RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 GDF5OSQ5U4N7 250 aa14.06□□□□□ -0.16
SQSTM1-216ENST00000626660 MRPL53Q96EL3 112 aaKnown RBP14.06□□□□□ -0.16
SQSTM1-216ENST00000626660 TM2D3Q9BRN9 247 aa14.06□□□□□ -0.16
SQSTM1-216ENST00000626660 CA1P00915 261 aaPredicted RBP14.05□□□□□ -0.16
SQSTM1-216ENST00000626660 IGKV3-20P01619 116 aa14.05□□□□□ -0.16
SQSTM1-216ENST00000626660 GCHFRP30047 84 aa14.05□□□□□ -0.16
SQSTM1-216ENST00000626660 IQCF2Q8IXL9 164 aa14.05□□□□□ -0.16
SQSTM1-216ENST00000626660 LYPD1Q8N2G4 141 aa14.05□□□□□ -0.16
SQSTM1-216ENST00000626660 PHYHIPLQ96FC7 376 aa14.05□□□□□ -0.16
SQSTM1-216ENST00000626660 ZNF705FA8MVS1 300 aaPredicted RBP14.04□□□□□ -0.16
SQSTM1-216ENST00000626660 RANP62826 216 aaKnown RBP14.04□□□□□ -0.16
SQSTM1-216ENST00000626660 HIST1H1AQ02539 215 aaPredicted RBP14.04□□□□□ -0.16
SQSTM1-216ENST00000626660 ICAM4Q14773 271 aa14.04□□□□□ -0.16
SQSTM1-216ENST00000626660 ZNF726P1Q15940 193 aa14.04□□□□□ -0.16
SQSTM1-216ENST00000626660 DPPA3Q6W0C5 159 aa14.04□□□□□ -0.16
SQSTM1-216ENST00000626660 SSX7Q7RTT5 188 aa14.04□□□□□ -0.16
SQSTM1-216ENST00000626660 EXOC3-AS1Q8N2X6 119 aa14.04□□□□□ -0.16
SQSTM1-216ENST00000626660 OR8A1Q8NGG7 326 aa14.04□□□□□ -0.16
SQSTM1-216ENST00000626660 OR10J6PQ8NGY7 276 aa14.04□□□□□ -0.16
SQSTM1-216ENST00000626660 FAM213BQ8TBF2 198 aa14.04□□□□□ -0.16
SQSTM1-216ENST00000626660 CLUHP3Q96NS8 147 aa14.04□□□□□ -0.16
SQSTM1-216ENST00000626660 TMEM167BQ9NRX6 74 aa14.04□□□□□ -0.16
SQSTM1-216ENST00000626660 Q6ZWC4 215 aa14.03□□□□□ -0.16
SQSTM1-216ENST00000626660 Q9H3A6 140 aa14.03□□□□□ -0.16
SQSTM1-216ENST00000626660 MAP1LC3B2A6NCE7 125 aa14.02□□□□□ -0.17
SQSTM1-216ENST00000626660 M0R3E3 92 aa14.02□□□□□ -0.17
SQSTM1-216ENST00000626660 ZNF705DP0CH99 300 aaPredicted RBP14.02□□□□□ -0.17
SQSTM1-216ENST00000626660 ZNF705BP0CI00 300 aaPredicted RBP14.02□□□□□ -0.17
SQSTM1-216ENST00000626660 RAB5CP51148 216 aa14.02□□□□□ -0.17
SQSTM1-216ENST00000626660 CNN1P51911 297 aaKnown RBP14.02□□□□□ -0.17
SQSTM1-216ENST00000626660 FAM74A1Q5RGS3 127 aa14.02□□□□□ -0.17
SQSTM1-216ENST00000626660 C1QTNF4Q9BXJ3 329 aa14.02□□□□□ -0.17
SQSTM1-216ENST00000626660 MAP1LC3BQ9GZQ8 125 aa14.02□□□□□ -0.17
SQSTM1-216ENST00000626660 PPP1R14DQ9NXH3 145 aa14.02□□□□□ -0.17
SQSTM1-216ENST00000626660 PLA2G2EQ9NZK7 142 aa14.02□□□□□ -0.17
SQSTM1-216ENST00000626660 CSN1S1P47710 185 aa14.01□□□□□ -0.17
SQSTM1-216ENST00000626660 FHITP49789 147 aa14.01□□□□□ -0.17
SQSTM1-216ENST00000626660 DEFB135Q30KP9 77 aa14.01□□□□□ -0.17
SQSTM1-216ENST00000626660 OTORQ9NRC9 128 aa14.01□□□□□ -0.17
SQSTM1-216ENST00000626660 A8MTW9 85 aa14□□□□□ -0.17
SQSTM1-216ENST00000626660 PRAC2D3DTV9 90 aa14□□□□□ -0.17
SQSTM1-216ENST00000626660 PRB4P10163 310 aaPredicted RBP14□□□□□ -0.17
SQSTM1-216ENST00000626660 FGF8P55075 233 aaPredicted RBP14□□□□□ -0.17
SQSTM1-216ENST00000626660 CMTM2Q8TAZ6 248 aa14□□□□□ -0.17
SQSTM1-216ENST00000626660 SUN5Q8TC36 379 aa14□□□□□ -0.17
SQSTM1-216ENST00000626660 RCHY1Q96PM5 261 aa14□□□□□ -0.17
SQSTM1-216ENST00000626660 RETNQ9HD89 108 aa14□□□□□ -0.17
SQSTM1-216ENST00000626660 TP53TG1Q9Y2A0 90 aa14□□□□□ -0.17
SQSTM1-216ENST00000626660 NBEAL2Q6ZNJ1 2754 aa14□□□□□ -0.17
SQSTM1-216ENST00000626660 SPRY2O43597 315 aa13.99□□□□□ -0.17
SQSTM1-216ENST00000626660 RXFP4Q8TDU9 374 aa13.99□□□□□ -0.17
SQSTM1-216ENST00000626660 SFT2D1Q8WV19 159 aa13.99□□□□□ -0.17
SQSTM1-216ENST00000626660 RNF183Q96D59 192 aa13.99□□□□□ -0.17
SQSTM1-216ENST00000626660 U3KQK5 164 aa13.99□□□□□ -0.17
SQSTM1-216ENST00000626660 PGPA6NDG6 321 aa13.98□□□□□ -0.17
SQSTM1-216ENST00000626660 AMBPP02760 352 aa13.98□□□□□ -0.17
SQSTM1-216ENST00000626660 H2AFB1P0C5Y9 115 aa13.98□□□□□ -0.17
SQSTM1-216ENST00000626660 SULT1A2P50226 295 aa13.98□□□□□ -0.17
SQSTM1-216ENST00000626660 FXYD7P58549 80 aa13.98□□□□□ -0.17
SQSTM1-216ENST00000626660 MBD3L1Q8WWY6 194 aa13.98□□□□□ -0.17
SQSTM1-216ENST00000626660 SLC35B3Q9H1N7 401 aa13.98□□□□□ -0.17
SQSTM1-216ENST00000626660 XCL2Q9UBD3 114 aa13.98□□□□□ -0.17
SQSTM1-216ENST00000626660 DNAH9Q9NYC9 4486 aa13.98□□□□□ -0.17
SQSTM1-216ENST00000626660 NPIPB6E9PJ23 425 aa13.97□□□□□ -0.17
SQSTM1-216ENST00000626660 GIG44P09565 113 aaPredicted RBP13.97□□□□□ -0.17
SQSTM1-216ENST00000626660 AMTNQ6UX39 209 aa13.97□□□□□ -0.17
SQSTM1-216ENST00000626660 OVOL2Q9BRP0 275 aa13.97□□□□□ -0.17
SQSTM1-216ENST00000626660 TMPRSS5Q9H3S3 457 aa13.97□□□□□ -0.17
SQSTM1-216ENST00000626660 BOLA1Q9Y3E2 137 aa13.97□□□□□ -0.17
SQSTM1-216ENST00000626660 BOLA2-SMG1P6H3BVE0 249 aa13.96□□□□□ -0.17
SQSTM1-216ENST00000626660 SLC25A5P05141 298 aaKnown RBP13.96□□□□□ -0.17
SQSTM1-216ENST00000626660 TENM3Q9P273 2699 aa13.96□□□□□ -0.18
SQSTM1-216ENST00000626660 IGKV2-40A0A087WW87 121 aaPredicted RBP13.95□□□□□ -0.18
SQSTM1-216ENST00000626660 A0A1W2PRE2 83 aa13.95□□□□□ -0.18
SQSTM1-216ENST00000626660 TEX46H3BTG2 121 aa13.95□□□□□ -0.18
SQSTM1-216ENST00000626660 IGKV2D-40P01614 121 aaPredicted RBP13.95□□□□□ -0.18
SQSTM1-216ENST00000626660 TSPOP30536 169 aa13.95□□□□□ -0.18
SQSTM1-216ENST00000626660 TMEM78Q5T7P6 136 aa13.95□□□□□ -0.18
SQSTM1-216ENST00000626660 ARL6IP6Q8N6S5 226 aa13.95□□□□□ -0.18
SQSTM1-216ENST00000626660 LINC00477Q96M19 166 aa13.95□□□□□ -0.18
SQSTM1-216ENST00000626660 RPH3ALQ9UNE2 315 aa13.95□□□□□ -0.18
SQSTM1-216ENST00000626660 COL7A1Q02388 2944 aa13.94□□□□□ -0.18
SQSTM1-216ENST00000626660 A0A1B0GV50 99 aa13.94□□□□□ -0.18
SQSTM1-216ENST00000626660 RBAKDNA6NC62 111 aa13.94□□□□□ -0.18
SQSTM1-216ENST00000626660 DIRC3C9JPN6 131 aa13.94□□□□□ -0.18
SQSTM1-216ENST00000626660 UBE2G2P60604 165 aa13.94□□□□□ -0.18
SQSTM1-216ENST00000626660 SUMO1P63165 101 aaKnown RBP13.94□□□□□ -0.18
SQSTM1-216ENST00000626660 SPINK13Q1W4C9 94 aa13.94□□□□□ -0.18
SQSTM1-216ENST00000626660 ALKAL2Q6UX46 152 aa13.94□□□□□ -0.18
SQSTM1-216ENST00000626660 C5orf17Q8NAS9 161 aa13.94□□□□□ -0.18
SQSTM1-216ENST00000626660 STAB2Q8WWQ8 2551 aa13.94□□□□□ -0.18
SQSTM1-216ENST00000626660 M0R2Z0 102 aa13.93□□□□□ -0.18
SQSTM1-216ENST00000626660 HBE1P02100 147 aa13.93□□□□□ -0.18
SQSTM1-216ENST00000626660 LEPP41159 167 aa13.93□□□□□ -0.18
SQSTM1-216ENST00000626660 PPT1P50897 306 aa13.93□□□□□ -0.18
SQSTM1-216ENST00000626660 ERCC8Q13216 396 aa13.93□□□□□ -0.18
SQSTM1-216ENST00000626660 C9orf47Q6ZRZ4 202 aa13.93□□□□□ -0.18
SQSTM1-216ENST00000626660 ODF3Q96PU9 254 aa13.93□□□□□ -0.18
SQSTM1-216ENST00000626660 RARRES2Q99969 163 aa13.93□□□□□ -0.18
SQSTM1-216ENST00000626660 NKX6-2Q9C056 277 aaPredicted RBP13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms