RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 ARHGAP21Q5T5U3 1957 aa10.64□□□□□ -0.71
LDLR-201ENST00000252444 SRSF3P84103 164 aaKnown RBP10.64□□□□□ -0.71
LDLR-201ENST00000252444 C20orf78Q9BR46 151 aa10.64□□□□□ -0.71
LDLR-201ENST00000252444 GGTLC3B5MD39 225 aa10.64□□□□□ -0.71
LDLR-201ENST00000252444 IGKV1-17P01599 117 aa10.64□□□□□ -0.71
LDLR-201ENST00000252444 Q0VG73 95 aa10.64□□□□□ -0.71
LDLR-201ENST00000252444 IL17DQ8TAD2 202 aa10.64□□□□□ -0.71
LDLR-201ENST00000252444 PLNP26678 52 aa10.64□□□□□ -0.71
LDLR-201ENST00000252444 PSMG3-AS1Q96PY0 264 aa10.64□□□□□ -0.71
LDLR-201ENST00000252444 M0R2P5 195 aa10.64□□□□□ -0.71
LDLR-201ENST00000252444 BUB3O43684 328 aa10.64□□□□□ -0.71
LDLR-201ENST00000252444 SHISA2Q6UWI4 295 aa10.64□□□□□ -0.71
LDLR-201ENST00000252444 C9orf47Q6ZRZ4 202 aa10.64□□□□□ -0.71
LDLR-201ENST00000252444 CRIP2P52943 208 aaPredicted RBP10.63□□□□□ -0.71
LDLR-201ENST00000252444 VAMP3Q15836 100 aa10.63□□□□□ -0.71
LDLR-201ENST00000252444 RPL35AP18077 110 aaKnown RBP10.63□□□□□ -0.71
LDLR-201ENST00000252444 DYSFO75923 2080 aa10.63□□□□□ -0.71
LDLR-201ENST00000252444 NMUP48645 174 aa10.63□□□□□ -0.71
LDLR-201ENST00000252444 DAD1P61803 113 aa10.63□□□□□ -0.71
LDLR-201ENST00000252444 APOMO95445 188 aa10.63□□□□□ -0.71
LDLR-201ENST00000252444 DMRT1Q9Y5R6 373 aa10.63□□□□□ -0.71
LDLR-201ENST00000252444 C2orf70A6NJV1 201 aa10.62□□□□□ -0.71
LDLR-201ENST00000252444 TPRP12270 2363 aaKnown RBP10.62□□□□□ -0.71
LDLR-201ENST00000252444 KIAA1644Q3SXP7 199 aa10.62□□□□□ -0.71
LDLR-201ENST00000252444 PSMB2P49721 201 aa10.62□□□□□ -0.71
LDLR-201ENST00000252444 OR5A1Q8NGJ0 315 aa10.62□□□□□ -0.71
LDLR-201ENST00000252444 VGLL1Q99990 258 aa10.62□□□□□ -0.71
LDLR-201ENST00000252444 CD28P10747 220 aa10.62□□□□□ -0.71
LDLR-201ENST00000252444 MEIG1Q5JSS6 88 aa10.62□□□□□ -0.71
LDLR-201ENST00000252444 CA1P00915 261 aaPredicted RBP10.62□□□□□ -0.71
LDLR-201ENST00000252444 LOC102724200A0A096LPH7 203 aaPredicted RBP10.61□□□□□ -0.71
LDLR-201ENST00000252444 ARMS2P0C7Q2 107 aa10.61□□□□□ -0.71
LDLR-201ENST00000252444 RASL10AQ92737 203 aa10.61□□□□□ -0.71
LDLR-201ENST00000252444 FOXA3P55318 350 aaPredicted RBP10.61□□□□□ -0.71
LDLR-201ENST00000252444 UBE2DNLQ8IWF7 75 aa10.61□□□□□ -0.71
LDLR-201ENST00000252444 FAM104BQ5XKR9 115 aa10.61□□□□□ -0.71
LDLR-201ENST00000252444 Q8N8P6 123 aa10.61□□□□□ -0.71
LDLR-201ENST00000252444 COL5A1-AS1Q5SY13 56 aa10.61□□□□□ -0.71
LDLR-201ENST00000252444 COLCA2A8K830 154 aa10.6□□□□□ -0.71
LDLR-201ENST00000252444 ZNF256Q9Y2P7 627 aaPredicted RBP10.6□□□□□ -0.71
LDLR-201ENST00000252444 CHTOPQ9Y3Y2 248 aaKnown RBP10.6□□□□□ -0.71
LDLR-201ENST00000252444 Q8TAT8 98 aa10.6□□□□□ -0.71
LDLR-201ENST00000252444 KLF12Q9Y4X4 402 aa10.6□□□□□ -0.71
LDLR-201ENST00000252444 ZGRF1Q86YA3 2104 aa10.6□□□□□ -0.71
LDLR-201ENST00000252444 I3L3M4 83 aa10.6□□□□□ -0.71
LDLR-201ENST00000252444 MALP21145 153 aa10.6□□□□□ -0.71
LDLR-201ENST00000252444 C22orf34Q6ZV56 151 aa10.6□□□□□ -0.71
LDLR-201ENST00000252444 NIT1Q86X76 327 aa10.6□□□□□ -0.71
LDLR-201ENST00000252444 IFI27L1Q96BM0 104 aa10.6□□□□□ -0.71
LDLR-201ENST00000252444 NDUFAF3Q9BU61 184 aa10.6□□□□□ -0.71
LDLR-201ENST00000252444 TEX43Q6ZNM6 134 aa10.6□□□□□ -0.71
LDLR-201ENST00000252444 BOD1L2Q8IYS8 172 aa10.6□□□□□ -0.71
LDLR-201ENST00000252444 TRAV9-2A0A087WT02 112 aa10.6□□□□□ -0.71
LDLR-201ENST00000252444 ERCC8Q13216 396 aa10.6□□□□□ -0.71
LDLR-201ENST00000252444 DERL1Q9BUN8 251 aa10.6□□□□□ -0.71
LDLR-201ENST00000252444 CACNA1BQ00975 2339 aa10.59□□□□□ -0.71
LDLR-201ENST00000252444 MDKP21741 143 aaPredicted RBP10.59□□□□□ -0.71
LDLR-201ENST00000252444 TCTAP57738 103 aa10.59□□□□□ -0.71
LDLR-201ENST00000252444 RHOHQ15669 191 aa10.59□□□□□ -0.71
LDLR-201ENST00000252444 FANCD2OSQ96PS1 177 aa10.59□□□□□ -0.71
LDLR-201ENST00000252444 CHCHD5Q9BSY4 110 aa10.59□□□□□ -0.71
LDLR-201ENST00000252444 INTS1Q8N201 2190 aaKnown RBP10.59□□□□□ -0.71
LDLR-201ENST00000252444 HINT1P49773 126 aaPredicted RBP10.59□□□□□ -0.71
LDLR-201ENST00000252444 EMP1P54849 157 aa10.59□□□□□ -0.71
LDLR-201ENST00000252444 HILS1P60008 231 aa10.59□□□□□ -0.71
LDLR-201ENST00000252444 TMEM170BQ5T4T1 132 aa10.59□□□□□ -0.71
LDLR-201ENST00000252444 SFTA2Q6UW10 78 aa10.59□□□□□ -0.71
LDLR-201ENST00000252444 MRPL52Q86TS9 123 aaKnown RBP10.59□□□□□ -0.71
LDLR-201ENST00000252444 SERF1AO75920 110 aa10.59□□□□□ -0.71
LDLR-201ENST00000252444 BCL6BQ8N143 479 aaPredicted RBP10.59□□□□□ -0.71
LDLR-201ENST00000252444 A0A087WX48 190 aa10.59□□□□□ -0.71
LDLR-201ENST00000252444 D6R8Y8 96 aa10.59□□□□□ -0.71
LDLR-201ENST00000252444 BLCAPP62952 87 aa10.59□□□□□ -0.71
LDLR-201ENST00000252444 V9GYV3 84 aa10.59□□□□□ -0.71
LDLR-201ENST00000252444 A8MWP6 167 aa10.58□□□□□ -0.72
LDLR-201ENST00000252444 IGKCP01834 107 aa10.58□□□□□ -0.72
LDLR-201ENST00000252444 AZU1P20160 251 aa10.58□□□□□ -0.72
LDLR-201ENST00000252444 ZNF876PQ49A33 203 aa10.58□□□□□ -0.72
LDLR-201ENST00000252444 HIST1H4GQ99525 98 aa10.58□□□□□ -0.72
LDLR-201ENST00000252444 MED13Q9UHV7 2174 aa10.58□□□□□ -0.72
LDLR-201ENST00000252444 IGHV4OR15-8A0A075B7B6 117 aa10.58□□□□□ -0.72
LDLR-201ENST00000252444 A0A087WW49 117 aa10.58□□□□□ -0.72
LDLR-201ENST00000252444 RBMY1BA6NDE4 496 aaKnown RBP10.58□□□□□ -0.72
LDLR-201ENST00000252444 RBMY1EA6NEQ0 496 aaKnown RBP10.58□□□□□ -0.72
LDLR-201ENST00000252444 RBMY1DP0C7P1 496 aaKnown RBP10.58□□□□□ -0.72
LDLR-201ENST00000252444 RBMY1A1P0DJD3 496 aaKnown RBP10.58□□□□□ -0.72
LDLR-201ENST00000252444 RBMY1CP0DJD4 496 aa10.58□□□□□ -0.72
LDLR-201ENST00000252444 SS18Q15532 418 aa10.58□□□□□ -0.72
LDLR-201ENST00000252444 IGF2BP2-AS1Q96M15 143 aa10.58□□□□□ -0.72
LDLR-201ENST00000252444 PAM16Q9Y3D7 125 aa10.58□□□□□ -0.72
LDLR-201ENST00000252444 TRBV25-1A0A075B6N4 114 aa10.57□□□□□ -0.72
LDLR-201ENST00000252444 C5orf52A6NGY3 159 aa10.57□□□□□ -0.72
LDLR-201ENST00000252444 SMIM9A6NGZ8 99 aa10.57□□□□□ -0.72
LDLR-201ENST00000252444 HTN3P15516 51 aa10.57□□□□□ -0.72
LDLR-201ENST00000252444 DEFB121Q5J5C9 76 aa10.57□□□□□ -0.72
LDLR-201ENST00000252444 RNF182Q8N6D2 247 aa10.57□□□□□ -0.72
LDLR-201ENST00000252444 RITA1Q96K30 269 aa10.57□□□□□ -0.72
LDLR-201ENST00000252444 MED12LQ86YW9 2145 aa10.57□□□□□ -0.72
LDLR-201ENST00000252444 AMN1Q8IY45 258 aa10.57□□□□□ -0.72
LDLR-201ENST00000252444 YLPM1P49750 1951 aaKnown RBP10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms