RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 FFAR4Q5NUL3 377 aa11.58□□□□□ -0.56
TRIM28-213ENST00000598355 BAP18Q8IXM2 172 aa11.58□□□□□ -0.56
TRIM28-213ENST00000598355 FXYD5Q96DB9 178 aa11.58□□□□□ -0.56
TRIM28-213ENST00000598355 ZNF503Q96F45 646 aa11.58□□□□□ -0.56
TRIM28-213ENST00000598355 ODF3Q96PU9 254 aa11.58□□□□□ -0.56
TRIM28-213ENST00000598355 RFNGQ9Y644 331 aa11.58□□□□□ -0.56
TRIM28-213ENST00000598355 NPIPB6E9PJ23 425 aa11.57□□□□□ -0.56
TRIM28-213ENST00000598355 ZNF266Q14584 549 aa11.57□□□□□ -0.56
TRIM28-213ENST00000598355 SCGB1C1Q8TD33 95 aa11.57□□□□□ -0.56
TRIM28-213ENST00000598355 PRELID1Q9Y255 219 aa11.57□□□□□ -0.56
TRIM28-213ENST00000598355 KLK5Q9Y337 293 aaPredicted RBP11.57□□□□□ -0.56
TRIM28-213ENST00000598355 C11orf94C9JXX5 98 aa11.56□□□□□ -0.56
TRIM28-213ENST00000598355 M0R3E3 92 aa11.56□□□□□ -0.56
TRIM28-213ENST00000598355 JTBO76095 146 aa11.56□□□□□ -0.56
TRIM28-213ENST00000598355 CDKN1BP46527 198 aa11.56□□□□□ -0.56
TRIM28-213ENST00000598355 OR2G3Q8NGZ4 309 aa11.56□□□□□ -0.56
TRIM28-213ENST00000598355 OR51M1Q9H341 326 aa11.56□□□□□ -0.56
TRIM28-213ENST00000598355 TNFSF18Q9UNG2 199 aa11.56□□□□□ -0.56
TRIM28-213ENST00000598355 IGHV3OR16-12A0A075B7B8 117 aa11.55□□□□□ -0.56
TRIM28-213ENST00000598355 HBE1P02100 147 aa11.55□□□□□ -0.56
TRIM28-213ENST00000598355 NBEAP1P0C6P0 100 aa11.55□□□□□ -0.56
TRIM28-213ENST00000598355 PRB4P10163 310 aaPredicted RBP11.55□□□□□ -0.56
TRIM28-213ENST00000598355 M6PRP20645 277 aa11.55□□□□□ -0.56
TRIM28-213ENST00000598355 TSPOP30536 169 aa11.55□□□□□ -0.56
TRIM28-213ENST00000598355 RHOBP62745 196 aa11.55□□□□□ -0.56
TRIM28-213ENST00000598355 Q6ZTC4 211 aa11.55□□□□□ -0.56
TRIM28-213ENST00000598355 TMEM256Q8N2U0 113 aa11.55□□□□□ -0.56
TRIM28-213ENST00000598355 OR2T35Q8NGX2 323 aa11.55□□□□□ -0.56
TRIM28-213ENST00000598355 OR10J6PQ8NGY7 276 aa11.55□□□□□ -0.56
TRIM28-213ENST00000598355 LINC00476Q8WZB0 136 aa11.55□□□□□ -0.56
TRIM28-213ENST00000598355 PSMG3Q9BT73 122 aaPredicted RBP11.55□□□□□ -0.56
TRIM28-213ENST00000598355 PAXXQ9BUH6 204 aa11.55□□□□□ -0.56
TRIM28-213ENST00000598355 TRAV12-2A0A075B6T6 113 aa11.54□□□□□ -0.56
TRIM28-213ENST00000598355 TEX48A0A1B0GUV7 120 aa11.54□□□□□ -0.56
TRIM28-213ENST00000598355 RRN3P1Q2M238 152 aa11.54□□□□□ -0.56
TRIM28-213ENST00000598355 C12orf74Q32Q52 190 aa11.54□□□□□ -0.56
TRIM28-213ENST00000598355 KHDC3LQ587J8 217 aa11.54□□□□□ -0.56
TRIM28-213ENST00000598355 RNF141Q8WVD5 230 aa11.54□□□□□ -0.56
TRIM28-213ENST00000598355 PHYHIPLQ96FC7 376 aa11.54□□□□□ -0.56
TRIM28-213ENST00000598355 C20orf144Q9BQM9 153 aa11.54□□□□□ -0.56
TRIM28-213ENST00000598355 DKK2Q9UBU2 259 aa11.54□□□□□ -0.56
TRIM28-213ENST00000598355 LOC102723971A0A1B0GUV8 181 aa11.53□□□□□ -0.56
TRIM28-213ENST00000598355 PLAC8L1A1L4L8 177 aa11.53□□□□□ -0.56
TRIM28-213ENST00000598355 OR7C2O60412 319 aa11.53□□□□□ -0.56
TRIM28-213ENST00000598355 OR10J4P0C629 311 aa11.53□□□□□ -0.56
TRIM28-213ENST00000598355 TAS2R45P59539 299 aa11.53□□□□□ -0.56
TRIM28-213ENST00000598355 ACOT6Q3I5F7 207 aaPredicted RBP11.53□□□□□ -0.56
TRIM28-213ENST00000598355 EXOC3-AS1Q8N2X6 119 aa11.53□□□□□ -0.56
TRIM28-213ENST00000598355 RPP25LQ8N5L8 163 aaKnown RBP11.53□□□□□ -0.56
TRIM28-213ENST00000598355 BLNKQ8WV28 456 aa11.53□□□□□ -0.56
TRIM28-213ENST00000598355 FAM19A4Q96LR4 140 aa11.53□□□□□ -0.56
TRIM28-213ENST00000598355 AAMDCQ9H7C9 122 aa11.53□□□□□ -0.56
TRIM28-213ENST00000598355 FXYD6-FXYD2A0A087WZ82 144 aa11.52□□□□□ -0.57
TRIM28-213ENST00000598355 TRAV10A0A0B4J240 114 aa11.52□□□□□ -0.57
TRIM28-213ENST00000598355 CT45A10P0DMU9 189 aa11.52□□□□□ -0.57
TRIM28-213ENST00000598355 ATP6V0CP27449 155 aa11.52□□□□□ -0.57
TRIM28-213ENST00000598355 TCTAP57738 103 aa11.52□□□□□ -0.57
TRIM28-213ENST00000598355 RAB2AP61019 212 aa11.52□□□□□ -0.57
TRIM28-213ENST00000598355 UBE2L3P68036 154 aaKnown RBP11.52□□□□□ -0.57
TRIM28-213ENST00000598355 ICAM4Q14773 271 aa11.52□□□□□ -0.57
TRIM28-213ENST00000598355 KIR3DS1Q14943 382 aa11.52□□□□□ -0.57
TRIM28-213ENST00000598355 GFI1BQ5VTD9 330 aa11.52□□□□□ -0.57
TRIM28-213ENST00000598355 LYPD1Q8N2G4 141 aa11.52□□□□□ -0.57
TRIM28-213ENST00000598355 HYDINQ4G0P3 5121 aa11.52□□□□□ -0.57
TRIM28-213ENST00000598355 SPART-AS1P0CW21 52 aa11.51□□□□□ -0.57
TRIM28-213ENST00000598355 FAM222AQ5U5X8 452 aa11.51□□□□□ -0.57
TRIM28-213ENST00000598355 PQLC2Q6ZP29 291 aa11.51□□□□□ -0.57
TRIM28-213ENST00000598355 C9orf47Q6ZRZ4 202 aa11.51□□□□□ -0.57
TRIM28-213ENST00000598355 HSD17B11Q8NBQ5 300 aa11.51□□□□□ -0.57
TRIM28-213ENST00000598355 INO80EQ8NBZ0 244 aaPredicted RBP11.51□□□□□ -0.57
TRIM28-213ENST00000598355 C2CD4CQ8TF44 421 aa11.51□□□□□ -0.57
TRIM28-213ENST00000598355 TMEM208Q9BTX3 173 aa11.51□□□□□ -0.57
TRIM28-213ENST00000598355 YTHDF2Q9Y5A9 579 aaKnown RBP11.51□□□□□ -0.57
TRIM28-213ENST00000598355 KLLNB2CW77 178 aa11.5□□□□□ -0.57
TRIM28-213ENST00000598355 CRISP2P16562 243 aa11.5□□□□□ -0.57
TRIM28-213ENST00000598355 TAS2R60P59551 318 aa11.5□□□□□ -0.57
TRIM28-213ENST00000598355 SERF2P84101 59 aa11.5□□□□□ -0.57
TRIM28-213ENST00000598355 LINC00477Q96M19 166 aa11.5□□□□□ -0.57
TRIM28-213ENST00000598355 PPP1R14DQ9NXH3 145 aa11.5□□□□□ -0.57
TRIM28-213ENST00000598355 KMT2AQ03164 3969 aa11.49□□□□□ -0.57
TRIM28-213ENST00000598355 ZNF705GA8MUZ8 300 aaPredicted RBP11.49□□□□□ -0.57
TRIM28-213ENST00000598355 H7BYZ3 331 aa11.49□□□□□ -0.57
TRIM28-213ENST00000598355 PRM2P04554 102 aa11.49□□□□□ -0.57
TRIM28-213ENST00000598355 LEPP41159 167 aa11.49□□□□□ -0.57
TRIM28-213ENST00000598355 RPL7L1Q6DKI1 246 aaKnown RBP11.49□□□□□ -0.57
TRIM28-213ENST00000598355 RNASE8Q8TDE3 154 aaKnown RBP11.49□□□□□ -0.57
TRIM28-213ENST00000598355 AGPAT4-IT1Q9H0P7 198 aa11.49□□□□□ -0.57
TRIM28-213ENST00000598355 SH3BGRL3Q9H299 93 aa11.49□□□□□ -0.57
TRIM28-213ENST00000598355 Q9H3A6 140 aa11.49□□□□□ -0.57
TRIM28-213ENST00000598355 IGKV2-40A0A087WW87 121 aaPredicted RBP11.48□□□□□ -0.57
TRIM28-213ENST00000598355 TRBV7-9A0A0J9YWB2 115 aa11.48□□□□□ -0.57
TRIM28-213ENST00000598355 RBAKDNA6NC62 111 aa11.48□□□□□ -0.57
TRIM28-213ENST00000598355 IGKV2D-40P01614 121 aaPredicted RBP11.48□□□□□ -0.57
TRIM28-213ENST00000598355 SLC25A5P05141 298 aaKnown RBP11.48□□□□□ -0.57
TRIM28-213ENST00000598355 NMBP08949 121 aa11.48□□□□□ -0.57
TRIM28-213ENST00000598355 STAG3L2P0CL84 134 aa11.48□□□□□ -0.57
TRIM28-213ENST00000598355 STAG3L3P0CL85 134 aa11.48□□□□□ -0.57
TRIM28-213ENST00000598355 AZU1P20160 251 aa11.48□□□□□ -0.57
TRIM28-213ENST00000598355 EMP1P54849 157 aa11.48□□□□□ -0.57
TRIM28-213ENST00000598355 ERCC8Q13216 396 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms