RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 RBPMS2Q6ZRY4 209 aaKnown RBP12.57□□□□□ -0.4
LDB3-208ENST00000623007 Q8N2B8 174 aa12.57□□□□□ -0.4
LDB3-208ENST00000623007 GLMPQ8WWB7 406 aa12.57□□□□□ -0.4
LDB3-208ENST00000623007 DAZ1Q9NQZ3 744 aaKnown RBP12.57□□□□□ -0.4
LDB3-208ENST00000623007 UFC1Q9Y3C8 167 aa12.57□□□□□ -0.4
LDB3-208ENST00000623007 TRAV8-1A0A0A6YYK1 113 aa12.57□□□□□ -0.4
LDB3-208ENST00000623007 HIGD1CA8MV81 97 aa12.57□□□□□ -0.4
LDB3-208ENST00000623007 M0R3E3 92 aa12.57□□□□□ -0.4
LDB3-208ENST00000623007 SRSF2Q01130 221 aaKnown RBP12.57□□□□□ -0.4
LDB3-208ENST00000623007 HIST3H2BBQ8N257 126 aa12.57□□□□□ -0.4
LDB3-208ENST00000623007 NUP35Q8NFH5 326 aa12.57□□□□□ -0.4
LDB3-208ENST00000623007 NEU1Q99519 415 aa12.57□□□□□ -0.4
LDB3-208ENST00000623007 PPP1R14DQ9NXH3 145 aa12.57□□□□□ -0.4
LDB3-208ENST00000623007 LRRK2Q5S007 2527 aa12.56□□□□□ -0.4
LDB3-208ENST00000623007 TACC2O95359 2948 aa12.56□□□□□ -0.4
LDB3-208ENST00000623007 HOXA3O43365 443 aaPredicted RBP12.56□□□□□ -0.4
LDB3-208ENST00000623007 RNF152Q8N8N0 203 aa12.56□□□□□ -0.4
LDB3-208ENST00000623007 SGK494Q96LW2 274 aa12.56□□□□□ -0.4
LDB3-208ENST00000623007 KLK15Q9H2R5 256 aa12.56□□□□□ -0.4
LDB3-208ENST00000623007 LENEPQ9Y5L5 61 aa12.56□□□□□ -0.4
LDB3-208ENST00000623007 CBLN1P23435 193 aa12.55□□□□□ -0.4
LDB3-208ENST00000623007 FAM162BQ5T6X4 162 aa12.55□□□□□ -0.4
LDB3-208ENST00000623007 BORCS7Q96B45 105 aa12.55□□□□□ -0.4
LDB3-208ENST00000623007 UBE2E2Q96LR5 201 aa12.55□□□□□ -0.4
LDB3-208ENST00000623007 PRR25Q96S07 402 aa12.55□□□□□ -0.4
LDB3-208ENST00000623007 TCL1AP56279 114 aa12.54□□□□□ -0.4
LDB3-208ENST00000623007 HBBP68871 147 aa12.54□□□□□ -0.4
LDB3-208ENST00000623007 Q0VG73 95 aa12.54□□□□□ -0.4
LDB3-208ENST00000623007 TMEM136Q6ZRR5 245 aa12.54□□□□□ -0.4
LDB3-208ENST00000623007 Q6ZS46 218 aa12.54□□□□□ -0.4
LDB3-208ENST00000623007 C8orf86Q6ZUL3 223 aa12.54□□□□□ -0.4
LDB3-208ENST00000623007 OR2D3Q8NGH3 330 aa12.54□□□□□ -0.4
LDB3-208ENST00000623007 TMEM18Q96B42 140 aa12.54□□□□□ -0.4
LDB3-208ENST00000623007 IGHV7-4-1A0A0J9YVY3 117 aa12.54□□□□□ -0.4
LDB3-208ENST00000623007 CRISP2P16562 243 aa12.54□□□□□ -0.4
LDB3-208ENST00000623007 OR10J3Q5JRS4 329 aa12.54□□□□□ -0.4
LDB3-208ENST00000623007 MYOZ3Q8TDC0 251 aa12.54□□□□□ -0.4
LDB3-208ENST00000623007 ZC2HC1AQ96GY0 325 aa12.54□□□□□ -0.4
LDB3-208ENST00000623007 ZNF702PQ9H963 129 aa12.54□□□□□ -0.4
LDB3-208ENST00000623007 IGHV3OR16-8A0A075B7F1 116 aa12.53□□□□□ -0.4
LDB3-208ENST00000623007 CD5LO43866 347 aa12.53□□□□□ -0.4
LDB3-208ENST00000623007 IGHV3-11P01762 117 aa12.53□□□□□ -0.4
LDB3-208ENST00000623007 APCSP02743 223 aa12.53□□□□□ -0.4
LDB3-208ENST00000623007 RAB4BP61018 213 aa12.53□□□□□ -0.4
LDB3-208ENST00000623007 DNLZQ5SXM8 178 aa12.53□□□□□ -0.4
LDB3-208ENST00000623007 WFDC11Q8NEX6 87 aa12.53□□□□□ -0.4
LDB3-208ENST00000623007 C16orf92Q96LL3 132 aa12.53□□□□□ -0.4
LDB3-208ENST00000623007 C12orf57Q99622 126 aa12.53□□□□□ -0.4
LDB3-208ENST00000623007 ASCL2Q99929 193 aa12.53□□□□□ -0.4
LDB3-208ENST00000623007 LGALS9O00182 355 aa12.52□□□□□ -0.4
LDB3-208ENST00000623007 CA1P00915 261 aaPredicted RBP12.52□□□□□ -0.4
LDB3-208ENST00000623007 RIGQ13278 110 aa12.52□□□□□ -0.4
LDB3-208ENST00000623007 TMEM78Q5T7P6 136 aa12.52□□□□□ -0.4
LDB3-208ENST00000623007 MRPL54Q6P161 138 aaKnown RBP12.52□□□□□ -0.4
LDB3-208ENST00000623007 WFDC12Q8WWY7 111 aa12.52□□□□□ -0.4
LDB3-208ENST00000623007 PACRGQ96M98 296 aaPredicted RBP12.52□□□□□ -0.4
LDB3-208ENST00000623007 A0A1B0GXF2 115 aa12.51□□□□□ -0.41
LDB3-208ENST00000623007 A8MWP6 167 aa12.51□□□□□ -0.41
LDB3-208ENST00000623007 OVOL1O14753 267 aa12.51□□□□□ -0.41
LDB3-208ENST00000623007 LGALS1P09382 135 aaKnown RBP12.51□□□□□ -0.41
LDB3-208ENST00000623007 LINC00322Q6ZN03 302 aaPredicted RBP12.51□□□□□ -0.41
LDB3-208ENST00000623007 C9orf47Q6ZRZ4 202 aa12.51□□□□□ -0.41
LDB3-208ENST00000623007 REC114Q7Z4M0 266 aa12.51□□□□□ -0.41
LDB3-208ENST00000623007 NRN1Q9NPD7 142 aa12.51□□□□□ -0.41
LDB3-208ENST00000623007 SMPXQ9UHP9 88 aa12.51□□□□□ -0.41
LDB3-208ENST00000623007 IGKV2-40A0A087WW87 121 aaPredicted RBP12.51□□□□□ -0.41
LDB3-208ENST00000623007 TRBV7-9A0A0J9YWB2 115 aa12.51□□□□□ -0.41
LDB3-208ENST00000623007 HAX1O00165 279 aa12.51□□□□□ -0.41
LDB3-208ENST00000623007 IGKV2D-40P01614 121 aaPredicted RBP12.51□□□□□ -0.41
LDB3-208ENST00000623007 TRBV12-3P01733 135 aa12.51□□□□□ -0.41
LDB3-208ENST00000623007 APOHP02749 345 aaPredicted RBP12.51□□□□□ -0.41
LDB3-208ENST00000623007 ESDP10768 282 aa12.51□□□□□ -0.41
LDB3-208ENST00000623007 PAFAH1B2P68402 229 aa12.51□□□□□ -0.41
LDB3-208ENST00000623007 DMRTA1Q5VZB9 504 aa12.51□□□□□ -0.41
LDB3-208ENST00000623007 UNQ9165/PRO28630Q6UXU0 137 aa12.51□□□□□ -0.41
LDB3-208ENST00000623007 GPR61Q9BZJ8 451 aa12.51□□□□□ -0.41
LDB3-208ENST00000623007 TMEM160Q9NX00 188 aa12.51□□□□□ -0.41
LDB3-208ENST00000623007 TMEM189A5PLL7 270 aa12.5□□□□□ -0.41
LDB3-208ENST00000623007 FABP5P3A8MUU1 101 aa12.5□□□□□ -0.41
LDB3-208ENST00000623007 ZNF207O43670 478 aaKnown RBP12.5□□□□□ -0.41
LDB3-208ENST00000623007 SIGLECL1Q8N7X8 197 aa12.5□□□□□ -0.41
LDB3-208ENST00000623007 LINC00477Q96M19 166 aa12.5□□□□□ -0.41
LDB3-208ENST00000623007 A0A1B0GUT8 65 aa12.49□□□□□ -0.41
LDB3-208ENST00000623007 ID1P41134 155 aa12.49□□□□□ -0.41
LDB3-208ENST00000623007 ZNF138P52744 262 aa12.49□□□□□ -0.41
LDB3-208ENST00000623007 HIST1H2BLQ99880 126 aa12.49□□□□□ -0.41
LDB3-208ENST00000623007 RHPN1-AS1Q9BWJ2 59 aa12.49□□□□□ -0.41
LDB3-208ENST00000623007 HECTD1Q9ULT8 2610 aa12.49□□□□□ -0.41
LDB3-208ENST00000623007 USP9YO00507 2555 aaPredicted RBP12.49□□□□□ -0.41
LDB3-208ENST00000623007 TRAV8-2A0A0B4J237 113 aa12.48□□□□□ -0.41
LDB3-208ENST00000623007 IGHV3-66A0A0C4DH42 116 aa12.48□□□□□ -0.41
LDB3-208ENST00000623007 SPINK4O60575 86 aa12.48□□□□□ -0.41
LDB3-208ENST00000623007 HIST1H1AQ02539 215 aaPredicted RBP12.48□□□□□ -0.41
LDB3-208ENST00000623007 GTSF1Q8WW33 167 aa12.48□□□□□ -0.41
LDB3-208ENST00000623007 SH2D1AO60880 128 aa12.48□□□□□ -0.41
LDB3-208ENST00000623007 FABP4P15090 132 aa12.48□□□□□ -0.41
LDB3-208ENST00000623007 S100A12P80511 92 aa12.48□□□□□ -0.41
LDB3-208ENST00000623007 TMEM95Q3KNT9 176 aa12.48□□□□□ -0.41
LDB3-208ENST00000623007 TCF24Q7RTU0 167 aa12.48□□□□□ -0.41
LDB3-208ENST00000623007 BAGE3Q86Y29 109 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms