RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 DNAH2Q9P225 4427 aa7.26□□□□□ -1.25
SCN1A-222ENST00000642141 TRAV12-3A0A0B4J271 114 aa7.25□□□□□ -1.25
SCN1A-222ENST00000642141 LYRM9A8MSI8 78 aa7.25□□□□□ -1.25
SCN1A-222ENST00000642141 RTL8CO15255 209 aa7.25□□□□□ -1.25
SCN1A-222ENST00000642141 CT45A10P0DMU9 189 aa7.25□□□□□ -1.25
SCN1A-222ENST00000642141 S100A11P31949 105 aa7.25□□□□□ -1.25
SCN1A-222ENST00000642141 CDKN1BP46527 198 aa7.25□□□□□ -1.25
SCN1A-222ENST00000642141 TAS2R60P59551 318 aa7.25□□□□□ -1.25
SCN1A-222ENST00000642141 B2MP61769 119 aa7.25□□□□□ -1.25
SCN1A-222ENST00000642141 NHLH2Q02577 135 aa7.25□□□□□ -1.25
SCN1A-222ENST00000642141 ERCC8Q13216 396 aa7.25□□□□□ -1.25
SCN1A-222ENST00000642141 IL15RAQ13261 267 aa7.25□□□□□ -1.25
SCN1A-222ENST00000642141 GFI1BQ5VTD9 330 aa7.25□□□□□ -1.25
SCN1A-222ENST00000642141 STX12Q86Y82 276 aa7.25□□□□□ -1.25
SCN1A-222ENST00000642141 THAP6Q8TBB0 222 aa7.25□□□□□ -1.25
SCN1A-222ENST00000642141 BLNKQ8WV28 456 aa7.25□□□□□ -1.25
SCN1A-222ENST00000642141 SAT2Q96F10 170 aaPredicted RBP7.25□□□□□ -1.25
SCN1A-222ENST00000642141 FAM210BQ96KR6 192 aa7.25□□□□□ -1.25
SCN1A-222ENST00000642141 SLC50A1Q9BRV3 221 aa7.25□□□□□ -1.25
SCN1A-222ENST00000642141 LYRM2Q9NU23 88 aaPredicted RBP7.25□□□□□ -1.25
SCN1A-222ENST00000642141 RNF24Q9Y225 148 aa7.25□□□□□ -1.25
SCN1A-222ENST00000642141 PXMP4Q9Y6I8 212 aa7.25□□□□□ -1.25
SCN1A-222ENST00000642141 PRSS29PA6NIE9 313 aa7.24□□□□□ -1.25
SCN1A-222ENST00000642141 M0R3E3 92 aa7.24□□□□□ -1.25
SCN1A-222ENST00000642141 PYYP10082 97 aa7.24□□□□□ -1.25
SCN1A-222ENST00000642141 CXCL2P19875 107 aa7.24□□□□□ -1.25
SCN1A-222ENST00000642141 TSPOP30536 169 aa7.24□□□□□ -1.25
SCN1A-222ENST00000642141 RPL29P47914 159 aaKnown RBP7.24□□□□□ -1.25
SCN1A-222ENST00000642141 HBG1P69891 147 aa7.24□□□□□ -1.25
SCN1A-222ENST00000642141 HBG2P69892 147 aa7.24□□□□□ -1.25
SCN1A-222ENST00000642141 IFITM3Q01628 133 aa7.24□□□□□ -1.25
SCN1A-222ENST00000642141 ASAH1Q13510 395 aa7.24□□□□□ -1.25
SCN1A-222ENST00000642141 VWC2Q2TAL6 325 aa7.24□□□□□ -1.25
SCN1A-222ENST00000642141 TMEM256Q8N2U0 113 aa7.24□□□□□ -1.25
SCN1A-222ENST00000642141 OR1L4Q8NGR5 311 aa7.24□□□□□ -1.25
SCN1A-222ENST00000642141 ENKURQ8TC29 256 aa7.24□□□□□ -1.25
SCN1A-222ENST00000642141 C16orf74Q96GX8 76 aa7.24□□□□□ -1.25
SCN1A-222ENST00000642141 ATG101Q9BSB4 218 aa7.24□□□□□ -1.25
SCN1A-222ENST00000642141 OR5AC2Q9NZP5 309 aa7.24□□□□□ -1.25
SCN1A-222ENST00000642141 TIMM8BQ9Y5J9 83 aaPredicted RBP7.24□□□□□ -1.25
SCN1A-222ENST00000642141 FAT2Q9NYQ8 4349 aa7.24□□□□□ -1.25
SCN1A-222ENST00000642141 GAGE12BA1L429 117 aa7.23□□□□□ -1.25
SCN1A-222ENST00000642141 CBY3A6NI87 242 aa7.23□□□□□ -1.25
SCN1A-222ENST00000642141 GAGE7O76087 117 aa7.23□□□□□ -1.25
SCN1A-222ENST00000642141 ATP5G1P05496 136 aa7.23□□□□□ -1.25
SCN1A-222ENST00000642141 GAGE12FP0CL80 117 aa7.23□□□□□ -1.25
SCN1A-222ENST00000642141 GAGE12GP0CL81 117 aa7.23□□□□□ -1.25
SCN1A-222ENST00000642141 GAGE12IP0CL82 117 aa7.23□□□□□ -1.25
SCN1A-222ENST00000642141 ATP5G3P48201 142 aa7.23□□□□□ -1.25
SCN1A-222ENST00000642141 OR5I1Q13606 314 aa7.23□□□□□ -1.25
SCN1A-222ENST00000642141 CLINT1Q14677 625 aa7.23□□□□□ -1.25
SCN1A-222ENST00000642141 LINC00336Q6ZUF6 198 aa7.23□□□□□ -1.25
SCN1A-222ENST00000642141 EXOC3-AS1Q8N2X6 119 aa7.23□□□□□ -1.25
SCN1A-222ENST00000642141 OR5C1Q8NGR4 320 aa7.23□□□□□ -1.25
SCN1A-222ENST00000642141 PFDN5Q99471 154 aa7.23□□□□□ -1.25
SCN1A-222ENST00000642141 KRTAP17-1Q9BYP8 105 aa7.23□□□□□ -1.25
SCN1A-222ENST00000642141 TIMM9Q9Y5J7 89 aa7.23□□□□□ -1.25
SCN1A-222ENST00000642141 DNAH17Q9UFH2 4485 aa7.23□□□□□ -1.25
SCN1A-222ENST00000642141 TRBV19A0A075B6N1 114 aa7.22□□□□□ -1.25
SCN1A-222ENST00000642141 H0YIZ8 118 aa7.22□□□□□ -1.25
SCN1A-222ENST00000642141 H7BYZ3 331 aa7.22□□□□□ -1.25
SCN1A-222ENST00000642141 UPK1BO75841 260 aa7.22□□□□□ -1.25
SCN1A-222ENST00000642141 NDUFB4O95168 129 aa7.22□□□□□ -1.25
SCN1A-222ENST00000642141 PTTG1O95997 202 aa7.22□□□□□ -1.25
SCN1A-222ENST00000642141 RNASE4P34096 147 aaKnown RBP7.22□□□□□ -1.25
SCN1A-222ENST00000642141 DEFA1P59665 94 aa7.22□□□□□ -1.25
SCN1A-222ENST00000642141 DEFA3P59666 94 aa7.22□□□□□ -1.25
SCN1A-222ENST00000642141 GUK1Q16774 197 aa7.22□□□□□ -1.25
SCN1A-222ENST00000642141 LGALS9BQ3B8N2 356 aa7.22□□□□□ -1.25
SCN1A-222ENST00000642141 RNF212Q495C1 297 aa7.22□□□□□ -1.25
SCN1A-222ENST00000642141 Q6ZR54 194 aa7.22□□□□□ -1.25
SCN1A-222ENST00000642141 MIR17HGQ75NE6 70 aa7.22□□□□□ -1.25
SCN1A-222ENST00000642141 CCDC28AQ8IWP9 274 aa7.22□□□□□ -1.25
SCN1A-222ENST00000642141 RNASE8Q8TDE3 154 aaKnown RBP7.22□□□□□ -1.25
SCN1A-222ENST00000642141 CHAC2Q8WUX2 184 aa7.22□□□□□ -1.25
SCN1A-222ENST00000642141 NPCDR1Q9BY65 106 aa7.22□□□□□ -1.25
SCN1A-222ENST00000642141 A0A0J9YY99 117 aa7.21□□□□□ -1.26
SCN1A-222ENST00000642141 A0A1B0GVY2 172 aa7.21□□□□□ -1.26
SCN1A-222ENST00000642141 NPIPB6E9PJ23 425 aa7.21□□□□□ -1.26
SCN1A-222ENST00000642141 RLN2P04090 185 aa7.21□□□□□ -1.26
SCN1A-222ENST00000642141 LEPP41159 167 aa7.21□□□□□ -1.26
SCN1A-222ENST00000642141 CD300CQ08708 224 aa7.21□□□□□ -1.26
SCN1A-222ENST00000642141 ICAM4Q14773 271 aa7.21□□□□□ -1.26
SCN1A-222ENST00000642141 ATP6V1FQ16864 119 aa7.21□□□□□ -1.26
SCN1A-222ENST00000642141 FAM122CQ6P4D5 195 aa7.21□□□□□ -1.26
SCN1A-222ENST00000642141 C15orf53Q8NAA6 179 aa7.21□□□□□ -1.26
SCN1A-222ENST00000642141 TMEM263Q8WUH6 116 aaKnown RBP7.21□□□□□ -1.26
SCN1A-222ENST00000642141 RNF141Q8WVD5 230 aa7.21□□□□□ -1.26
SCN1A-222ENST00000642141 SLC25A2Q9BXI2 301 aa7.21□□□□□ -1.26
SCN1A-222ENST00000642141 PKHD1P08F94 4074 aa7.21□□□□□ -1.26
SCN1A-222ENST00000642141 HERC2O95714 4834 aa7.21□□□□□ -1.26
SCN1A-222ENST00000642141 TRAV26-1A0A087WT03 109 aa7.2□□□□□ -1.26
SCN1A-222ENST00000642141 IGKV2-40A0A087WW87 121 aaPredicted RBP7.2□□□□□ -1.26
SCN1A-222ENST00000642141 E5RGE8 158 aa7.2□□□□□ -1.26
SCN1A-222ENST00000642141 INMT-MINDY4F8WBC2 141 aa7.2□□□□□ -1.26
SCN1A-222ENST00000642141 EIF3GO75821 320 aaKnown RBP eCLIP7.2□□□□□ -1.26
SCN1A-222ENST00000642141 IGKV2D-40P01614 121 aaPredicted RBP7.2□□□□□ -1.26
SCN1A-222ENST00000642141 OR10J4P0C629 311 aa7.2□□□□□ -1.26
SCN1A-222ENST00000642141 HIST1H1EP10412 219 aaKnown RBP7.2□□□□□ -1.26
SCN1A-222ENST00000642141 BTN1A1Q13410 526 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms