RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 IGHV3-74A0A0B4J1X5 117 aa17.27■□□□□ 0.35
CDX1-201ENST00000231656 IGFL4Q6B9Z1 124 aa17.27■□□□□ 0.35
CDX1-201ENST00000231656 IGKV2-40A0A087WW87 121 aaPredicted RBP17.26■□□□□ 0.35
CDX1-201ENST00000231656 IGKV2D-40P01614 121 aaPredicted RBP17.26■□□□□ 0.35
CDX1-201ENST00000231656 S100A2P29034 98 aa17.26■□□□□ 0.35
CDX1-201ENST00000231656 UNQ9165/PRO28630Q6UXU0 137 aa17.26■□□□□ 0.35
CDX1-201ENST00000231656 OR4B1Q8NGF8 309 aa17.26■□□□□ 0.35
CDX1-201ENST00000231656 HIGD1CA8MV81 97 aa17.25■□□□□ 0.35
CDX1-201ENST00000231656 A8MWL6 223 aa17.25■□□□□ 0.35
CDX1-201ENST00000231656 TCTEX1D4Q5JR98 221 aa17.25■□□□□ 0.35
CDX1-201ENST00000231656 RASL11AQ6T310 242 aa17.25■□□□□ 0.35
CDX1-201ENST00000231656 GTSF1Q8WW33 167 aa17.25■□□□□ 0.35
CDX1-201ENST00000231656 UBE2E2Q96LR5 201 aa17.25■□□□□ 0.35
CDX1-201ENST00000231656 HIST1H2BLQ99880 126 aa17.25■□□□□ 0.35
CDX1-201ENST00000231656 SLC50A1Q9BRV3 221 aa17.25■□□□□ 0.35
CDX1-201ENST00000231656 FBLL1A6NHQ2 334 aaKnown RBP17.24■□□□□ 0.35
CDX1-201ENST00000231656 CRIP1P50238 77 aa17.24■□□□□ 0.35
CDX1-201ENST00000231656 LCN12Q6JVE5 192 aa17.24■□□□□ 0.35
CDX1-201ENST00000231656 TCF24Q7RTU0 167 aa17.24■□□□□ 0.35
CDX1-201ENST00000231656 GLMPQ8WWB7 406 aa17.24■□□□□ 0.35
CDX1-201ENST00000231656 GFRA4Q9GZZ7 299 aa17.24■□□□□ 0.35
CDX1-201ENST00000231656 ZNF705FA8MVS1 300 aaPredicted RBP17.23■□□□□ 0.35
CDX1-201ENST00000231656 COX8CQ7Z4L0 72 aa17.23■□□□□ 0.35
CDX1-201ENST00000231656 C8orf49Q96NF6 230 aa17.23■□□□□ 0.35
CDX1-201ENST00000231656 PEF1Q9UBV8 284 aaKnown RBP17.23■□□□□ 0.35
CDX1-201ENST00000231656 HLA-DQA1P01909 254 aa17.23■□□□□ 0.35
CDX1-201ENST00000231656 FABP4P15090 132 aa17.23■□□□□ 0.35
CDX1-201ENST00000231656 FAM209BQ5JX69 171 aa17.23■□□□□ 0.35
CDX1-201ENST00000231656 OR10D4PQ8NGN7 298 aa17.23■□□□□ 0.35
CDX1-201ENST00000231656 RNF114Q9Y508 228 aa17.23■□□□□ 0.35
CDX1-201ENST00000231656 TRAV8-2A0A0B4J237 113 aa17.22■□□□□ 0.35
CDX1-201ENST00000231656 A0A1B0GXF2 115 aa17.22■□□□□ 0.35
CDX1-201ENST00000231656 FAM231BA6NCW3 169 aa17.22■□□□□ 0.35
CDX1-201ENST00000231656 GDF5OSQ5U4N7 250 aa17.22■□□□□ 0.35
CDX1-201ENST00000231656 ATP5L2Q7Z4Y8 100 aa17.22■□□□□ 0.35
CDX1-201ENST00000231656 VGLL1Q99990 258 aa17.22■□□□□ 0.35
CDX1-201ENST00000231656 LGALS1P09382 135 aaKnown RBP17.21■□□□□ 0.35
CDX1-201ENST00000231656 RAB4BP61018 213 aa17.21■□□□□ 0.35
CDX1-201ENST00000231656 OR2D3Q8NGH3 330 aa17.21■□□□□ 0.35
CDX1-201ENST00000231656 A0A1B0GUS0 222 aa17.2■□□□□ 0.34
CDX1-201ENST00000231656 HAX1O00165 279 aa17.2■□□□□ 0.34
CDX1-201ENST00000231656 AMBPP02760 352 aa17.2■□□□□ 0.34
CDX1-201ENST00000231656 C8orf86Q6ZUL3 223 aa17.2■□□□□ 0.34
CDX1-201ENST00000231656 RNF182Q8N6D2 247 aa17.2■□□□□ 0.34
CDX1-201ENST00000231656 PRR25Q96S07 402 aa17.2■□□□□ 0.34
CDX1-201ENST00000231656 GRIFINA4D1Z8 144 aa17.2■□□□□ 0.34
CDX1-201ENST00000231656 PRAC2D3DTV9 90 aa17.2■□□□□ 0.34
CDX1-201ENST00000231656 PROK1P58294 105 aa17.2■□□□□ 0.34
CDX1-201ENST00000231656 SAPCD1Q5SSQ6 148 aa17.2■□□□□ 0.34
CDX1-201ENST00000231656 CRISP2P16562 243 aa17.19■□□□□ 0.34
CDX1-201ENST00000231656 RBPMS2Q6ZRY4 209 aaKnown RBP17.19■□□□□ 0.34
CDX1-201ENST00000231656 MRPL53Q96EL3 112 aaKnown RBP17.19■□□□□ 0.34
CDX1-201ENST00000231656 TP53TG3Q9ULZ0 132 aa17.19■□□□□ 0.34
CDX1-201ENST00000231656 RBAKDNA6NC62 111 aa17.18■□□□□ 0.34
CDX1-201ENST00000231656 CT45A10P0DMU9 189 aa17.18■□□□□ 0.34
CDX1-201ENST00000231656 GZMBP10144 247 aa17.18■□□□□ 0.34
CDX1-201ENST00000231656 KHDC1LQ5JSQ8 128 aa17.18■□□□□ 0.34
CDX1-201ENST00000231656 HIST2H2BDQ6DRA6 164 aa17.18■□□□□ 0.34
CDX1-201ENST00000231656 C18orf65Q6ZTR6 163 aa17.18■□□□□ 0.34
CDX1-201ENST00000231656 TMEM256Q8N2U0 113 aa17.18■□□□□ 0.34
CDX1-201ENST00000231656 Q8TAT8 98 aa17.18■□□□□ 0.34
CDX1-201ENST00000231656 PGLYRP4Q96LB8 373 aa17.18■□□□□ 0.34
CDX1-201ENST00000231656 PACRGQ96M98 296 aaPredicted RBP17.18■□□□□ 0.34
CDX1-201ENST00000231656 CD28P10747 220 aa17.17■□□□□ 0.34
CDX1-201ENST00000231656 C11orf44Q8N8P7 122 aa17.17■□□□□ 0.34
CDX1-201ENST00000231656 APCSP02743 223 aa17.17■□□□□ 0.34
CDX1-201ENST00000231656 FOXA3P55318 350 aaPredicted RBP17.17■□□□□ 0.34
CDX1-201ENST00000231656 Q0VG73 95 aa17.17■□□□□ 0.34
CDX1-201ENST00000231656 SLAQ13239 276 aa17.17■□□□□ 0.34
CDX1-201ENST00000231656 PYY3Q5JQD4 70 aa17.17■□□□□ 0.34
CDX1-201ENST00000231656 KIAA1644Q3SXP7 199 aa17.16■□□□□ 0.34
CDX1-201ENST00000231656 C4orf3Q8WVX3 66 aa17.16■□□□□ 0.34
CDX1-201ENST00000231656 NUPR1O60356 82 aa17.15■□□□□ 0.34
CDX1-201ENST00000231656 SH2D1AO60880 128 aa17.15■□□□□ 0.34
CDX1-201ENST00000231656 LINC00310P59036 64 aa17.15■□□□□ 0.34
CDX1-201ENST00000231656 HBBP68871 147 aa17.15■□□□□ 0.34
CDX1-201ENST00000231656 ERCC8Q13216 396 aa17.15■□□□□ 0.34
CDX1-201ENST00000231656 WFDC12Q8WWY7 111 aa17.15■□□□□ 0.34
CDX1-201ENST00000231656 A0A1W2PS18 150 aa17.15■□□□□ 0.34
CDX1-201ENST00000231656 CAMPP49913 170 aa17.15■□□□□ 0.34
CDX1-201ENST00000231656 FAM162BQ5T6X4 162 aa17.15■□□□□ 0.34
CDX1-201ENST00000231656 GPHB5Q86YW7 130 aa17.15■□□□□ 0.34
CDX1-201ENST00000231656 IGHV4OR15-8A0A075B7B6 117 aa17.14■□□□□ 0.33
CDX1-201ENST00000231656 A0A087WW49 117 aa17.14■□□□□ 0.33
CDX1-201ENST00000231656 IGHV7-4-1A0A0J9YVY3 117 aa17.14■□□□□ 0.33
CDX1-201ENST00000231656 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP17.14■□□□□ 0.33
CDX1-201ENST00000231656 KLHL30-AS1Q8NEE0 82 aa17.14■□□□□ 0.33
CDX1-201ENST00000231656 CITED2Q99967 270 aaPredicted RBP17.14■□□□□ 0.33
CDX1-201ENST00000231656 CLEC5AQ9NY25 188 aa17.14■□□□□ 0.33
CDX1-201ENST00000231656 F2Z2F3 143 aa17.13■□□□□ 0.33
CDX1-201ENST00000231656 ZNF80P51504 273 aaPredicted RBP17.13■□□□□ 0.33
CDX1-201ENST00000231656 DEFB136Q30KP8 78 aa17.13■□□□□ 0.33
CDX1-201ENST00000231656 K7EMT4 169 aa17.12■□□□□ 0.33
CDX1-201ENST00000231656 ESDP10768 282 aa17.12■□□□□ 0.33
CDX1-201ENST00000231656 TM4SF20Q53R12 229 aa17.12■□□□□ 0.33
CDX1-201ENST00000231656 TMEM18Q96B42 140 aa17.12■□□□□ 0.33
CDX1-201ENST00000231656 C16orf92Q96LL3 132 aa17.12■□□□□ 0.33
CDX1-201ENST00000231656 NDFIP1Q9BT67 221 aa17.12■□□□□ 0.33
CDX1-201ENST00000231656 NIT2Q9NQR4 276 aa17.12■□□□□ 0.33
CDX1-201ENST00000231656 DAZ1Q9NQZ3 744 aaKnown RBP17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms