RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 CCDC28AQ8IWP9 274 aa7.04□□□□□ -1.28
TRIM28-208ENST00000597172 EXOC3-AS1Q8N2X6 119 aa7.04□□□□□ -1.28
TRIM28-208ENST00000597172 FAM24BQ8N5W8 94 aa7.04□□□□□ -1.28
TRIM28-208ENST00000597172 C20orf173Q96LM9 149 aa7.04□□□□□ -1.28
TRIM28-208ENST00000597172 NRN1Q9NPD7 142 aa7.04□□□□□ -1.28
TRIM28-208ENST00000597172 ZNF331Q9NQX6 463 aaPredicted RBP7.04□□□□□ -1.28
TRIM28-208ENST00000597172 GNG13Q9P2W3 67 aa7.04□□□□□ -1.28
TRIM28-208ENST00000597172 SORL1Q92673 2214 aa7.03□□□□□ -1.28
TRIM28-208ENST00000597172 LOC102723971A0A1B0GUV8 181 aa7.03□□□□□ -1.28
TRIM28-208ENST00000597172 LINC00862A6NCI5 91 aa7.03□□□□□ -1.28
TRIM28-208ENST00000597172 PGPA6NDG6 321 aa7.03□□□□□ -1.28
TRIM28-208ENST00000597172 RBFOX3A6NFN3 312 aa7.03□□□□□ -1.28
TRIM28-208ENST00000597172 K7EQG2 157 aa7.03□□□□□ -1.28
TRIM28-208ENST00000597172 TFPI2P48307 235 aa7.03□□□□□ -1.28
TRIM28-208ENST00000597172 MEOX2P50222 304 aa7.03□□□□□ -1.28
TRIM28-208ENST00000597172 INSL3P51460 131 aa7.03□□□□□ -1.28
TRIM28-208ENST00000597172 SUMO1P63165 101 aaKnown RBP7.03□□□□□ -1.28
TRIM28-208ENST00000597172 SRSF3P84103 164 aaKnown RBP7.03□□□□□ -1.28
TRIM28-208ENST00000597172 PDE6HQ13956 83 aa7.03□□□□□ -1.28
TRIM28-208ENST00000597172 HAGHQ16775 308 aa7.03□□□□□ -1.28
TRIM28-208ENST00000597172 C9orf66Q5T8R8 295 aa7.03□□□□□ -1.28
TRIM28-208ENST00000597172 RBPMS2Q6ZRY4 209 aaKnown RBP7.03□□□□□ -1.28
TRIM28-208ENST00000597172 LYPD1Q8N2G4 141 aa7.03□□□□□ -1.28
TRIM28-208ENST00000597172 OR2K2Q8NGT1 345 aa7.03□□□□□ -1.28
TRIM28-208ENST00000597172 FAM210AQ96ND0 272 aa7.03□□□□□ -1.28
TRIM28-208ENST00000597172 MCRIP2Q9BUT9 160 aaKnown RBP7.03□□□□□ -1.28
TRIM28-208ENST00000597172 Q9H3A6 140 aa7.03□□□□□ -1.28
TRIM28-208ENST00000597172 MED9Q9NWA0 146 aa7.03□□□□□ -1.28
TRIM28-208ENST00000597172 ZMAT5Q9UDW3 170 aaKnown RBP7.03□□□□□ -1.28
TRIM28-208ENST00000597172 ZNF256Q9Y2P7 627 aaPredicted RBP7.03□□□□□ -1.28
TRIM28-208ENST00000597172 TRAV2A0A0B4J234 112 aa7.02□□□□□ -1.29
TRIM28-208ENST00000597172 ZNF705FA8MVS1 300 aaPredicted RBP7.02□□□□□ -1.29
TRIM28-208ENST00000597172 GGTLC3B5MD39 225 aa7.02□□□□□ -1.29
TRIM28-208ENST00000597172 C9JQL5 133 aa7.02□□□□□ -1.29
TRIM28-208ENST00000597172 DNASE2O00115 360 aaPredicted RBP7.02□□□□□ -1.29
TRIM28-208ENST00000597172 PRB4P10163 310 aaPredicted RBP7.02□□□□□ -1.29
TRIM28-208ENST00000597172 BCL2P10415 239 aa7.02□□□□□ -1.29
TRIM28-208ENST00000597172 ATP5G3P48201 142 aa7.02□□□□□ -1.29
TRIM28-208ENST00000597172 PPT1P50897 306 aa7.02□□□□□ -1.29
TRIM28-208ENST00000597172 CD81P60033 236 aa7.02□□□□□ -1.29
TRIM28-208ENST00000597172 PAFAH1B2P68402 229 aa7.02□□□□□ -1.29
TRIM28-208ENST00000597172 PSG9Q00887 426 aa7.02□□□□□ -1.29
TRIM28-208ENST00000597172 ICAM4Q14773 271 aa7.02□□□□□ -1.29
TRIM28-208ENST00000597172 ZNF506Q5JVG8 444 aa7.02□□□□□ -1.29
TRIM28-208ENST00000597172 CST9LP1Q5W188 147 aa7.02□□□□□ -1.29
TRIM28-208ENST00000597172 RNF182Q8N6D2 247 aa7.02□□□□□ -1.29
TRIM28-208ENST00000597172 C16orf92Q96LL3 132 aa7.02□□□□□ -1.29
TRIM28-208ENST00000597172 MANBALQ9NQG1 85 aa7.02□□□□□ -1.29
TRIM28-208ENST00000597172 OTORQ9NRC9 128 aa7.02□□□□□ -1.29
TRIM28-208ENST00000597172 ARL2-SNX15V9GYD0 113 aa7.02□□□□□ -1.29
TRIM28-208ENST00000597172 KMT2AQ03164 3969 aa7.01□□□□□ -1.29
TRIM28-208ENST00000597172 PRAC2D3DTV9 90 aa7.01□□□□□ -1.29
TRIM28-208ENST00000597172 M0R3E3 92 aa7.01□□□□□ -1.29
TRIM28-208ENST00000597172 ISLRO14498 428 aa7.01□□□□□ -1.29
TRIM28-208ENST00000597172 PSG3Q16557 428 aa7.01□□□□□ -1.29
TRIM28-208ENST00000597172 GUCA2BQ16661 112 aa7.01□□□□□ -1.29
TRIM28-208ENST00000597172 TOR2AQ5JU69 321 aa7.01□□□□□ -1.29
TRIM28-208ENST00000597172 LCN12Q6JVE5 192 aa7.01□□□□□ -1.29
TRIM28-208ENST00000597172 RXFP4Q8TDU9 374 aa7.01□□□□□ -1.29
TRIM28-208ENST00000597172 SPAG8Q99932 426 aaPredicted RBP7.01□□□□□ -1.29
TRIM28-208ENST00000597172 SLC50A1Q9BRV3 221 aa7.01□□□□□ -1.29
TRIM28-208ENST00000597172 VAX2Q9UIW0 290 aa7.01□□□□□ -1.29
TRIM28-208ENST00000597172 RAB19A4D1S5 217 aa7□□□□□ -1.29
TRIM28-208ENST00000597172 C11orf94C9JXX5 98 aa7□□□□□ -1.29
TRIM28-208ENST00000597172 IFNA1P01562 189 aa7□□□□□ -1.29
TRIM28-208ENST00000597172 DEFB1P60022 68 aa7□□□□□ -1.29
TRIM28-208ENST00000597172 GNG5P63218 68 aa7□□□□□ -1.29
TRIM28-208ENST00000597172 MEF2BQ02080 365 aaPredicted RBP7□□□□□ -1.29
TRIM28-208ENST00000597172 NKX6-2Q9C056 277 aaPredicted RBP7□□□□□ -1.29
TRIM28-208ENST00000597172 EIF5A2Q9GZV4 153 aaKnown RBP7□□□□□ -1.29
TRIM28-208ENST00000597172 EPDR1Q9UM22 224 aa7□□□□□ -1.29
TRIM28-208ENST00000597172 OR4C46A6NHA9 309 aa6.99□□□□□ -1.29
TRIM28-208ENST00000597172 DIRC3C9JPN6 131 aa6.99□□□□□ -1.29
TRIM28-208ENST00000597172 SLC25A5P05141 298 aaKnown RBP6.99□□□□□ -1.29
TRIM28-208ENST00000597172 SRP19P09132 144 aaKnown RBP6.99□□□□□ -1.29
TRIM28-208ENST00000597172 CD7P09564 240 aa6.99□□□□□ -1.29
TRIM28-208ENST00000597172 ZNF688P0C7X2 276 aa6.99□□□□□ -1.29
TRIM28-208ENST00000597172 TAGLN2P37802 199 aaKnown RBP6.99□□□□□ -1.29
TRIM28-208ENST00000597172 ID1P41134 155 aa6.99□□□□□ -1.29
TRIM28-208ENST00000597172 SAMD13Q5VXD3 122 aa6.99□□□□□ -1.29
TRIM28-208ENST00000597172 COMMD7Q86VX2 200 aa6.99□□□□□ -1.29
TRIM28-208ENST00000597172 SBSPONQ8IVN8 264 aa6.99□□□□□ -1.29
TRIM28-208ENST00000597172 SLC7A5P1Q8MH63 180 aa6.99□□□□□ -1.29
TRIM28-208ENST00000597172 MRPL53Q96EL3 112 aaKnown RBP6.99□□□□□ -1.29
TRIM28-208ENST00000597172 LINC00479Q96M42 142 aa6.99□□□□□ -1.29
TRIM28-208ENST00000597172 LINC00052Q96N35 136 aa6.99□□□□□ -1.29
TRIM28-208ENST00000597172 TXNDC17Q9BRA2 123 aa6.99□□□□□ -1.29
TRIM28-208ENST00000597172 AAMDCQ9H7C9 122 aa6.99□□□□□ -1.29
TRIM28-208ENST00000597172 C19orf73Q9NVV2 129 aa6.99□□□□□ -1.29
TRIM28-208ENST00000597172 CLEC5AQ9NY25 188 aa6.99□□□□□ -1.29
TRIM28-208ENST00000597172 PRELID1Q9Y255 219 aa6.99□□□□□ -1.29
TRIM28-208ENST00000597172 SCO2A0A1W2PP80 73 aa6.98□□□□□ -1.29
TRIM28-208ENST00000597172 F6UB75 175 aa6.98□□□□□ -1.29
TRIM28-208ENST00000597172 NDUFS6O75380 124 aaKnown RBP6.98□□□□□ -1.29
TRIM28-208ENST00000597172 TCRAP04437 139 aa6.98□□□□□ -1.29
TRIM28-208ENST00000597172 DEFB131AP59861 70 aa6.98□□□□□ -1.29
TRIM28-208ENST00000597172 SNRPD3P62318 126 aaKnown RBP6.98□□□□□ -1.29
TRIM28-208ENST00000597172 PEA15Q15121 130 aa6.98□□□□□ -1.29
TRIM28-208ENST00000597172 ZNF124Q15973 351 aa6.98□□□□□ -1.29
TRIM28-208ENST00000597172 ODF3L2Q3SX64 289 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms