RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 HIST1H1AQ02539 215 aaPredicted RBP10.3□□□□□ -0.76
SHKBP1-217ENST00000598558 ZNF345Q14585 488 aa10.3□□□□□ -0.76
SHKBP1-217ENST00000598558 ZNF726P1Q15940 193 aa10.3□□□□□ -0.76
SHKBP1-217ENST00000598558 C1orf158Q8N1D5 194 aa10.3□□□□□ -0.76
SHKBP1-217ENST00000598558 ZNF705EA8MWA4 302 aaPredicted RBP10.29□□□□□ -0.76
SHKBP1-217ENST00000598558 M0R2Z0 102 aa10.29□□□□□ -0.76
SHKBP1-217ENST00000598558 DEFB4AO15263 64 aa10.29□□□□□ -0.76
SHKBP1-217ENST00000598558 JTBO76095 146 aa10.29□□□□□ -0.76
SHKBP1-217ENST00000598558 DUSP14O95147 198 aaKnown RBP10.29□□□□□ -0.76
SHKBP1-217ENST00000598558 ERCC8Q13216 396 aa10.29□□□□□ -0.76
SHKBP1-217ENST00000598558 PDE6HQ13956 83 aa10.29□□□□□ -0.76
SHKBP1-217ENST00000598558 ICAM4Q14773 271 aa10.29□□□□□ -0.76
SHKBP1-217ENST00000598558 KIR3DS1Q14943 382 aa10.29□□□□□ -0.76
SHKBP1-217ENST00000598558 LGALSLQ3ZCW2 172 aaPredicted RBP10.29□□□□□ -0.76
SHKBP1-217ENST00000598558 RAB24Q969Q5 203 aa10.29□□□□□ -0.76
SHKBP1-217ENST00000598558 GNPNAT1Q96EK6 184 aaPredicted RBP10.29□□□□□ -0.76
SHKBP1-217ENST00000598558 ARPC5LQ9BPX5 153 aa10.29□□□□□ -0.76
SHKBP1-217ENST00000598558 DNAH7Q8WXX0 4024 aa10.29□□□□□ -0.76
SHKBP1-217ENST00000598558 A0A1W2PPV4 95 aa10.28□□□□□ -0.76
SHKBP1-217ENST00000598558 STAG3L2P0CL84 134 aa10.28□□□□□ -0.76
SHKBP1-217ENST00000598558 STAG3L3P0CL85 134 aa10.28□□□□□ -0.76
SHKBP1-217ENST00000598558 RBMY1A1P0DJD3 496 aaKnown RBP10.28□□□□□ -0.76
SHKBP1-217ENST00000598558 RBMY1CP0DJD4 496 aa10.28□□□□□ -0.76
SHKBP1-217ENST00000598558 CDC34P49427 236 aaPredicted RBP10.28□□□□□ -0.76
SHKBP1-217ENST00000598558 NUTF2P61970 127 aaKnown RBP10.28□□□□□ -0.76
SHKBP1-217ENST00000598558 RBMY1FQ15415 496 aaKnown RBP10.28□□□□□ -0.76
SHKBP1-217ENST00000598558 SPINK13Q1W4C9 94 aa10.28□□□□□ -0.76
SHKBP1-217ENST00000598558 TMUB2Q71RG4 321 aa10.28□□□□□ -0.76
SHKBP1-217ENST00000598558 Q8NAQ8 132 aa10.28□□□□□ -0.76
SHKBP1-217ENST00000598558 A0A0D9SG52 128 aa10.27□□□□□ -0.77
SHKBP1-217ENST00000598558 BCL2L11O43521 198 aa10.27□□□□□ -0.77
SHKBP1-217ENST00000598558 PRM2P04554 102 aa10.27□□□□□ -0.77
SHKBP1-217ENST00000598558 CT45A10P0DMU9 189 aa10.27□□□□□ -0.77
SHKBP1-217ENST00000598558 RANP62826 216 aaKnown RBP10.27□□□□□ -0.77
SHKBP1-217ENST00000598558 UBE2L3P68036 154 aaKnown RBP10.27□□□□□ -0.77
SHKBP1-217ENST00000598558 KHDC3LQ587J8 217 aa10.27□□□□□ -0.77
SHKBP1-217ENST00000598558 TMEM41BQ5BJD5 291 aa10.27□□□□□ -0.77
SHKBP1-217ENST00000598558 ZNF705AQ6ZN79 300 aaPredicted RBP10.27□□□□□ -0.77
SHKBP1-217ENST00000598558 MUC7Q8TAX7 377 aa10.27□□□□□ -0.77
SHKBP1-217ENST00000598558 TRAV12-2A0A075B6T6 113 aa10.26□□□□□ -0.77
SHKBP1-217ENST00000598558 IGHV4-28A0A0C4DH34 117 aa10.26□□□□□ -0.77
SHKBP1-217ENST00000598558 NPIPB6E9PJ23 425 aa10.26□□□□□ -0.77
SHKBP1-217ENST00000598558 C1QBP02746 253 aa10.26□□□□□ -0.77
SHKBP1-217ENST00000598558 ARL14EPLP0DKL9 152 aa10.26□□□□□ -0.77
SHKBP1-217ENST00000598558 TAS2R45P59539 299 aa10.26□□□□□ -0.77
SHKBP1-217ENST00000598558 BAP18Q8IXM2 172 aa10.26□□□□□ -0.77
SHKBP1-217ENST00000598558 SUN5Q8TC36 379 aa10.26□□□□□ -0.77
SHKBP1-217ENST00000598558 MRPL53Q96EL3 112 aaKnown RBP10.26□□□□□ -0.77
SHKBP1-217ENST00000598558 C1QTNF4Q9BXJ3 329 aa10.26□□□□□ -0.77
SHKBP1-217ENST00000598558 AGPAT4-IT1Q9H0P7 198 aa10.26□□□□□ -0.77
SHKBP1-217ENST00000598558 Q9H3A6 140 aa10.26□□□□□ -0.77
SHKBP1-217ENST00000598558 IGKV2-40A0A087WW87 121 aaPredicted RBP10.25□□□□□ -0.77
SHKBP1-217ENST00000598558 BOLA2-SMG1P6H3BVE0 249 aa10.25□□□□□ -0.77
SHKBP1-217ENST00000598558 IGKV2D-40P01614 121 aaPredicted RBP10.25□□□□□ -0.77
SHKBP1-217ENST00000598558 MBP02144 154 aa10.25□□□□□ -0.77
SHKBP1-217ENST00000598558 ZFAND6Q6FIF0 208 aa10.25□□□□□ -0.77
SHKBP1-217ENST00000598558 PQLC2Q6ZP29 291 aa10.25□□□□□ -0.77
SHKBP1-217ENST00000598558 AKAP14Q86UN6 197 aa10.25□□□□□ -0.77
SHKBP1-217ENST00000598558 IGF2BP2-AS1Q96M15 143 aa10.25□□□□□ -0.77
SHKBP1-217ENST00000598558 VGLL1Q99990 258 aa10.25□□□□□ -0.77
SHKBP1-217ENST00000598558 ZNF471Q9BX82 626 aaPredicted RBP10.25□□□□□ -0.77
SHKBP1-217ENST00000598558 ACTR3CQ9C0K3 210 aaPredicted RBP10.25□□□□□ -0.77
SHKBP1-217ENST00000598558 TMPRSS5Q9H3S3 457 aa10.25□□□□□ -0.77
SHKBP1-217ENST00000598558 PRELID1Q9Y255 219 aa10.25□□□□□ -0.77
SHKBP1-217ENST00000598558 IGHV3OR16-12A0A075B7B8 117 aa10.24□□□□□ -0.77
SHKBP1-217ENST00000598558 GCHFRP30047 84 aa10.24□□□□□ -0.77
SHKBP1-217ENST00000598558 FHITP49789 147 aa10.24□□□□□ -0.77
SHKBP1-217ENST00000598558 OR10J6PQ8NGY7 276 aa10.24□□□□□ -0.77
SHKBP1-217ENST00000598558 IL17DQ8TAD2 202 aa10.24□□□□□ -0.77
SHKBP1-217ENST00000598558 KANTRA0A1W2PQU2 76 aa10.23□□□□□ -0.77
SHKBP1-217ENST00000598558 PGPA6NDG6 321 aa10.23□□□□□ -0.77
SHKBP1-217ENST00000598558 LYPD1Q8N2G4 141 aa10.23□□□□□ -0.77
SHKBP1-217ENST00000598558 FAM19A4Q96LR4 140 aa10.23□□□□□ -0.77
SHKBP1-217ENST00000598558 AAMDCQ9H7C9 122 aa10.23□□□□□ -0.77
SHKBP1-217ENST00000598558 CTXND1A0A1B0GTU2 59 aa10.22□□□□□ -0.77
SHKBP1-217ENST00000598558 SEC11BP0C7V7 166 aa10.22□□□□□ -0.77
SHKBP1-217ENST00000598558 MIFP14174 115 aa10.22□□□□□ -0.77
SHKBP1-217ENST00000598558 FGF8P55075 233 aaPredicted RBP10.22□□□□□ -0.77
SHKBP1-217ENST00000598558 AKR1C8PQ5T2L2 129 aa10.22□□□□□ -0.77
SHKBP1-217ENST00000598558 CASC10Q5T4H9 136 aa10.22□□□□□ -0.77
SHKBP1-217ENST00000598558 C9orf47Q6ZRZ4 202 aa10.22□□□□□ -0.77
SHKBP1-217ENST00000598558 C9orf62Q8N4C0 152 aa10.22□□□□□ -0.77
SHKBP1-217ENST00000598558 HYLS1Q96M11 299 aa10.22□□□□□ -0.77
SHKBP1-217ENST00000598558 NEU1Q99519 415 aa10.22□□□□□ -0.77
SHKBP1-217ENST00000598558 C11orf68Q9H3H3 251 aaKnown RBP10.22□□□□□ -0.77
SHKBP1-217ENST00000598558 OTORQ9NRC9 128 aa10.22□□□□□ -0.77
SHKBP1-217ENST00000598558 STARD9Q9P2P6 4700 aa10.22□□□□□ -0.77
SHKBP1-217ENST00000598558 ZNF705GA8MUZ8 300 aaPredicted RBP10.21□□□□□ -0.77
SHKBP1-217ENST00000598558 DIRC3C9JPN6 131 aa10.21□□□□□ -0.77
SHKBP1-217ENST00000598558 C3orf84H3BNL1 204 aa10.21□□□□□ -0.77
SHKBP1-217ENST00000598558 J3KRW8 73 aa10.21□□□□□ -0.77
SHKBP1-217ENST00000598558 PFDN1O60925 122 aa10.21□□□□□ -0.77
SHKBP1-217ENST00000598558 CXorf1O96002 111 aa10.21□□□□□ -0.77
SHKBP1-217ENST00000598558 AMBPP02760 352 aa10.21□□□□□ -0.77
SHKBP1-217ENST00000598558 AZU1P20160 251 aa10.21□□□□□ -0.77
SHKBP1-217ENST00000598558 CDKN1BP46527 198 aa10.21□□□□□ -0.77
SHKBP1-217ENST00000598558 NANOS2P60321 138 aaKnown RBP10.21□□□□□ -0.77
SHKBP1-217ENST00000598558 GNG5P63218 68 aa10.21□□□□□ -0.77
SHKBP1-217ENST00000598558 GFI1BQ5VTD9 330 aa10.21□□□□□ -0.77
SHKBP1-217ENST00000598558 Q6ZQT7 251 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms