RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 IGKV2-40A0A087WW87 121 aaPredicted RBP16.95■□□□□ 0.3
PNKP-220ENST00000627232 RBAKDNA6NC62 111 aa16.95■□□□□ 0.3
PNKP-220ENST00000627232 IGKV2D-40P01614 121 aaPredicted RBP16.95■□□□□ 0.3
PNKP-220ENST00000627232 CT45A10P0DMU9 189 aa16.95■□□□□ 0.3
PNKP-220ENST00000627232 PYY3Q5JQD4 70 aa16.95■□□□□ 0.3
PNKP-220ENST00000627232 DNLZQ5SXM8 178 aa16.95■□□□□ 0.3
PNKP-220ENST00000627232 LCN12Q6JVE5 192 aa16.95■□□□□ 0.3
PNKP-220ENST00000627232 Q71RC1 249 aaPredicted RBP16.95■□□□□ 0.3
PNKP-220ENST00000627232 TCF24Q7RTU0 167 aa16.95■□□□□ 0.3
PNKP-220ENST00000627232 OR4X2Q8NGF9 303 aa16.95■□□□□ 0.3
PNKP-220ENST00000627232 MRPL53Q96EL3 112 aaKnown RBP16.95■□□□□ 0.3
PNKP-220ENST00000627232 PRDM13Q9H4Q3 707 aa16.95■□□□□ 0.3
PNKP-220ENST00000627232 NIT2Q9NQR4 276 aa16.95■□□□□ 0.3
PNKP-220ENST00000627232 J3QKU1 62 aa16.94■□□□□ 0.3
PNKP-220ENST00000627232 ZNF207O43670 478 aaKnown RBP16.94■□□□□ 0.3
PNKP-220ENST00000627232 TRBV12-3P01733 135 aa16.94■□□□□ 0.3
PNKP-220ENST00000627232 APCSP02743 223 aa16.94■□□□□ 0.3
PNKP-220ENST00000627232 FOXA3P55318 350 aaPredicted RBP16.94■□□□□ 0.3
PNKP-220ENST00000627232 CLEC5AQ9NY25 188 aa16.94■□□□□ 0.3
PNKP-220ENST00000627232 EPG5Q9HCE0 2579 aa16.93■□□□□ 0.3
PNKP-220ENST00000627232 GRIFINA4D1Z8 144 aa16.93■□□□□ 0.3
PNKP-220ENST00000627232 ESDP10768 282 aa16.93■□□□□ 0.3
PNKP-220ENST00000627232 OR10J3Q5JRS4 329 aa16.93■□□□□ 0.3
PNKP-220ENST00000627232 GLMPQ8WWB7 406 aa16.93■□□□□ 0.3
PNKP-220ENST00000627232 C8orf49Q96NF6 230 aa16.93■□□□□ 0.3
PNKP-220ENST00000627232 PRR25Q96S07 402 aa16.93■□□□□ 0.3
PNKP-220ENST00000627232 LRRK2Q5S007 2527 aa16.92■□□□□ 0.3
PNKP-220ENST00000627232 IGHV3-66A0A0C4DH42 116 aa16.92■□□□□ 0.3
PNKP-220ENST00000627232 HLA-DMBP28068 263 aa16.92■□□□□ 0.3
PNKP-220ENST00000627232 CRIP1P50238 77 aa16.92■□□□□ 0.3
PNKP-220ENST00000627232 HBBP68871 147 aa16.92■□□□□ 0.3
PNKP-220ENST00000627232 S100A12P80511 92 aa16.92■□□□□ 0.3
PNKP-220ENST00000627232 TMEM256Q8N2U0 113 aa16.92■□□□□ 0.3
PNKP-220ENST00000627232 IGHV3-11P01762 117 aa16.91■□□□□ 0.3
PNKP-220ENST00000627232 IGFL4Q6B9Z1 124 aa16.91■□□□□ 0.3
PNKP-220ENST00000627232 TP53TG3Q9ULZ0 132 aa16.91■□□□□ 0.3
PNKP-220ENST00000627232 FBN2P35556 2912 aa16.91■□□□□ 0.3
PNKP-220ENST00000627232 UTP20O75691 2785 aaKnown RBP16.91■□□□□ 0.3
PNKP-220ENST00000627232 IGHV3OR16-13A0A075B7E8 117 aa16.91■□□□□ 0.3
PNKP-220ENST00000627232 IGHV3-74A0A0B4J1X5 117 aa16.91■□□□□ 0.3
PNKP-220ENST00000627232 PSMB8P28062 276 aa16.91■□□□□ 0.3
PNKP-220ENST00000627232 GDF5OSQ5U4N7 250 aa16.91■□□□□ 0.3
PNKP-220ENST00000627232 PGLYRP4Q96LB8 373 aa16.91■□□□□ 0.3
PNKP-220ENST00000627232 IGHV3-49A0A0A0MS15 119 aa16.9■□□□□ 0.3
PNKP-220ENST00000627232 A0A1B0GUS0 222 aa16.9■□□□□ 0.3
PNKP-220ENST00000627232 A0A1W2PS18 150 aa16.9■□□□□ 0.3
PNKP-220ENST00000627232 ZNF705FA8MVS1 300 aaPredicted RBP16.9■□□□□ 0.3
PNKP-220ENST00000627232 UNQ9165/PRO28630Q6UXU0 137 aa16.9■□□□□ 0.3
PNKP-220ENST00000627232 C8orf86Q6ZUL3 223 aa16.9■□□□□ 0.3
PNKP-220ENST00000627232 PSMG3-AS1Q96PY0 264 aa16.9■□□□□ 0.3
PNKP-220ENST00000627232 ASCL2Q99929 193 aa16.9■□□□□ 0.3
PNKP-220ENST00000627232 VGLL1Q99990 258 aa16.9■□□□□ 0.3
PNKP-220ENST00000627232 NDFIP1Q9BT67 221 aa16.9■□□□□ 0.3
PNKP-220ENST00000627232 NPFFR1Q9GZQ6 430 aa16.9■□□□□ 0.3
PNKP-220ENST00000627232 TRAV8-2A0A0B4J237 113 aa16.89■□□□□ 0.29
PNKP-220ENST00000627232 PCP4L1A6NKN8 68 aa16.89■□□□□ 0.29
PNKP-220ENST00000627232 SLAQ13239 276 aa16.89■□□□□ 0.29
PNKP-220ENST00000627232 TMEM95Q3KNT9 176 aa16.89■□□□□ 0.29
PNKP-220ENST00000627232 KIAA1644Q3SXP7 199 aa16.89■□□□□ 0.29
PNKP-220ENST00000627232 FAM162BQ5T6X4 162 aa16.89■□□□□ 0.29
PNKP-220ENST00000627232 Q6AWC8 147 aa16.89■□□□□ 0.29
PNKP-220ENST00000627232 BAGE3Q86Y29 109 aa16.89■□□□□ 0.29
PNKP-220ENST00000627232 PEF1Q9UBV8 284 aaKnown RBP16.89■□□□□ 0.29
PNKP-220ENST00000627232 A8MWP6 167 aa16.88■□□□□ 0.29
PNKP-220ENST00000627232 HAX1O00165 279 aa16.88■□□□□ 0.29
PNKP-220ENST00000627232 PRB4P10163 310 aaPredicted RBP16.88■□□□□ 0.29
PNKP-220ENST00000627232 PAFAH1B2P68402 229 aa16.88■□□□□ 0.29
PNKP-220ENST00000627232 TEX29Q8N6K0 151 aa16.88■□□□□ 0.29
PNKP-220ENST00000627232 NUPR1O60356 82 aa16.87■□□□□ 0.29
PNKP-220ENST00000627232 SH2D1AO60880 128 aa16.87■□□□□ 0.29
PNKP-220ENST00000627232 SRIP30626 198 aa16.87■□□□□ 0.29
PNKP-220ENST00000627232 BMI1P35226 326 aa16.87■□□□□ 0.29
PNKP-220ENST00000627232 CAMPP49913 170 aa16.87■□□□□ 0.29
PNKP-220ENST00000627232 LINC00310P59036 64 aa16.87■□□□□ 0.29
PNKP-220ENST00000627232 SRSF2Q01130 221 aaKnown RBP16.87■□□□□ 0.29
PNKP-220ENST00000627232 JOSD1Q15040 202 aaPredicted RBP16.87■□□□□ 0.29
PNKP-220ENST00000627232 LCNL1Q6ZST4 164 aa16.87■□□□□ 0.29
PNKP-220ENST00000627232 RNF182Q8N6D2 247 aa16.87■□□□□ 0.29
PNKP-220ENST00000627232 SERF1AO75920 110 aa16.86■□□□□ 0.29
PNKP-220ENST00000627232 GZMBP10144 247 aa16.86■□□□□ 0.29
PNKP-220ENST00000627232 TMEM189A5PLL7 270 aa16.86■□□□□ 0.29
PNKP-220ENST00000627232 PRAC2D3DTV9 90 aa16.86■□□□□ 0.29
PNKP-220ENST00000627232 K7EMT4 169 aa16.86■□□□□ 0.29
PNKP-220ENST00000627232 SMAD7O15105 426 aaKnown RBP16.86■□□□□ 0.29
PNKP-220ENST00000627232 RPS20P60866 119 aaKnown RBP16.86■□□□□ 0.29
PNKP-220ENST00000627232 CSPG4Q6UVK1 2322 aa16.85■□□□□ 0.29
PNKP-220ENST00000627232 A0A1B0GUT8 65 aa16.85■□□□□ 0.29
PNKP-220ENST00000627232 A0A1B0GW15 77 aa16.85■□□□□ 0.29
PNKP-220ENST00000627232 HOXA3O43365 443 aaPredicted RBP16.85■□□□□ 0.29
PNKP-220ENST00000627232 RIGQ13278 110 aa16.85■□□□□ 0.29
PNKP-220ENST00000627232 KLF5Q13887 457 aaPredicted RBP16.85■□□□□ 0.29
PNKP-220ENST00000627232 Q8TAT8 98 aa16.85■□□□□ 0.29
PNKP-220ENST00000627232 ZNF702PQ9H963 129 aa16.85■□□□□ 0.29
PNKP-220ENST00000627232 PPP1R14DQ9NXH3 145 aa16.85■□□□□ 0.29
PNKP-220ENST00000627232 CRYBG3Q68DQ2 2970 aa16.84■□□□□ 0.29
PNKP-220ENST00000627232 IGHV7-4-1A0A0J9YVY3 117 aa16.84■□□□□ 0.29
PNKP-220ENST00000627232 FOXE3Q13461 319 aa16.84■□□□□ 0.29
PNKP-220ENST00000627232 FAM106AQ4KMX7 169 aa16.84■□□□□ 0.29
PNKP-220ENST00000627232 GPHB5Q86YW7 130 aa16.84■□□□□ 0.29
PNKP-220ENST00000627232 GATD1Q8NB37 220 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms