RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 NCOA6Q14686 2063 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-216ENST00000637968 EPOPA6NHQ4 379 aa4.59□□□□□ -1.67
SCN1A-216ENST00000637968 LINC00271P0C7V0 271 aa4.59□□□□□ -1.67
SCN1A-216ENST00000637968 ZNF32P17041 273 aa4.59□□□□□ -1.67
SCN1A-216ENST00000637968 PRR7Q8TB68 274 aa4.59□□□□□ -1.67
SCN1A-216ENST00000637968 OTORQ9NRC9 128 aa4.59□□□□□ -1.67
SCN1A-216ENST00000637968 CNOT1A5YKK6 2376 aaKnown RBP4.59□□□□□ -1.68
SCN1A-216ENST00000637968 TRBV7-7A0A0K0K1E9 115 aa4.59□□□□□ -1.68
SCN1A-216ENST00000637968 A0A0U1RRA0 63 aa4.59□□□□□ -1.68
SCN1A-216ENST00000637968 LINC01619G3V211 115 aa4.59□□□□□ -1.68
SCN1A-216ENST00000637968 H3BT86 120 aa4.59□□□□□ -1.68
SCN1A-216ENST00000637968 OVOL1O14753 267 aa4.59□□□□□ -1.68
SCN1A-216ENST00000637968 IGHV4-34P06331 123 aa4.59□□□□□ -1.68
SCN1A-216ENST00000637968 NDUFA11Q86Y39 141 aa4.59□□□□□ -1.68
SCN1A-216ENST00000637968 EP300Q09472 2414 aaPredicted RBP4.59□□□□□ -1.68
SCN1A-216ENST00000637968 CACNA1IQ9P0X4 2223 aa4.59□□□□□ -1.68
SCN1A-216ENST00000637968 MYO7BQ6PIF6 2116 aa4.59□□□□□ -1.68
SCN1A-216ENST00000637968 MED12Q93074 2177 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 FAM240AA0A1B0GVK7 77 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 C15orf65H3BRN8 121 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 MNX1P50219 401 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-216ENST00000637968 CCL8P80075 99 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 GUSBP11Q6P575 273 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 SLC22A18ASQ8N1D0 253 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 FGFBP3Q8TAT2 258 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 PYGO1Q9Y3Y4 419 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 PLXNB2O15031 1838 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 TRBV6-6A0A0A6YYG2 114 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 DEFB108AA8MXU0 73 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 GRPP07492 148 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 CRYGAP11844 174 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 MRPL55Q7Z7F7 128 aaKnown RBP4.58□□□□□ -1.68
SCN1A-216ENST00000637968 KLK15Q9H2R5 256 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 LRRK1Q38SD2 2015 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 SEC16AO15027 2179 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 TRBV7-3A0A075B6L6 115 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 IGHV3-43A0A0B4J1X8 118 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 IGHV3-20A0A0C4DH32 117 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 C5orf63A6NC05 138 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 IGHV3-9P01782 118 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 CRYGDP07320 174 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 PRSS2P07478 247 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 IGHV3-43DP0DP04 118 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 UBE2D3P61077 147 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 UBE2D2P62837 147 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 LAGE3Q14657 143 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 SPRNQ5BIV9 151 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 LINC00305Q7Z4B0 112 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 PATE1Q8WXA2 126 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 TMEM74BQ9NUR3 256 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 A0A0B4J2C4 111 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 TRGV8A0A0C4DH27 118 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 F8VRH5 84 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 MRPS12O15235 138 aaKnown RBP4.58□□□□□ -1.68
SCN1A-216ENST00000637968 SLC25A16P16260 332 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 C3orf36Q3SXR2 165 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 ZNF441Q8N8Z8 693 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 Q9H3A6 140 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 GVINP1Q7Z2Y8 2422 aa4.58□□□□□ -1.68
SCN1A-216ENST00000637968 IGHV1OR21-1A0A087WYE8 117 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 PRR20EP86478 221 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 PRR20CP86479 221 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 PRR20DP86480 221 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 PRR20BP86481 221 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 PRR20AP86496 221 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 LOXL1Q08397 574 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-216ENST00000637968 RSPO4Q2I0M5 234 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-216ENST00000637968 MRPL51Q4U2R6 128 aaKnown RBP4.57□□□□□ -1.68
SCN1A-216ENST00000637968 C6orf226Q5I0X4 101 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 CCL4L1Q8NHW4 92 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 ODF3Q96PU9 254 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 EXPH5Q8NEV8 1989 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 SMKR1H3BMG3 65 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 J3QQQ9 107 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 DNAL4O96015 105 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 TCRAP04437 139 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 FAM27BQ5VT28 67 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 MAPKAPK5-AS1Q8N8E1 139 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 RFESDQ8TAC1 157 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 AGPAT4-IT1Q9H0P7 198 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 AHCTF1Q8WYP5 2266 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 ESPL1Q14674 2120 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 TRAV8-3A0A0A6YYJ7 113 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 CD40P25942 277 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 GFERP55789 205 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 LOXL3P58215 753 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 LYZL1Q6UWQ5 148 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 GFRALQ6UXV0 394 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 PRDM14Q9GZV8 571 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 SERP2Q8N6R1 65 aa4.57□□□□□ -1.68
SCN1A-216ENST00000637968 PCNX3Q9H6A9 2034 aa4.56□□□□□ -1.68
SCN1A-216ENST00000637968 RBMY1BA6NDE4 496 aaKnown RBP4.56□□□□□ -1.68
SCN1A-216ENST00000637968 RBMY1EA6NEQ0 496 aaKnown RBP4.56□□□□□ -1.68
SCN1A-216ENST00000637968 ZNF785A8K8V0 405 aa4.56□□□□□ -1.68
SCN1A-216ENST00000637968 J3QT63 122 aa4.56□□□□□ -1.68
SCN1A-216ENST00000637968 RBMY1DP0C7P1 496 aaKnown RBP4.56□□□□□ -1.68
SCN1A-216ENST00000637968 RBMY1A1P0DJD3 496 aaKnown RBP4.56□□□□□ -1.68
SCN1A-216ENST00000637968 RBMY1CP0DJD4 496 aa4.56□□□□□ -1.68
SCN1A-216ENST00000637968 INAFM2P0DMQ5 153 aa4.56□□□□□ -1.68
SCN1A-216ENST00000637968 RBMY1FQ15415 496 aaKnown RBP4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 396.1 ms