RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 CLEC19AQ6UXS0 136 aa10.91□□□□□ -0.66
CLN3-242ENST00000635958 OR1L4Q8NGR5 311 aa10.91□□□□□ -0.66
CLN3-242ENST00000635958 WFDC12Q8WWY7 111 aa10.91□□□□□ -0.66
CLN3-242ENST00000635958 VAMP8Q9BV40 100 aa10.91□□□□□ -0.66
CLN3-242ENST00000635958 TOMM40O96008 361 aa10.91□□□□□ -0.66
CLN3-242ENST00000635958 SNRPCP09234 159 aaKnown RBP10.91□□□□□ -0.66
CLN3-242ENST00000635958 CBLN1P23435 193 aa10.91□□□□□ -0.66
CLN3-242ENST00000635958 GATA2P23769 480 aaPredicted RBP10.91□□□□□ -0.66
CLN3-242ENST00000635958 PROK1P58294 105 aa10.91□□□□□ -0.66
CLN3-242ENST00000635958 PLP1P60201 277 aa10.91□□□□□ -0.66
CLN3-242ENST00000635958 CENPWQ5EE01 88 aa10.91□□□□□ -0.66
CLN3-242ENST00000635958 TCTEX1D4Q5JR98 221 aa10.91□□□□□ -0.66
CLN3-242ENST00000635958 FAM231DQ6ZW35 169 aa10.91□□□□□ -0.66
CLN3-242ENST00000635958 MIR17HGQ75NE6 70 aa10.91□□□□□ -0.66
CLN3-242ENST00000635958 SMIM12Q96EX1 92 aa10.91□□□□□ -0.66
CLN3-242ENST00000635958 A0A1B0GUS0 222 aa10.9□□□□□ -0.66
CLN3-242ENST00000635958 SMIM27A0A1W2PRY6 76 aa10.9□□□□□ -0.66
CLN3-242ENST00000635958 IZUMO1RA6ND01 250 aa10.9□□□□□ -0.66
CLN3-242ENST00000635958 SERF1AO75920 110 aa10.9□□□□□ -0.66
CLN3-242ENST00000635958 GPX1P07203 203 aa10.9□□□□□ -0.66
CLN3-242ENST00000635958 PSG1P11464 419 aa10.9□□□□□ -0.66
CLN3-242ENST00000635958 GPR183P32249 361 aa10.9□□□□□ -0.66
CLN3-242ENST00000635958 SRSF2Q01130 221 aaKnown RBP10.9□□□□□ -0.66
CLN3-242ENST00000635958 GAGE1Q13065 139 aa10.9□□□□□ -0.66
CLN3-242ENST00000635958 SPATA31B1PQ5VZV4 182 aa10.9□□□□□ -0.66
CLN3-242ENST00000635958 TOMM20LQ6UXN7 152 aa10.9□□□□□ -0.66
CLN3-242ENST00000635958 OR4X2Q8NGF9 303 aa10.9□□□□□ -0.66
CLN3-242ENST00000635958 ZNF414Q96IQ9 312 aa10.9□□□□□ -0.66
CLN3-242ENST00000635958 MRPL27Q9P0M9 148 aaKnown RBP10.9□□□□□ -0.66
CLN3-242ENST00000635958 RNF114Q9Y508 228 aa10.9□□□□□ -0.66
CLN3-242ENST00000635958 SLC17A3O00476 420 aa10.89□□□□□ -0.67
CLN3-242ENST00000635958 NUPR1O60356 82 aa10.89□□□□□ -0.67
CLN3-242ENST00000635958 CRYBB3P26998 211 aa10.89□□□□□ -0.67
CLN3-242ENST00000635958 Q6ZWC4 215 aa10.89□□□□□ -0.67
CLN3-242ENST00000635958 NAT8BQ9UHF3 227 aa10.89□□□□□ -0.67
CLN3-242ENST00000635958 TP53TG3Q9ULZ0 132 aa10.89□□□□□ -0.67
CLN3-242ENST00000635958 EREGO14944 169 aa10.88□□□□□ -0.67
CLN3-242ENST00000635958 IGHV3-11P01762 117 aa10.88□□□□□ -0.67
CLN3-242ENST00000635958 ZNF705AQ6ZN79 300 aaPredicted RBP10.88□□□□□ -0.67
CLN3-242ENST00000635958 TMEM136Q6ZRR5 245 aa10.88□□□□□ -0.67
CLN3-242ENST00000635958 OR8I2Q8N0Y5 310 aa10.88□□□□□ -0.67
CLN3-242ENST00000635958 STXBP6Q8NFX7 210 aa10.88□□□□□ -0.67
CLN3-242ENST00000635958 DNAJC4Q9NNZ3 241 aa10.88□□□□□ -0.67
CLN3-242ENST00000635958 ZNF331Q9NQX6 463 aaPredicted RBP10.88□□□□□ -0.67
CLN3-242ENST00000635958 WI2-2373I1.2A0A1W2PRP0 233 aa10.88□□□□□ -0.67
CLN3-242ENST00000635958 OR7C2O60412 319 aa10.88□□□□□ -0.67
CLN3-242ENST00000635958 IBA57Q5T440 356 aaKnown RBP10.88□□□□□ -0.67
CLN3-242ENST00000635958 KCNS1Q96KK3 526 aa10.88□□□□□ -0.67
CLN3-242ENST00000635958 GNB4Q9HAV0 340 aa10.88□□□□□ -0.67
CLN3-242ENST00000635958 PEF1Q9UBV8 284 aaKnown RBP10.88□□□□□ -0.67
CLN3-242ENST00000635958 GRIFINA4D1Z8 144 aa10.87□□□□□ -0.67
CLN3-242ENST00000635958 ZNF253O75346 499 aa10.87□□□□□ -0.67
CLN3-242ENST00000635958 TRBV12-3P01733 135 aa10.87□□□□□ -0.67
CLN3-242ENST00000635958 LGALS1P09382 135 aaKnown RBP10.87□□□□□ -0.67
CLN3-242ENST00000635958 ARL3P36405 182 aa10.87□□□□□ -0.67
CLN3-242ENST00000635958 PATE2Q6UY27 113 aa10.87□□□□□ -0.67
CLN3-242ENST00000635958 C20orf202A1L168 122 aa10.86□□□□□ -0.67
CLN3-242ENST00000635958 BMPR1BO00238 502 aa10.86□□□□□ -0.67
CLN3-242ENST00000635958 LINC00310P59036 64 aa10.86□□□□□ -0.67
CLN3-242ENST00000635958 RELQ04864 619 aaPredicted RBP10.86□□□□□ -0.67
CLN3-242ENST00000635958 GRAMD2BQ96HH9 432 aa10.86□□□□□ -0.67
CLN3-242ENST00000635958 IGF2BP2-AS1Q96M15 143 aa10.86□□□□□ -0.67
CLN3-242ENST00000635958 PPP1R14DQ9NXH3 145 aa10.86□□□□□ -0.67
CLN3-242ENST00000635958 DNHD1Q96M86 4753 aa10.86□□□□□ -0.67
CLN3-242ENST00000635958 HYPMO75409 117 aa10.86□□□□□ -0.67
CLN3-242ENST00000635958 SUMO1P63165 101 aaKnown RBP10.86□□□□□ -0.67
CLN3-242ENST00000635958 PMCHL1Q16048 86 aa10.86□□□□□ -0.67
CLN3-242ENST00000635958 ATP5L2Q7Z4Y8 100 aa10.86□□□□□ -0.67
CLN3-242ENST00000635958 PRIMA1Q86XR5 153 aa10.86□□□□□ -0.67
CLN3-242ENST00000635958 RNF125Q96EQ8 232 aa10.86□□□□□ -0.67
CLN3-242ENST00000635958 ATRQ13535 2644 aa10.86□□□□□ -0.67
CLN3-242ENST00000635958 APCSP02743 223 aa10.85□□□□□ -0.67
CLN3-242ENST00000635958 CD28P10747 220 aa10.85□□□□□ -0.67
CLN3-242ENST00000635958 ORM2P19652 201 aa10.85□□□□□ -0.67
CLN3-242ENST00000635958 DMRTA1Q5VZB9 504 aa10.85□□□□□ -0.67
CLN3-242ENST00000635958 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.85□□□□□ -0.67
CLN3-242ENST00000635958 C4orf3Q8WVX3 66 aa10.85□□□□□ -0.67
CLN3-242ENST00000635958 ZNF503Q96F45 646 aa10.85□□□□□ -0.67
CLN3-242ENST00000635958 ZFAND3Q9H8U3 227 aa10.85□□□□□ -0.67
CLN3-242ENST00000635958 DIRC3C9JPN6 131 aa10.84□□□□□ -0.67
CLN3-242ENST00000635958 HAX1O00165 279 aa10.84□□□□□ -0.67
CLN3-242ENST00000635958 NDUFA4O00483 81 aa10.84□□□□□ -0.67
CLN3-242ENST00000635958 COX7A2P2O60397 106 aa10.84□□□□□ -0.67
CLN3-242ENST00000635958 ZNF324O75467 553 aaPredicted RBP10.84□□□□□ -0.67
CLN3-242ENST00000635958 IGLV2-8P01709 118 aa10.84□□□□□ -0.67
CLN3-242ENST00000635958 IL4P05112 153 aa10.84□□□□□ -0.67
CLN3-242ENST00000635958 LINC00614P0C842 121 aa10.84□□□□□ -0.67
CLN3-242ENST00000635958 OR5I1Q13606 314 aa10.84□□□□□ -0.67
CLN3-242ENST00000635958 C10orf113Q5VZT2 155 aa10.84□□□□□ -0.67
CLN3-242ENST00000635958 BORCS7Q96B45 105 aa10.84□□□□□ -0.67
CLN3-242ENST00000635958 NRN1Q9NPD7 142 aa10.84□□□□□ -0.67
CLN3-242ENST00000635958 GGTLC3B5MD39 225 aa10.84□□□□□ -0.67
CLN3-242ENST00000635958 HIST1H1EP10412 219 aaKnown RBP10.84□□□□□ -0.67
CLN3-242ENST00000635958 AMTP48728 403 aa10.84□□□□□ -0.67
CLN3-242ENST00000635958 LYZP61626 148 aa10.84□□□□□ -0.67
CLN3-242ENST00000635958 KLF5Q13887 457 aaPredicted RBP10.84□□□□□ -0.67
CLN3-242ENST00000635958 COL5A1-AS1Q5SY13 56 aa10.84□□□□□ -0.67
CLN3-242ENST00000635958 GPHB5Q86YW7 130 aa10.84□□□□□ -0.67
CLN3-242ENST00000635958 OR1B1Q8NGR6 318 aa10.84□□□□□ -0.67
CLN3-242ENST00000635958 UQCR10Q9UDW1 63 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms