RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 NACAE9PAV3 2078 aa8.61□□□□□ -1.03
LIG1-217ENST00000599165 MPDU1O75352 247 aa8.61□□□□□ -1.03
LIG1-217ENST00000599165 PYYP10082 97 aa8.61□□□□□ -1.03
LIG1-217ENST00000599165 CLINT1Q14677 625 aa8.61□□□□□ -1.03
LIG1-217ENST00000599165 OXA1LQ15070 435 aa8.61□□□□□ -1.03
LIG1-217ENST00000599165 LRRC20Q8TCA0 184 aa8.61□□□□□ -1.03
LIG1-217ENST00000599165 PFDN5Q99471 154 aa8.61□□□□□ -1.03
LIG1-217ENST00000599165 NIPSNAP3BQ9BS92 247 aa8.61□□□□□ -1.03
LIG1-217ENST00000599165 SLC25A2Q9BXI2 301 aa8.61□□□□□ -1.03
LIG1-217ENST00000599165 WDR61Q9GZS3 305 aaKnown RBP8.61□□□□□ -1.03
LIG1-217ENST00000599165 TMEM14CQ9P0S9 112 aa8.61□□□□□ -1.03
LIG1-217ENST00000599165 TRBV19A0A075B6N1 114 aa8.6□□□□□ -1.03
LIG1-217ENST00000599165 M0R3E3 92 aa8.6□□□□□ -1.03
LIG1-217ENST00000599165 ZNF253O75346 499 aa8.6□□□□□ -1.03
LIG1-217ENST00000599165 MPC2O95563 127 aa8.6□□□□□ -1.03
LIG1-217ENST00000599165 CT45A10P0DMU9 189 aa8.6□□□□□ -1.03
LIG1-217ENST00000599165 TSPOP30536 169 aa8.6□□□□□ -1.03
LIG1-217ENST00000599165 DEFA1P59665 94 aa8.6□□□□□ -1.03
LIG1-217ENST00000599165 DEFA3P59666 94 aa8.6□□□□□ -1.03
LIG1-217ENST00000599165 RHOBP62745 196 aa8.6□□□□□ -1.03
LIG1-217ENST00000599165 CYCSP99999 105 aaKnown RBP8.6□□□□□ -1.03
LIG1-217ENST00000599165 MIR17HGQ75NE6 70 aa8.6□□□□□ -1.03
LIG1-217ENST00000599165 SLC25A31Q9H0C2 315 aa8.6□□□□□ -1.03
LIG1-217ENST00000599165 NPIPB6E9PJ23 425 aa8.59□□□□□ -1.03
LIG1-217ENST00000599165 CDKN1BP46527 198 aa8.59□□□□□ -1.03
LIG1-217ENST00000599165 GUK1Q16774 197 aa8.59□□□□□ -1.03
LIG1-217ENST00000599165 GFI1BQ5VTD9 330 aa8.59□□□□□ -1.03
LIG1-217ENST00000599165 ZNF503Q96F45 646 aa8.59□□□□□ -1.03
LIG1-217ENST00000599165 TMEM208Q9BTX3 173 aa8.59□□□□□ -1.03
LIG1-217ENST00000599165 WFDC1Q9HC57 220 aa8.59□□□□□ -1.03
LIG1-217ENST00000599165 HSPB11Q9Y547 144 aa8.59□□□□□ -1.03
LIG1-217ENST00000599165 TEX48A0A1B0GUV7 120 aa8.58□□□□□ -1.04
LIG1-217ENST00000599165 SSNA1O43805 119 aa8.58□□□□□ -1.04
LIG1-217ENST00000599165 RLN2P04090 185 aa8.58□□□□□ -1.04
LIG1-217ENST00000599165 HIST1H1EP10412 219 aaKnown RBP8.58□□□□□ -1.04
LIG1-217ENST00000599165 FCN2Q15485 313 aa8.58□□□□□ -1.04
LIG1-217ENST00000599165 RNASE8Q8TDE3 154 aaKnown RBP8.58□□□□□ -1.04
LIG1-217ENST00000599165 FAM19A4Q96LR4 140 aa8.58□□□□□ -1.04
LIG1-217ENST00000599165 MBD2Q9UBB5 411 aa8.58□□□□□ -1.04
LIG1-217ENST00000599165 ALG5Q9Y673 324 aa8.58□□□□□ -1.04
LIG1-217ENST00000599165 HECTD4Q9Y4D8 3996 aa8.57□□□□□ -1.04
LIG1-217ENST00000599165 TAS2R60P59551 318 aa8.57□□□□□ -1.04
LIG1-217ENST00000599165 ERCC8Q13216 396 aa8.57□□□□□ -1.04
LIG1-217ENST00000599165 TMEM256Q8N2U0 113 aa8.57□□□□□ -1.04
LIG1-217ENST00000599165 EXOC3-AS1Q8N2X6 119 aa8.57□□□□□ -1.04
LIG1-217ENST00000599165 FXYD5Q96DB9 178 aa8.57□□□□□ -1.04
LIG1-217ENST00000599165 MRPL53Q96EL3 112 aaKnown RBP8.57□□□□□ -1.04
LIG1-217ENST00000599165 ODF3Q96PU9 254 aa8.57□□□□□ -1.04
LIG1-217ENST00000599165 LINC01587Q99440 93 aa8.57□□□□□ -1.04
LIG1-217ENST00000599165 ATP5SQ99766 215 aa8.57□□□□□ -1.04
LIG1-217ENST00000599165 NDUFAF3Q9BU61 184 aa8.57□□□□□ -1.04
LIG1-217ENST00000599165 LYRM9A8MSI8 78 aa8.56□□□□□ -1.04
LIG1-217ENST00000599165 EIF3GO75821 320 aaKnown RBP eCLIP8.56□□□□□ -1.04
LIG1-217ENST00000599165 RPL12P30050 165 aaKnown RBP8.56□□□□□ -1.04
LIG1-217ENST00000599165 PDE6HQ13956 83 aa8.56□□□□□ -1.04
LIG1-217ENST00000599165 TMEM88Q6PEY1 159 aa8.56□□□□□ -1.04
LIG1-217ENST00000599165 OR10J6PQ8NGY7 276 aa8.56□□□□□ -1.04
LIG1-217ENST00000599165 SMIM3Q9BZL3 60 aa8.56□□□□□ -1.04
LIG1-217ENST00000599165 DYNC1H1Q14204 4646 aaKnown RBP8.56□□□□□ -1.04
LIG1-217ENST00000599165 HTN3P15516 51 aa8.55□□□□□ -1.04
LIG1-217ENST00000599165 DAD1P61803 113 aa8.55□□□□□ -1.04
LIG1-217ENST00000599165 LINC00612Q8N6U2 182 aa8.55□□□□□ -1.04
LIG1-217ENST00000599165 BLNKQ8WV28 456 aa8.55□□□□□ -1.04
LIG1-217ENST00000599165 PHYHIPLQ96FC7 376 aa8.55□□□□□ -1.04
LIG1-217ENST00000599165 FAM210BQ96KR6 192 aa8.55□□□□□ -1.04
LIG1-217ENST00000599165 C20orf144Q9BQM9 153 aa8.55□□□□□ -1.04
LIG1-217ENST00000599165 AGPAT4-IT1Q9H0P7 198 aa8.55□□□□□ -1.04
LIG1-217ENST00000599165 FUT9Q9Y231 359 aa8.55□□□□□ -1.04
LIG1-217ENST00000599165 DNAH11Q96DT5 4516 aa8.55□□□□□ -1.04
LIG1-217ENST00000599165 IGKV2-40A0A087WW87 121 aaPredicted RBP8.54□□□□□ -1.04
LIG1-217ENST00000599165 KLLNB2CW77 178 aa8.54□□□□□ -1.04
LIG1-217ENST00000599165 H7BYZ3 331 aa8.54□□□□□ -1.04
LIG1-217ENST00000599165 J3KRW8 73 aa8.54□□□□□ -1.04
LIG1-217ENST00000599165 PTTG1O95997 202 aa8.54□□□□□ -1.04
LIG1-217ENST00000599165 IGKV2D-40P01614 121 aaPredicted RBP8.54□□□□□ -1.04
LIG1-217ENST00000599165 OR10J4P0C629 311 aa8.54□□□□□ -1.04
LIG1-217ENST00000599165 NBEAP1P0C6P0 100 aa8.54□□□□□ -1.04
LIG1-217ENST00000599165 DEFB130BP0DP73 79 aa8.54□□□□□ -1.04
LIG1-217ENST00000599165 DEFB130AP0DP74 79 aa8.54□□□□□ -1.04
LIG1-217ENST00000599165 HTN1P15515 57 aa8.54□□□□□ -1.04
LIG1-217ENST00000599165 ICAM4Q14773 271 aa8.54□□□□□ -1.04
LIG1-217ENST00000599165 Q5BKY6 102 aa8.54□□□□□ -1.04
LIG1-217ENST00000599165 PRR9Q5T870 116 aa8.54□□□□□ -1.04
LIG1-217ENST00000599165 Q6ZQT7 251 aa8.54□□□□□ -1.04
LIG1-217ENST00000599165 POM121L12Q8N7R1 296 aa8.54□□□□□ -1.04
LIG1-217ENST00000599165 TMEM263Q8WUH6 116 aaKnown RBP8.54□□□□□ -1.04
LIG1-217ENST00000599165 C16orf74Q96GX8 76 aa8.54□□□□□ -1.04
LIG1-217ENST00000599165 VGLL1Q99990 258 aa8.54□□□□□ -1.04
LIG1-217ENST00000599165 MRPL32Q9BYC8 188 aaKnown RBP8.54□□□□□ -1.04
LIG1-217ENST00000599165 OR51M1Q9H341 326 aa8.54□□□□□ -1.04
LIG1-217ENST00000599165 PPP1R14DQ9NXH3 145 aa8.54□□□□□ -1.04
LIG1-217ENST00000599165 KIAA1109Q2LD37 5005 aa8.53□□□□□ -1.04
LIG1-217ENST00000599165 TRAV12-3A0A0B4J271 114 aa8.53□□□□□ -1.04
LIG1-217ENST00000599165 ZNF324O75467 553 aaPredicted RBP8.53□□□□□ -1.04
LIG1-217ENST00000599165 PET100P0DJ07 73 aa8.53□□□□□ -1.04
LIG1-217ENST00000599165 CD300CQ08708 224 aa8.53□□□□□ -1.04
LIG1-217ENST00000599165 FFAR4Q5NUL3 377 aa8.53□□□□□ -1.04
LIG1-217ENST00000599165 C9orf47Q6ZRZ4 202 aa8.53□□□□□ -1.04
LIG1-217ENST00000599165 ZFAND2AQ8N6M9 145 aa8.53□□□□□ -1.04
LIG1-217ENST00000599165 PAXXQ9BUH6 204 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 95.9 ms