RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 HIST1H2BDP58876 126 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 HIST1H2BCP62807 126 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 HIST2H2BEQ16778 126 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.32□□□□□ -2.04
SCN1A-219ENST00000641575 C1orf194Q5T5A4 169 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 NEGR1Q7Z3B1 354 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 HIST1H2BHQ93079 126 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 COQ2Q96H96 371 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 HIST1H2BNQ99877 126 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 HIST1H2BMQ99879 126 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 PLA2G2FQ9BZM2 168 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 PPYP01298 95 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 RNASE4P34096 147 aaKnown RBP2.31□□□□□ -2.04
SCN1A-219ENST00000641575 ZNRF2Q8NHG8 242 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 IGHV3-15A0A0B4J1V0 119 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 FAM236DA0A1B0GTK5 79 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 LYRM9A8MSI8 78 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 NDUFS7O75251 213 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 NHLRC4P0CG21 123 aaPredicted RBP2.31□□□□□ -2.04
SCN1A-219ENST00000641575 FAM236CP0DP71 79 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 LINC00158P58513 81 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 DEFB113Q30KQ7 82 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 C1QL4Q86Z23 238 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 C18orf12Q96KH6 178 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 A0A0B4J2E0 115 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 A0A1B0GX12 115 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 NBR2O15453 112 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 RBM38Q9H0Z9 239 aaKnown RBP2.31□□□□□ -2.04
SCN1A-219ENST00000641575 HCRTO43612 131 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 BUB3O43684 328 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 HIST1H2BLQ99880 126 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 FGF22Q9HCT0 170 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 OTORQ9NRC9 128 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 ST6GALNAC2Q9UJ37 374 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 TRAV8-3A0A0A6YYJ7 113 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 A0A0U1RQV5 110 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 IGHG2P01859 326 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 NGFRP08138 427 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 C3orf36Q3SXR2 165 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 PRSS57Q6UWY2 283 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 BCL6BQ8N143 479 aaPredicted RBP2.31□□□□□ -2.04
SCN1A-219ENST00000641575 FAM110DQ8TAY7 271 aaPredicted RBP2.31□□□□□ -2.04
SCN1A-219ENST00000641575 HERVK_113P63121 156 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 C17orf100A8MU93 164 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 K7ENP7 123 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 MSRB3Q8IXL7 192 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 VOPP1Q96AW1 172 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 TMEM14BQ9NUH8 114 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 A0A0G2JK05 382 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 FAM229AH3BQW9 127 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 LY6G6FQ5SQ64 297 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 C9orf139Q6ZV77 190 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 APCDD1LQ8NCL9 501 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 PDFQ9HBH1 243 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 TEX22C9J3V5 150 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 TAX1BP3O14907 124 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 PAX4O43316 350 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 GNLYP22749 145 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 CDKN1AP38936 164 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 TMEM222Q9H0R3 208 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 ATP5G1P05496 136 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 CD28P10747 220 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 ATP5G3P48201 142 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 HERV-K104P63124 156 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 RHOHQ15669 191 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 HIGD2BQ4VC39 106 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 CIARTQ8N365 385 aaPredicted RBP2.31□□□□□ -2.04
SCN1A-219ENST00000641575 SMIM8Q96KF7 97 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 TMEM242Q9NWH2 141 aa2.31□□□□□ -2.04
SCN1A-219ENST00000641575 C9JAW5 83 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 USP17L23D6RBM5 183 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 IGHG3P01860 377 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 TIRAPP58753 221 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 PFN3P60673 137 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 FGF12P61328 243 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 IFI27L1Q96BM0 104 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 EAF1Q96JC9 268 aaPredicted RBP2.3□□□□□ -2.04
SCN1A-219ENST00000641575 KLK13Q9UKR3 277 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 RFNGQ9Y644 331 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 FAM231BA6NCW3 169 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 SHISA9B4DS77 424 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 M0R381 172 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 NBL1P41271 181 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 CXCL5P42830 114 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 CLEC19AQ6UXS0 136 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 C8orf31Q8N9H6 132 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 ZNF625Q96I27 306 aaPredicted RBP2.3□□□□□ -2.04
SCN1A-219ENST00000641575 IGLV3-22A0A075B6J6 115 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 FOXI3A8MTJ6 420 aaPredicted RBP2.3□□□□□ -2.04
SCN1A-219ENST00000641575 LINC01565O15544 149 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 IGHV3-13P01766 116 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 IGHV3-7P01780 117 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 ICAM4Q14773 271 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 GFI1BQ5VTD9 330 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 LINC00305Q7Z4B0 112 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 RPS27P42677 84 aaKnown RBP2.3□□□□□ -2.04
SCN1A-219ENST00000641575 ATP5EP56381 51 aaPredicted RBP2.3□□□□□ -2.04
SCN1A-219ENST00000641575 CFHR4Q92496 578 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 RASL10AQ92737 203 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 AJUBAQ96IF1 538 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms