RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 C1QTNF4Q9BXJ3 329 aa14.82□□□□□ -0.04
PTCD3-220ENST00000627371 PRELID1Q9Y255 219 aa14.82□□□□□ -0.04
PTCD3-220ENST00000627371 PFDN1O60925 122 aa14.81□□□□□ -0.04
PTCD3-220ENST00000627371 ZNF705DP0CH99 300 aaPredicted RBP14.81□□□□□ -0.04
PTCD3-220ENST00000627371 ZNF705BP0CI00 300 aaPredicted RBP14.81□□□□□ -0.04
PTCD3-220ENST00000627371 STAG3L2P0CL84 134 aa14.81□□□□□ -0.04
PTCD3-220ENST00000627371 STAG3L3P0CL85 134 aa14.81□□□□□ -0.04
PTCD3-220ENST00000627371 HIST1H1AQ02539 215 aaPredicted RBP14.81□□□□□ -0.04
PTCD3-220ENST00000627371 AMTNQ6UX39 209 aa14.81□□□□□ -0.04
PTCD3-220ENST00000627371 RAB24Q969Q5 203 aa14.81□□□□□ -0.04
PTCD3-220ENST00000627371 PHYHIPLQ96FC7 376 aa14.81□□□□□ -0.04
PTCD3-220ENST00000627371 WWC2-AS2Q96NR7 200 aa14.81□□□□□ -0.04
PTCD3-220ENST00000627371 AAMDCQ9H7C9 122 aa14.81□□□□□ -0.04
PTCD3-220ENST00000627371 DNAH7Q8WXX0 4024 aa14.8□□□□□ -0.04
PTCD3-220ENST00000627371 HMGB3O15347 200 aaKnown RBP14.8□□□□□ -0.04
PTCD3-220ENST00000627371 CD300CQ08708 224 aa14.8□□□□□ -0.04
PTCD3-220ENST00000627371 LGALSLQ3ZCW2 172 aaPredicted RBP14.8□□□□□ -0.04
PTCD3-220ENST00000627371 AKR1C8PQ5T2L2 129 aa14.8□□□□□ -0.04
PTCD3-220ENST00000627371 EXOC3-AS1Q8N2X6 119 aa14.8□□□□□ -0.04
PTCD3-220ENST00000627371 CSNK1G2-AS1Q8NCQ2 148 aa14.8□□□□□ -0.04
PTCD3-220ENST00000627371 ACTR3CQ9C0K3 210 aaPredicted RBP14.8□□□□□ -0.04
PTCD3-220ENST00000627371 SLC35B3Q9H1N7 401 aa14.8□□□□□ -0.04
PTCD3-220ENST00000627371 EDA2RQ9HAV5 297 aa14.8□□□□□ -0.04
PTCD3-220ENST00000627371 XCL2Q9UBD3 114 aa14.8□□□□□ -0.04
PTCD3-220ENST00000627371 PRAC2D3DTV9 90 aa14.79□□□□□ -0.04
PTCD3-220ENST00000627371 M0R3E3 92 aa14.79□□□□□ -0.04
PTCD3-220ENST00000627371 ARL14EPLP0DKL9 152 aa14.79□□□□□ -0.04
PTCD3-220ENST00000627371 PRB4P10163 310 aaPredicted RBP14.79□□□□□ -0.04
PTCD3-220ENST00000627371 FXYD7P58549 80 aa14.79□□□□□ -0.04
PTCD3-220ENST00000627371 EIF5AP63241 154 aaKnown RBP14.79□□□□□ -0.04
PTCD3-220ENST00000627371 LYPD1Q8N2G4 141 aa14.79□□□□□ -0.04
PTCD3-220ENST00000627371 ICAM4Q14773 271 aa14.78□□□□□ -0.04
PTCD3-220ENST00000627371 OR10J6PQ8NGY7 276 aa14.78□□□□□ -0.04
PTCD3-220ENST00000627371 OR11H2Q8NH07 326 aa14.78□□□□□ -0.04
PTCD3-220ENST00000627371 RARRES2Q99969 163 aa14.78□□□□□ -0.04
PTCD3-220ENST00000627371 SEC11BP0C7V7 166 aa14.77□□□□□ -0.05
PTCD3-220ENST00000627371 SSX7Q7RTT5 188 aa14.77□□□□□ -0.05
PTCD3-220ENST00000627371 STOML3Q8TAV4 291 aa14.77□□□□□ -0.05
PTCD3-220ENST00000627371 Q9H3A6 140 aa14.77□□□□□ -0.05
PTCD3-220ENST00000627371 CTXND1A0A1B0GTU2 59 aa14.76□□□□□ -0.05
PTCD3-220ENST00000627371 TPT1P13693 172 aaKnown RBP14.76□□□□□ -0.05
PTCD3-220ENST00000627371 RANP62826 216 aaKnown RBP14.76□□□□□ -0.05
PTCD3-220ENST00000627371 ZNF726P1Q15940 193 aa14.76□□□□□ -0.05
PTCD3-220ENST00000627371 ZFP69Q49AA0 526 aa14.76□□□□□ -0.05
PTCD3-220ENST00000627371 BAP18Q8IXM2 172 aa14.76□□□□□ -0.05
PTCD3-220ENST00000627371 ZNF705EA8MWA4 302 aaPredicted RBP14.75□□□□□ -0.05
PTCD3-220ENST00000627371 BOLA2-SMG1P6H3BVE0 249 aa14.75□□□□□ -0.05
PTCD3-220ENST00000627371 CXorf1O96002 111 aa14.75□□□□□ -0.05
PTCD3-220ENST00000627371 AMBPP02760 352 aa14.75□□□□□ -0.05
PTCD3-220ENST00000627371 GCHFRP30047 84 aa14.75□□□□□ -0.05
PTCD3-220ENST00000627371 SPINK13Q1W4C9 94 aa14.75□□□□□ -0.05
PTCD3-220ENST00000627371 SUN5Q8TC36 379 aa14.75□□□□□ -0.05
PTCD3-220ENST00000627371 NPIPB6E9PJ23 425 aa14.74□□□□□ -0.05
PTCD3-220ENST00000627371 PPP1R14DQ9NXH3 145 aa14.74□□□□□ -0.05
PTCD3-220ENST00000627371 UMAD1C9J7I0 102 aa14.73□□□□□ -0.05
PTCD3-220ENST00000627371 M0R2Z0 102 aa14.73□□□□□ -0.05
PTCD3-220ENST00000627371 ZNF705AQ6ZN79 300 aaPredicted RBP14.73□□□□□ -0.05
PTCD3-220ENST00000627371 C9orf62Q8N4C0 152 aa14.73□□□□□ -0.05
PTCD3-220ENST00000627371 IGF2BP2-AS1Q96M15 143 aa14.73□□□□□ -0.05
PTCD3-220ENST00000627371 OTORQ9NRC9 128 aa14.73□□□□□ -0.05
PTCD3-220ENST00000627371 TMEM167BQ9NRX6 74 aa14.73□□□□□ -0.05
PTCD3-220ENST00000627371 PLA2G2EQ9NZK7 142 aa14.73□□□□□ -0.05
PTCD3-220ENST00000627371 X6R8D5 127 aa14.73□□□□□ -0.05
PTCD3-220ENST00000627371 A0A0J9YWU9 116 aa14.72□□□□□ -0.05
PTCD3-220ENST00000627371 CRXO43186 299 aaPredicted RBP14.72□□□□□ -0.05
PTCD3-220ENST00000627371 CSN1S1P47710 185 aa14.72□□□□□ -0.05
PTCD3-220ENST00000627371 FAM74A1Q5RGS3 127 aa14.72□□□□□ -0.05
PTCD3-220ENST00000627371 ODF3Q96PU9 254 aa14.72□□□□□ -0.05
PTCD3-220ENST00000627371 IGKV2-40A0A087WW87 121 aaPredicted RBP14.71□□□□□ -0.05
PTCD3-220ENST00000627371 INSP01308 110 aa14.71□□□□□ -0.05
PTCD3-220ENST00000627371 IGKV2D-40P01614 121 aaPredicted RBP14.71□□□□□ -0.05
PTCD3-220ENST00000627371 MIFP14174 115 aa14.71□□□□□ -0.05
PTCD3-220ENST00000627371 CDKN1BP46527 198 aa14.71□□□□□ -0.05
PTCD3-220ENST00000627371 RXFP4Q8TDU9 374 aa14.71□□□□□ -0.05
PTCD3-220ENST00000627371 TMED6Q8WW62 240 aa14.71□□□□□ -0.05
PTCD3-220ENST00000627371 C11orf68Q9H3H3 251 aaKnown RBP14.71□□□□□ -0.05
PTCD3-220ENST00000627371 GOLT1BQ9Y3E0 138 aa14.71□□□□□ -0.05
PTCD3-220ENST00000627371 MAP1LC3B2A6NCE7 125 aa14.7□□□□□ -0.06
PTCD3-220ENST00000627371 PGPA6NDG6 321 aa14.7□□□□□ -0.06
PTCD3-220ENST00000627371 CT45A10P0DMU9 189 aa14.7□□□□□ -0.06
PTCD3-220ENST00000627371 FHITP49789 147 aa14.7□□□□□ -0.06
PTCD3-220ENST00000627371 ERCC8Q13216 396 aa14.7□□□□□ -0.06
PTCD3-220ENST00000627371 DPPA3Q6W0C5 159 aa14.7□□□□□ -0.06
PTCD3-220ENST00000627371 C9orf47Q6ZRZ4 202 aa14.7□□□□□ -0.06
PTCD3-220ENST00000627371 SLC51BQ86UW2 128 aa14.7□□□□□ -0.06
PTCD3-220ENST00000627371 IQCF2Q8IXL9 164 aa14.7□□□□□ -0.06
PTCD3-220ENST00000627371 C1orf158Q8N1D5 194 aa14.7□□□□□ -0.06
PTCD3-220ENST00000627371 Q8NAQ8 132 aa14.7□□□□□ -0.06
PTCD3-220ENST00000627371 LINC00477Q96M19 166 aa14.7□□□□□ -0.06
PTCD3-220ENST00000627371 NEU1Q99519 415 aa14.7□□□□□ -0.06
PTCD3-220ENST00000627371 MAP1LC3BQ9GZQ8 125 aa14.7□□□□□ -0.06
PTCD3-220ENST00000627371 TRAV12-2A0A075B6T6 113 aa14.69□□□□□ -0.06
PTCD3-220ENST00000627371 RBAKDNA6NC62 111 aa14.69□□□□□ -0.06
PTCD3-220ENST00000627371 TSPOP30536 169 aa14.69□□□□□ -0.06
PTCD3-220ENST00000627371 FGF8P55075 233 aaPredicted RBP14.69□□□□□ -0.06
PTCD3-220ENST00000627371 EIF5AL1Q6IS14 154 aaKnown RBP14.69□□□□□ -0.06
PTCD3-220ENST00000627371 ARL6IP6Q8N6S5 226 aa14.69□□□□□ -0.06
PTCD3-220ENST00000627371 CMTM2Q8TAZ6 248 aa14.69□□□□□ -0.06
PTCD3-220ENST00000627371 AGPAT4-IT1Q9H0P7 198 aa14.69□□□□□ -0.06
PTCD3-220ENST00000627371 IGHV3OR16-12A0A075B7B8 117 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms