RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 UMAD1C9J7I0 102 aa14.18□□□□□ -0.14
UPF1-209ENST00000600310 DUSP14O95147 198 aaKnown RBP14.18□□□□□ -0.14
UPF1-209ENST00000600310 SSX7Q7RTT5 188 aa14.18□□□□□ -0.14
UPF1-209ENST00000600310 LYPD1Q8N2G4 141 aa14.18□□□□□ -0.14
UPF1-209ENST00000600310 EXOC3-AS1Q8N2X6 119 aa14.18□□□□□ -0.14
UPF1-209ENST00000600310 OR8A1Q8NGG7 326 aa14.18□□□□□ -0.14
UPF1-209ENST00000600310 PHYHIPLQ96FC7 376 aa14.18□□□□□ -0.14
UPF1-209ENST00000600310 AAMDCQ9H7C9 122 aa14.18□□□□□ -0.14
UPF1-209ENST00000600310 CXorf1O96002 111 aa14.17□□□□□ -0.14
UPF1-209ENST00000600310 GIG44P09565 113 aaPredicted RBP14.17□□□□□ -0.14
UPF1-209ENST00000600310 GCHFRP30047 84 aa14.17□□□□□ -0.14
UPF1-209ENST00000600310 CNN1P51911 297 aaKnown RBP14.17□□□□□ -0.14
UPF1-209ENST00000600310 NUTF2P61970 127 aaKnown RBP14.17□□□□□ -0.14
UPF1-209ENST00000600310 OR4B1Q8NGF8 309 aa14.17□□□□□ -0.14
UPF1-209ENST00000600310 SUN5Q8TC36 379 aa14.17□□□□□ -0.14
UPF1-209ENST00000600310 TMED6Q8WW62 240 aa14.17□□□□□ -0.14
UPF1-209ENST00000600310 AGRNO00468 2067 aa14.17□□□□□ -0.14
UPF1-209ENST00000600310 M0R3E3 92 aa14.16□□□□□ -0.14
UPF1-209ENST00000600310 CA1P00915 261 aaPredicted RBP14.16□□□□□ -0.14
UPF1-209ENST00000600310 IGKV3-20P01619 116 aa14.16□□□□□ -0.14
UPF1-209ENST00000600310 ZNF705DP0CH99 300 aaPredicted RBP14.16□□□□□ -0.14
UPF1-209ENST00000600310 ZNF705BP0CI00 300 aaPredicted RBP14.16□□□□□ -0.14
UPF1-209ENST00000600310 NKX2-5P52952 324 aaPredicted RBP14.16□□□□□ -0.14
UPF1-209ENST00000600310 RANP62826 216 aaKnown RBP14.16□□□□□ -0.14
UPF1-209ENST00000600310 ICAM4Q14773 271 aa14.16□□□□□ -0.14
UPF1-209ENST00000600310 EIF5AL1Q6IS14 154 aaKnown RBP14.16□□□□□ -0.14
UPF1-209ENST00000600310 RETNQ9HD89 108 aa14.16□□□□□ -0.14
UPF1-209ENST00000600310 TP53TG1Q9Y2A0 90 aa14.16□□□□□ -0.14
UPF1-209ENST00000600310 PRAC2D3DTV9 90 aa14.15□□□□□ -0.14
UPF1-209ENST00000600310 HIST1H1AQ02539 215 aaPredicted RBP14.15□□□□□ -0.14
UPF1-209ENST00000600310 Q9H3A6 140 aa14.15□□□□□ -0.14
UPF1-209ENST00000600310 TMEM167BQ9NRX6 74 aa14.15□□□□□ -0.14
UPF1-209ENST00000600310 U3KQK5 164 aa14.15□□□□□ -0.14
UPF1-209ENST00000600310 PRB4P10163 310 aaPredicted RBP14.14□□□□□ -0.15
UPF1-209ENST00000600310 FHITP49789 147 aa14.14□□□□□ -0.15
UPF1-209ENST00000600310 DEFB135Q30KP9 77 aa14.14□□□□□ -0.15
UPF1-209ENST00000600310 AMTNQ6UX39 209 aa14.14□□□□□ -0.15
UPF1-209ENST00000600310 DPPA3Q6W0C5 159 aa14.14□□□□□ -0.15
UPF1-209ENST00000600310 RNF183Q96D59 192 aa14.14□□□□□ -0.15
UPF1-209ENST00000600310 RCHY1Q96PM5 261 aa14.14□□□□□ -0.15
UPF1-209ENST00000600310 OVOL2Q9BRP0 275 aa14.14□□□□□ -0.15
UPF1-209ENST00000600310 SPRY2O43597 315 aa14.13□□□□□ -0.15
UPF1-209ENST00000600310 OR10J6PQ8NGY7 276 aa14.13□□□□□ -0.15
UPF1-209ENST00000600310 C1QTNF4Q9BXJ3 329 aa14.13□□□□□ -0.15
UPF1-209ENST00000600310 OTORQ9NRC9 128 aa14.13□□□□□ -0.15
UPF1-209ENST00000600310 DNAH9Q9NYC9 4486 aa14.12□□□□□ -0.15
UPF1-209ENST00000600310 MAP1LC3B2A6NCE7 125 aa14.12□□□□□ -0.15
UPF1-209ENST00000600310 RAB5CP51148 216 aa14.12□□□□□ -0.15
UPF1-209ENST00000600310 FAM213BQ8TBF2 198 aa14.12□□□□□ -0.15
UPF1-209ENST00000600310 MBD3L1Q8WWY6 194 aa14.12□□□□□ -0.15
UPF1-209ENST00000600310 MAP1LC3BQ9GZQ8 125 aa14.12□□□□□ -0.15
UPF1-209ENST00000600310 SLC35B3Q9H1N7 401 aa14.12□□□□□ -0.15
UPF1-209ENST00000600310 PGPA6NDG6 321 aa14.11□□□□□ -0.15
UPF1-209ENST00000600310 CSN1S1P47710 185 aa14.11□□□□□ -0.15
UPF1-209ENST00000600310 FGF8P55075 233 aaPredicted RBP14.11□□□□□ -0.15
UPF1-209ENST00000600310 FXYD7P58549 80 aa14.11□□□□□ -0.15
UPF1-209ENST00000600310 FAM74A1Q5RGS3 127 aa14.11□□□□□ -0.15
UPF1-209ENST00000600310 CSNK1G2-AS1Q8NCQ2 148 aa14.11□□□□□ -0.15
UPF1-209ENST00000600310 XCL2Q9UBD3 114 aa14.11□□□□□ -0.15
UPF1-209ENST00000600310 NPIPB6E9PJ23 425 aa14.1□□□□□ -0.15
UPF1-209ENST00000600310 SULT1A2P50226 295 aa14.1□□□□□ -0.15
UPF1-209ENST00000600310 IQCF2Q8IXL9 164 aa14.1□□□□□ -0.15
UPF1-209ENST00000600310 ARL6IP6Q8N6S5 226 aa14.1□□□□□ -0.15
UPF1-209ENST00000600310 RXFP4Q8TDU9 374 aa14.1□□□□□ -0.15
UPF1-209ENST00000600310 TMPRSS5Q9H3S3 457 aa14.1□□□□□ -0.15
UPF1-209ENST00000600310 BOLA1Q9Y3E2 137 aa14.1□□□□□ -0.15
UPF1-209ENST00000600310 BOLA2-SMG1P6H3BVE0 249 aa14.09□□□□□ -0.15
UPF1-209ENST00000600310 AMBPP02760 352 aa14.09□□□□□ -0.15
UPF1-209ENST00000600310 SFT2D1Q8WV19 159 aa14.09□□□□□ -0.15
UPF1-209ENST00000600310 PPP1R14DQ9NXH3 145 aa14.09□□□□□ -0.15
UPF1-209ENST00000600310 SPINK13Q1W4C9 94 aa14.08□□□□□ -0.16
UPF1-209ENST00000600310 C9orf47Q6ZRZ4 202 aa14.08□□□□□ -0.16
UPF1-209ENST00000600310 CMTM2Q8TAZ6 248 aa14.08□□□□□ -0.16
UPF1-209ENST00000600310 LINC00477Q96M19 166 aa14.08□□□□□ -0.16
UPF1-209ENST00000600310 ODF3Q96PU9 254 aa14.08□□□□□ -0.16
UPF1-209ENST00000600310 IGKV2-40A0A087WW87 121 aaPredicted RBP14.07□□□□□ -0.16
UPF1-209ENST00000600310 A0A1W2PRE2 83 aa14.07□□□□□ -0.16
UPF1-209ENST00000600310 RBAKDNA6NC62 111 aa14.07□□□□□ -0.16
UPF1-209ENST00000600310 DIRC3C9JPN6 131 aa14.07□□□□□ -0.16
UPF1-209ENST00000600310 IGKV2D-40P01614 121 aaPredicted RBP14.07□□□□□ -0.16
UPF1-209ENST00000600310 H2AFB1P0C5Y9 115 aa14.07□□□□□ -0.16
UPF1-209ENST00000600310 CT45A10P0DMU9 189 aa14.07□□□□□ -0.16
UPF1-209ENST00000600310 ERCC8Q13216 396 aa14.07□□□□□ -0.16
UPF1-209ENST00000600310 AGPAT4-IT1Q9H0P7 198 aa14.07□□□□□ -0.16
UPF1-209ENST00000600310 M0R2Z0 102 aa14.06□□□□□ -0.16
UPF1-209ENST00000600310 CRXO43186 299 aaPredicted RBP14.06□□□□□ -0.16
UPF1-209ENST00000600310 SUMO1P63165 101 aaKnown RBP14.06□□□□□ -0.16
UPF1-209ENST00000600310 C5orf17Q8NAS9 161 aa14.06□□□□□ -0.16
UPF1-209ENST00000600310 OR11H2Q8NH07 326 aa14.06□□□□□ -0.16
UPF1-209ENST00000600310 IGF2BP2-AS1Q96M15 143 aa14.06□□□□□ -0.16
UPF1-209ENST00000600310 RARRES2Q99969 163 aa14.06□□□□□ -0.16
UPF1-209ENST00000600310 VGLL1Q99990 258 aa14.06□□□□□ -0.16
UPF1-209ENST00000600310 ZNF705EA8MWA4 302 aaPredicted RBP14.05□□□□□ -0.16
UPF1-209ENST00000600310 GGTLC3B5MD39 225 aa14.05□□□□□ -0.16
UPF1-209ENST00000600310 SLC25A5P05141 298 aaKnown RBP14.05□□□□□ -0.16
UPF1-209ENST00000600310 TSPOP30536 169 aa14.05□□□□□ -0.16
UPF1-209ENST00000600310 CDKN1BP46527 198 aa14.05□□□□□ -0.16
UPF1-209ENST00000600310 YTHDF2Q9Y5A9 579 aaKnown RBP14.05□□□□□ -0.16
UPF1-209ENST00000600310 HUWE1Q7Z6Z7 4374 aaKnown RBP14.04□□□□□ -0.16
UPF1-209ENST00000600310 TRAV1-1A0A0B4J248 108 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms