RNA–Protein interactions for RNA: ENST00000636876.1

CLN6-216, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 655 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-216ENST00000636876 HLA-DRB4P13762 266 aa11.8□□□□□ -0.52
CLN6-216ENST00000636876 RANP62826 216 aaKnown RBP11.8□□□□□ -0.52
CLN6-216ENST00000636876 ICAM4Q14773 271 aa11.8□□□□□ -0.52
CLN6-216ENST00000636876 FAM74A1Q5RGS3 127 aa11.8□□□□□ -0.52
CLN6-216ENST00000636876 GDF5OSQ5U4N7 250 aa11.8□□□□□ -0.52
CLN6-216ENST00000636876 EBLN2Q6P2I7 272 aa11.8□□□□□ -0.52
CLN6-216ENST00000636876 TRPT1Q86TN4 253 aaKnown RBP11.8□□□□□ -0.52
CLN6-216ENST00000636876 IQCF2Q8IXL9 164 aa11.8□□□□□ -0.52
CLN6-216ENST00000636876 SFT2D1Q8WV19 159 aa11.8□□□□□ -0.52
CLN6-216ENST00000636876 RPUSD4Q96CM3 377 aaKnown RBP11.8□□□□□ -0.52
CLN6-216ENST00000636876 HLA-DRB4X5D2U9 266 aa11.8□□□□□ -0.52
CLN6-216ENST00000636876 ZNF705FA8MVS1 300 aaPredicted RBP11.79□□□□□ -0.52
CLN6-216ENST00000636876 M0R3E3 92 aa11.79□□□□□ -0.52
CLN6-216ENST00000636876 H2AFB1P0C5Y9 115 aa11.79□□□□□ -0.52
CLN6-216ENST00000636876 RPL35AP18077 110 aaKnown RBP11.79□□□□□ -0.52
CLN6-216ENST00000636876 Q9H3A6 140 aa11.79□□□□□ -0.52
CLN6-216ENST00000636876 TMPRSS5Q9H3S3 457 aa11.79□□□□□ -0.52
CLN6-216ENST00000636876 OTORQ9NRC9 128 aa11.79□□□□□ -0.52
CLN6-216ENST00000636876 PRAC2D3DTV9 90 aa11.78□□□□□ -0.52
CLN6-216ENST00000636876 OR8A1Q8NGG7 326 aa11.78□□□□□ -0.52
CLN6-216ENST00000636876 B9D2Q9BPU9 175 aa11.78□□□□□ -0.52
CLN6-216ENST00000636876 A8MTW9 85 aa11.77□□□□□ -0.53
CLN6-216ENST00000636876 DUSP14O95147 198 aaKnown RBP11.77□□□□□ -0.53
CLN6-216ENST00000636876 ZNF705DP0CH99 300 aaPredicted RBP11.77□□□□□ -0.53
CLN6-216ENST00000636876 ZNF705BP0CI00 300 aaPredicted RBP11.77□□□□□ -0.53
CLN6-216ENST00000636876 PRB4P10163 310 aaPredicted RBP11.77□□□□□ -0.53
CLN6-216ENST00000636876 HAGHQ16775 308 aa11.77□□□□□ -0.53
CLN6-216ENST00000636876 CLUHP3Q96NS8 147 aa11.77□□□□□ -0.53
CLN6-216ENST00000636876 DNAH9Q9NYC9 4486 aa11.77□□□□□ -0.53
CLN6-216ENST00000636876 COL7A1Q02388 2944 aa11.76□□□□□ -0.53
CLN6-216ENST00000636876 TRAV1-1A0A0B4J248 108 aa11.76□□□□□ -0.53
CLN6-216ENST00000636876 KIR2DL5BA0A0G2JN68 375 aa11.76□□□□□ -0.53
CLN6-216ENST00000636876 KIR2DL5BA0A0G2JPC4 375 aa11.76□□□□□ -0.53
CLN6-216ENST00000636876 A0A1B0GV50 99 aa11.76□□□□□ -0.53
CLN6-216ENST00000636876 PGPA6NDG6 321 aa11.76□□□□□ -0.53
CLN6-216ENST00000636876 ZNF705EA8MWA4 302 aaPredicted RBP11.76□□□□□ -0.53
CLN6-216ENST00000636876 CNN1P51911 297 aaKnown RBP11.76□□□□□ -0.53
CLN6-216ENST00000636876 APOC4P55056 127 aa11.76□□□□□ -0.53
CLN6-216ENST00000636876 HIST1H1AQ02539 215 aaPredicted RBP11.76□□□□□ -0.53
CLN6-216ENST00000636876 KIR2DL5AQ8N109 375 aa11.76□□□□□ -0.53
CLN6-216ENST00000636876 KIR2DL5BQ8NHK3 375 aa11.76□□□□□ -0.53
CLN6-216ENST00000636876 A0A1W2PRE2 83 aa11.75□□□□□ -0.53
CLN6-216ENST00000636876 IGKV3-20P01619 116 aa11.75□□□□□ -0.53
CLN6-216ENST00000636876 HBE1P02100 147 aa11.75□□□□□ -0.53
CLN6-216ENST00000636876 CSN1S1P47710 185 aa11.75□□□□□ -0.53
CLN6-216ENST00000636876 UBE2G2P60604 165 aa11.75□□□□□ -0.53
CLN6-216ENST00000636876 MORN3Q6PF18 240 aaPredicted RBP11.75□□□□□ -0.53
CLN6-216ENST00000636876 SBSPONQ8IVN8 264 aa11.75□□□□□ -0.53
CLN6-216ENST00000636876 OR4B1Q8NGF8 309 aa11.75□□□□□ -0.53
CLN6-216ENST00000636876 OR10J6PQ8NGY7 276 aa11.75□□□□□ -0.53
CLN6-216ENST00000636876 ASCL2Q99929 193 aa11.75□□□□□ -0.53
CLN6-216ENST00000636876 CSTL1Q9H114 145 aa11.75□□□□□ -0.53
CLN6-216ENST00000636876 YTHDF2Q9Y5A9 579 aaKnown RBP11.75□□□□□ -0.53
CLN6-216ENST00000636876 GGTLC3B5MD39 225 aa11.74□□□□□ -0.53
CLN6-216ENST00000636876 TEX46H3BTG2 121 aa11.74□□□□□ -0.53
CLN6-216ENST00000636876 TEX261Q6UWH6 196 aa11.74□□□□□ -0.53
CLN6-216ENST00000636876 ARL6IP6Q8N6S5 226 aa11.74□□□□□ -0.53
CLN6-216ENST00000636876 CMTM2Q8TAZ6 248 aa11.74□□□□□ -0.53
CLN6-216ENST00000636876 RXFP4Q8TDU9 374 aa11.74□□□□□ -0.53
CLN6-216ENST00000636876 IGKV2-40A0A087WW87 121 aaPredicted RBP11.73□□□□□ -0.53
CLN6-216ENST00000636876 FAM74A7A6NL05 159 aa11.73□□□□□ -0.53
CLN6-216ENST00000636876 NPIPB6E9PJ23 425 aa11.73□□□□□ -0.53
CLN6-216ENST00000636876 UBE2CO00762 179 aa11.73□□□□□ -0.53
CLN6-216ENST00000636876 IGKV2D-40P01614 121 aaPredicted RBP11.73□□□□□ -0.53
CLN6-216ENST00000636876 SLC25A5P05141 298 aaKnown RBP11.73□□□□□ -0.53
CLN6-216ENST00000636876 SUMO1P63165 101 aaKnown RBP11.73□□□□□ -0.53
CLN6-216ENST00000636876 BLOC1S1P78537 153 aa11.73□□□□□ -0.53
CLN6-216ENST00000636876 CCL20P78556 96 aa11.73□□□□□ -0.53
CLN6-216ENST00000636876 AMTNQ6UX39 209 aa11.73□□□□□ -0.53
CLN6-216ENST00000636876 C5orf17Q8NAS9 161 aa11.73□□□□□ -0.53
CLN6-216ENST00000636876 ARL2-SNX15V9GYD0 113 aa11.73□□□□□ -0.53
CLN6-216ENST00000636876 DIRC3C9JPN6 131 aa11.72□□□□□ -0.53
CLN6-216ENST00000636876 CA1P00915 261 aaPredicted RBP11.72□□□□□ -0.53
CLN6-216ENST00000636876 GIG44P09565 113 aaPredicted RBP11.72□□□□□ -0.53
CLN6-216ENST00000636876 PPT1P50897 306 aa11.72□□□□□ -0.53
CLN6-216ENST00000636876 NUTF2P61970 127 aaKnown RBP11.72□□□□□ -0.53
CLN6-216ENST00000636876 ZNF680Q8NEM1 530 aa11.72□□□□□ -0.53
CLN6-216ENST00000636876 NKX6-2Q9C056 277 aaPredicted RBP11.72□□□□□ -0.53
CLN6-216ENST00000636876 TENM3Q9P273 2699 aa11.72□□□□□ -0.53
CLN6-216ENST00000636876 RBAKDNA6NC62 111 aa11.71□□□□□ -0.53
CLN6-216ENST00000636876 PAGE4O60829 102 aa11.71□□□□□ -0.53
CLN6-216ENST00000636876 IFNA7P01567 189 aa11.71□□□□□ -0.53
CLN6-216ENST00000636876 GNG5P63218 68 aa11.71□□□□□ -0.53
CLN6-216ENST00000636876 ERCC8Q13216 396 aa11.71□□□□□ -0.53
CLN6-216ENST00000636876 C9orf47Q6ZRZ4 202 aa11.71□□□□□ -0.53
CLN6-216ENST00000636876 TM2D3Q9BRN9 247 aa11.71□□□□□ -0.53
CLN6-216ENST00000636876 SLC35B3Q9H1N7 401 aa11.71□□□□□ -0.53
CLN6-216ENST00000636876 RPH3ALQ9UNE2 315 aa11.71□□□□□ -0.53
CLN6-216ENST00000636876 FXYD7P58549 80 aa11.7□□□□□ -0.54
CLN6-216ENST00000636876 CST9LP1Q5W188 147 aa11.7□□□□□ -0.54
CLN6-216ENST00000636876 GOLT1AQ6ZVE7 132 aa11.7□□□□□ -0.54
CLN6-216ENST00000636876 Q6ZWC4 215 aa11.7□□□□□ -0.54
CLN6-216ENST00000636876 LINC00477Q96M19 166 aa11.7□□□□□ -0.54
CLN6-216ENST00000636876 VGLL1Q99990 258 aa11.7□□□□□ -0.54
CLN6-216ENST00000636876 AGPAT4-IT1Q9H0P7 198 aa11.7□□□□□ -0.54
CLN6-216ENST00000636876 MANBALQ9NQG1 85 aa11.7□□□□□ -0.54
CLN6-216ENST00000636876 PPP1R14DQ9NXH3 145 aa11.7□□□□□ -0.54
CLN6-216ENST00000636876 GNG13Q9P2W3 67 aa11.7□□□□□ -0.54
CLN6-216ENST00000636876 EPDR1Q9UM22 224 aa11.7□□□□□ -0.54
CLN6-216ENST00000636876 AMBPP02760 352 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms