RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 LOXP28300 417 aaPredicted RBP11.27□□□□□ -0.6
CPSF1-212ENST00000616140 STPG4Q8N801 248 aa11.27□□□□□ -0.6
CPSF1-212ENST00000616140 RHPN1-AS1Q9BWJ2 59 aa11.27□□□□□ -0.6
CPSF1-212ENST00000616140 IGHV3-73A0A0B4J1V6 119 aa11.27□□□□□ -0.61
CPSF1-212ENST00000616140 LINC01549A6NIU2 74 aa11.27□□□□□ -0.61
CPSF1-212ENST00000616140 B4DSR2 109 aa11.27□□□□□ -0.61
CPSF1-212ENST00000616140 CFHR2P36980 270 aa11.27□□□□□ -0.61
CPSF1-212ENST00000616140 PAX2Q02962 417 aa11.27□□□□□ -0.61
CPSF1-212ENST00000616140 ERCC8Q13216 396 aa11.27□□□□□ -0.61
CPSF1-212ENST00000616140 GAGE13Q4V321 117 aa11.27□□□□□ -0.61
CPSF1-212ENST00000616140 C20orf144Q9BQM9 153 aa11.27□□□□□ -0.61
CPSF1-212ENST00000616140 CHD3Q12873 2000 aaKnown RBP11.27□□□□□ -0.61
CPSF1-212ENST00000616140 TRGV4A0A0C4DH28 118 aa11.27□□□□□ -0.61
CPSF1-212ENST00000616140 OVOL3O00110 214 aa11.27□□□□□ -0.61
CPSF1-212ENST00000616140 TMEM95Q3KNT9 176 aa11.27□□□□□ -0.61
CPSF1-212ENST00000616140 GNLYP22749 145 aa11.26□□□□□ -0.61
CPSF1-212ENST00000616140 TDGF1P3P51864 188 aa11.26□□□□□ -0.61
CPSF1-212ENST00000616140 C3orf36Q3SXR2 165 aa11.26□□□□□ -0.61
CPSF1-212ENST00000616140 Q8NFD4 153 aa11.26□□□□□ -0.61
CPSF1-212ENST00000616140 SRSF8Q9BRL6 282 aaKnown RBP11.26□□□□□ -0.61
CPSF1-212ENST00000616140 TPSG1Q9NRR2 321 aa11.26□□□□□ -0.61
CPSF1-212ENST00000616140 PLXNB1O43157 2135 aa11.26□□□□□ -0.61
CPSF1-212ENST00000616140 NCOR2Q9Y618 2525 aa11.26□□□□□ -0.61
CPSF1-212ENST00000616140 NDUFB8O95169 186 aa11.26□□□□□ -0.61
CPSF1-212ENST00000616140 IGLV1-44P01699 117 aa11.26□□□□□ -0.61
CPSF1-212ENST00000616140 YPEL3P61236 119 aaPredicted RBP11.26□□□□□ -0.61
CPSF1-212ENST00000616140 SLAQ13239 276 aa11.26□□□□□ -0.61
CPSF1-212ENST00000616140 SNHG12Q9BXW3 62 aa11.26□□□□□ -0.61
CPSF1-212ENST00000616140 EML6Q6ZMW3 1958 aa11.25□□□□□ -0.61
CPSF1-212ENST00000616140 IGLV3-9A0A075B6K5 115 aa11.25□□□□□ -0.61
CPSF1-212ENST00000616140 Q8TCH9 128 aa11.25□□□□□ -0.61
CPSF1-212ENST00000616140 NCOR1P1Q9H4R4 102 aa11.25□□□□□ -0.61
CPSF1-212ENST00000616140 V9GYV3 84 aa11.25□□□□□ -0.61
CPSF1-212ENST00000616140 A8MWV9 139 aa11.25□□□□□ -0.61
CPSF1-212ENST00000616140 DTX1Q86Y01 620 aa11.25□□□□□ -0.61
CPSF1-212ENST00000616140 CHCHD5Q9BSY4 110 aa11.25□□□□□ -0.61
CPSF1-212ENST00000616140 GFRA4Q9GZZ7 299 aa11.25□□□□□ -0.61
CPSF1-212ENST00000616140 CSTL1Q9H114 145 aa11.25□□□□□ -0.61
CPSF1-212ENST00000616140 UBE2V1Q13404 147 aa11.25□□□□□ -0.61
CPSF1-212ENST00000616140 ZNF833PQ6ZTB9 187 aa11.25□□□□□ -0.61
CPSF1-212ENST00000616140 TRBV19A0A075B6N1 114 aa11.25□□□□□ -0.61
CPSF1-212ENST00000616140 VCYO14598 125 aa11.25□□□□□ -0.61
CPSF1-212ENST00000616140 IGHV2-70P01814 119 aa11.25□□□□□ -0.61
CPSF1-212ENST00000616140 LURAP1LQ8IV03 231 aa11.25□□□□□ -0.61
CPSF1-212ENST00000616140 ERG28Q9UKR5 140 aa11.25□□□□□ -0.61
CPSF1-212ENST00000616140 FAM231BA6NCW3 169 aa11.24□□□□□ -0.61
CPSF1-212ENST00000616140 TNFRSF6BO95407 300 aa11.24□□□□□ -0.61
CPSF1-212ENST00000616140 DIAPH2-AS1Q14236 149 aa11.24□□□□□ -0.61
CPSF1-212ENST00000616140 KIR3DS1Q14943 382 aa11.24□□□□□ -0.61
CPSF1-212ENST00000616140 Q6ZWC4 215 aa11.24□□□□□ -0.61
CPSF1-212ENST00000616140 USMG5Q96IX5 58 aa11.24□□□□□ -0.61
CPSF1-212ENST00000616140 RCHY1Q96PM5 261 aa11.24□□□□□ -0.61
CPSF1-212ENST00000616140 ZNF492Q9P255 531 aa11.24□□□□□ -0.61
CPSF1-212ENST00000616140 A0A087WWL8 130 aa11.24□□□□□ -0.61
CPSF1-212ENST00000616140 ATP6V0E1O15342 81 aa11.24□□□□□ -0.61
CPSF1-212ENST00000616140 CEACAM8P31997 349 aaPredicted RBP11.24□□□□□ -0.61
CPSF1-212ENST00000616140 CFAP161Q6P656 301 aa11.24□□□□□ -0.61
CPSF1-212ENST00000616140 PIP4P2Q8N4L2 257 aa11.24□□□□□ -0.61
CPSF1-212ENST00000616140 NACAE9PAV3 2078 aa11.24□□□□□ -0.61
CPSF1-212ENST00000616140 TLN1Q9Y490 2541 aaKnown RBP11.23□□□□□ -0.61
CPSF1-212ENST00000616140 G3V318 75 aa11.23□□□□□ -0.61
CPSF1-212ENST00000616140 FAM215AQ9Y5M1 114 aa11.23□□□□□ -0.61
CPSF1-212ENST00000616140 CT83Q5H943 113 aa11.23□□□□□ -0.61
CPSF1-212ENST00000616140 ASPHD1Q5U4P2 390 aa11.23□□□□□ -0.61
CPSF1-212ENST00000616140 LYPD6Q86Y78 171 aa11.23□□□□□ -0.61
CPSF1-212ENST00000616140 LYPD6BQ8NI32 183 aa11.22□□□□□ -0.61
CPSF1-212ENST00000616140 SIGMAR1Q99720 223 aa11.22□□□□□ -0.61
CPSF1-212ENST00000616140 TMEM238C9JI98 176 aa11.22□□□□□ -0.61
CPSF1-212ENST00000616140 FAM104BQ5XKR9 115 aa11.22□□□□□ -0.61
CPSF1-212ENST00000616140 IGFL3Q6UXB1 125 aa11.22□□□□□ -0.61
CPSF1-212ENST00000616140 C11orf52Q96A22 123 aa11.22□□□□□ -0.61
CPSF1-212ENST00000616140 DAZ1Q9NQZ3 744 aaKnown RBP11.22□□□□□ -0.61
CPSF1-212ENST00000616140 IGLC2P0DOY2 106 aa11.22□□□□□ -0.61
CPSF1-212ENST00000616140 IGLC3P0DOY3 106 aa11.22□□□□□ -0.61
CPSF1-212ENST00000616140 DPH3Q96FX2 82 aa11.22□□□□□ -0.61
CPSF1-212ENST00000616140 FGF23Q9GZV9 251 aaPredicted RBP11.22□□□□□ -0.61
CPSF1-212ENST00000616140 IGF2RP11717 2491 aa11.22□□□□□ -0.61
CPSF1-212ENST00000616140 NPC2P61916 151 aa11.21□□□□□ -0.61
CPSF1-212ENST00000616140 FAM231DQ6ZW35 169 aa11.21□□□□□ -0.61
CPSF1-212ENST00000616140 C8orf49Q96NF6 230 aa11.21□□□□□ -0.61
CPSF1-212ENST00000616140 RBMY1BA6NDE4 496 aaKnown RBP11.21□□□□□ -0.61
CPSF1-212ENST00000616140 RBMY1EA6NEQ0 496 aaKnown RBP11.21□□□□□ -0.61
CPSF1-212ENST00000616140 CD5LO43866 347 aa11.21□□□□□ -0.61
CPSF1-212ENST00000616140 RBMY1DP0C7P1 496 aaKnown RBP11.21□□□□□ -0.61
CPSF1-212ENST00000616140 RBMY1A1P0DJD3 496 aaKnown RBP11.21□□□□□ -0.61
CPSF1-212ENST00000616140 RBMY1CP0DJD4 496 aa11.21□□□□□ -0.61
CPSF1-212ENST00000616140 PRR20EP86478 221 aa11.21□□□□□ -0.61
CPSF1-212ENST00000616140 PRR20CP86479 221 aa11.21□□□□□ -0.61
CPSF1-212ENST00000616140 PRR20DP86480 221 aa11.21□□□□□ -0.61
CPSF1-212ENST00000616140 PRR20BP86481 221 aa11.21□□□□□ -0.61
CPSF1-212ENST00000616140 PRR20AP86496 221 aa11.21□□□□□ -0.61
CPSF1-212ENST00000616140 SSC4DQ8WTU2 575 aa11.21□□□□□ -0.61
CPSF1-212ENST00000616140 NAV2Q8IVL1 2488 aa11.21□□□□□ -0.61
CPSF1-212ENST00000616140 GAGE12BA1L429 117 aa11.21□□□□□ -0.62
CPSF1-212ENST00000616140 LINC00311Q8N616 119 aa11.21□□□□□ -0.62
CPSF1-212ENST00000616140 ARHGAP21Q5T5U3 1957 aa11.21□□□□□ -0.62
CPSF1-212ENST00000616140 TRGV1A0A0A0MS02 117 aa11.21□□□□□ -0.62
CPSF1-212ENST00000616140 ADARB2-AS1A8MUL3 147 aa11.21□□□□□ -0.62
CPSF1-212ENST00000616140 DSCR9P59020 149 aa11.2□□□□□ -0.62
CPSF1-212ENST00000616140 TEX36Q5VZQ5 186 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 117.8 ms