0.76
NUP54-201ENST00000264883 RPEQ96AT9 228 aa10.28□□□□□ -0.76
NUP54-201ENST00000264883 MRPL35Q9NZE8 188 aaKnown RBP10.28□□□□□ -0.76
NUP54-201ENST00000264883 NAV3Q8IVL0 2385 aa10.27□□□□□ -0.76
NUP54-201ENST00000264883 PRR14LQ5THK1 2151 aa10.27□□□□□ -0.77
NUP54-201ENST00000264883 NDUFB3O43676 98 aa10.27□□□□□ -0.77
NUP54-201ENST00000264883 ZNF688P0C7X2 276 aa10.27□□□□□ -0.77
NUP54-201ENST00000264883 CD40P25942 277 aa10.27□□□□□ -0.77
NUP54-201ENST00000264883 LYPD1Q8N2G4 141 aa10.27□□□□□ -0.77
NUP54-201ENST00000264883 NXT2Q9NPJ8 142 aaKnown RBP10.27□□□□□ -0.77
NUP54-201ENST00000264883 LINC01619G3V211 115 aa10.26□□□□□ -0.77
NUP54-201ENST00000264883 CCL3L1P16619 93 aa10.26□□□□□ -0.77
NUP54-201ENST00000264883 RPL32P62910 135 aaKnown RBP10.26□□□□□ -0.77
NUP54-201ENST00000264883 SMIM20Q8N5G0 67 aa10.26□□□□□ -0.77
NUP54-201ENST00000264883 C17orf77Q96MU5 243 aa10.26□□□□□ -0.77
NUP54-201ENST00000264883 TLN1Q9Y490 2541 aaKnown RBP10.26□□□□□ -0.77
NUP54-201ENST00000264883 DSPP15924 2871 aaKnown RBP10.26□□□□□ -0.77
NUP54-201ENST00000264883 INTS1Q8N201 2190 aaKnown RBP10.26□□□□□ -0.77
NUP54-201ENST00000264883 TRBV19A0A075B6N1 114 aa10.26□□□□□ -0.77
NUP54-201ENST00000264883 LOC107984156A0A0G2JMH3 177 aa10.26□□□□□ -0.77
NUP54-201ENST00000264883 SH2D1AO60880 128 aa10.26□□□□□ -0.77
NUP54-201ENST00000264883 ARL17AQ8IVW1 177 aa10.26□□□□□ -0.77
NUP54-201ENST00000264883 Q8NA96 180 aa10.26□□□□□ -0.77
NUP54-201ENST00000264883 SRSF8Q9BRL6 282 aaKnown RBP10.26□□□□□ -0.77
NUP54-201ENST00000264883 C17orf100A8MU93 164 aa10.25□□□□□ -0.77
NUP54-201ENST00000264883 MRGPRG-AS1Q2M3A8 158 aa10.25□□□□□ -0.77
NUP54-201ENST00000264883 CITED1Q99966 193 aa10.25□□□□□ -0.77
NUP54-201ENST00000264883 TMEM262E9PQX1 116 aa10.25□□□□□ -0.77
NUP54-201ENST00000264883 SIGLEC15Q6ZMC9 328 aa10.25□□□□□ -0.77
NUP54-201ENST00000264883 NGBQ9NPG2 151 aa10.25□□□□□ -0.77
NUP54-201ENST00000264883 FAM215AQ9Y5M1 114 aa10.25□□□□□ -0.77
NUP54-201ENST00000264883 NCOR2Q9Y618 2525 aa10.24□□□□□ -0.77
NUP54-201ENST00000264883 GAGE12JA6NER3 117 aa10.24□□□□□ -0.77
NUP54-201ENST00000264883 LINC01549A6NIU2 74 aa10.24□□□□□ -0.77
NUP54-201ENST00000264883 LINC01548A6NM66 108 aa10.24□□□□□ -0.77
NUP54-201ENST00000264883 GAGE7O76087 117 aa10.24□□□□□ -0.77
NUP54-201ENST00000264883 GAS8-AS1O95177 125 aa10.24□□□□□ -0.77
NUP54-201ENST00000264883 TNFRSF6BO95407 300 aa10.24□□□□□ -0.77
NUP54-201ENST00000264883 CRYGBP07316 175 aa10.24□□□□□ -0.77
NUP54-201ENST00000264883 GAGE12FP0CL80 117 aa10.24□□□□□ -0.77
NUP54-201ENST00000264883 GAGE12GP0CL81 117 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms