RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 TMEM14CQ9P0S9 112 aa10.82□□□□□ -0.68
TRIM28-205ENST00000595028 MBD2Q9UBB5 411 aa10.82□□□□□ -0.68
TRIM28-205ENST00000595028 HSPB11Q9Y547 144 aa10.82□□□□□ -0.68
TRIM28-205ENST00000595028 TEX48A0A1B0GUV7 120 aa10.81□□□□□ -0.68
TRIM28-205ENST00000595028 ZNF253O75346 499 aa10.81□□□□□ -0.68
TRIM28-205ENST00000595028 RHOBP62745 196 aa10.81□□□□□ -0.68
TRIM28-205ENST00000595028 RRN3P1Q2M238 152 aa10.81□□□□□ -0.68
TRIM28-205ENST00000595028 ZNF586Q9NXT0 402 aa10.81□□□□□ -0.68
TRIM28-205ENST00000595028 TRAV12-2A0A075B6T6 113 aa10.8□□□□□ -0.68
TRIM28-205ENST00000595028 IGLL5B9A064 214 aa10.8□□□□□ -0.68
TRIM28-205ENST00000595028 PRAC2D3DTV9 90 aa10.8□□□□□ -0.68
TRIM28-205ENST00000595028 SPART-AS1P0CW21 52 aa10.8□□□□□ -0.68
TRIM28-205ENST00000595028 LGALS9CQ6DKI2 356 aa10.8□□□□□ -0.68
TRIM28-205ENST00000595028 PPP1R14DQ9NXH3 145 aa10.8□□□□□ -0.68
TRIM28-205ENST00000595028 DKK2Q9UBU2 259 aa10.8□□□□□ -0.68
TRIM28-205ENST00000595028 APLNQ9ULZ1 77 aa10.8□□□□□ -0.68
TRIM28-205ENST00000595028 YTHDF2Q9Y5A9 579 aaKnown RBP10.8□□□□□ -0.68
TRIM28-205ENST00000595028 TRBV19A0A075B6N1 114 aa10.79□□□□□ -0.68
TRIM28-205ENST00000595028 DEFB131BA0A096LNP1 70 aa10.79□□□□□ -0.68
TRIM28-205ENST00000595028 C17orf112F2Z3M2 114 aa10.79□□□□□ -0.68
TRIM28-205ENST00000595028 PYYP10082 97 aa10.79□□□□□ -0.68
TRIM28-205ENST00000595028 HIST1H1EP10412 219 aaKnown RBP10.79□□□□□ -0.68
TRIM28-205ENST00000595028 RPL12P30050 165 aaKnown RBP10.79□□□□□ -0.68
TRIM28-205ENST00000595028 PDE6HQ13956 83 aa10.79□□□□□ -0.68
TRIM28-205ENST00000595028 FAM222AQ5U5X8 452 aa10.79□□□□□ -0.68
TRIM28-205ENST00000595028 SLC25A2Q9BXI2 301 aa10.79□□□□□ -0.68
TRIM28-205ENST00000595028 IGHV4-4A0A075B6R2 117 aa10.78□□□□□ -0.68
TRIM28-205ENST00000595028 CDKN1BP46527 198 aa10.78□□□□□ -0.68
TRIM28-205ENST00000595028 MIR17HGQ75NE6 70 aa10.78□□□□□ -0.68
TRIM28-205ENST00000595028 OR10J6PQ8NGY7 276 aa10.78□□□□□ -0.68
TRIM28-205ENST00000595028 MRPL53Q96EL3 112 aaKnown RBP10.78□□□□□ -0.68
TRIM28-205ENST00000595028 FAM167A-AS1Q96KT0 104 aa10.78□□□□□ -0.68
TRIM28-205ENST00000595028 MRPL32Q9BYC8 188 aaKnown RBP10.78□□□□□ -0.68
TRIM28-205ENST00000595028 SMIM3Q9BZL3 60 aa10.78□□□□□ -0.68
TRIM28-205ENST00000595028 ZNF705GA8MUZ8 300 aaPredicted RBP10.77□□□□□ -0.69
TRIM28-205ENST00000595028 NDUFB4O95168 129 aa10.77□□□□□ -0.69
TRIM28-205ENST00000595028 FCN2Q15485 313 aa10.77□□□□□ -0.69
TRIM28-205ENST00000595028 TMEM256Q8N2U0 113 aa10.77□□□□□ -0.69
TRIM28-205ENST00000595028 RPP25LQ8N5L8 163 aaKnown RBP10.77□□□□□ -0.69
TRIM28-205ENST00000595028 NIPSNAP3BQ9BS92 247 aa10.77□□□□□ -0.69
TRIM28-205ENST00000595028 NPIPB6E9PJ23 425 aa10.76□□□□□ -0.69
TRIM28-205ENST00000595028 M0R3E3 92 aa10.76□□□□□ -0.69
TRIM28-205ENST00000595028 IFNA5P01569 189 aa10.76□□□□□ -0.69
TRIM28-205ENST00000595028 TSPOP30536 169 aa10.76□□□□□ -0.69
TRIM28-205ENST00000595028 OXA1LQ15070 435 aa10.76□□□□□ -0.69
TRIM28-205ENST00000595028 BLNKQ8WV28 456 aa10.76□□□□□ -0.69
TRIM28-205ENST00000595028 ODF3Q96PU9 254 aa10.76□□□□□ -0.69
TRIM28-205ENST00000595028 PARD6GQ9BYG4 376 aaPredicted RBP10.76□□□□□ -0.69
TRIM28-205ENST00000595028 MED28Q9H204 178 aa10.76□□□□□ -0.69
TRIM28-205ENST00000595028 FUT9Q9Y231 359 aa10.76□□□□□ -0.69
TRIM28-205ENST00000595028 TIMM9Q9Y5J7 89 aa10.76□□□□□ -0.69
TRIM28-205ENST00000595028 PRM2P04554 102 aa10.75□□□□□ -0.69
TRIM28-205ENST00000595028 TAS2R60P59551 318 aa10.75□□□□□ -0.69
TRIM28-205ENST00000595028 KIR3DS1Q14943 382 aa10.75□□□□□ -0.69
TRIM28-205ENST00000595028 FFAR4Q5NUL3 377 aa10.75□□□□□ -0.69
TRIM28-205ENST00000595028 GFI1BQ5VTD9 330 aa10.75□□□□□ -0.69
TRIM28-205ENST00000595028 SCGB1C1Q8TD33 95 aa10.75□□□□□ -0.69
TRIM28-205ENST00000595028 LINC01587Q99440 93 aa10.75□□□□□ -0.69
TRIM28-205ENST00000595028 C20orf144Q9BQM9 153 aa10.75□□□□□ -0.69
TRIM28-205ENST00000595028 PRELID1Q9Y255 219 aa10.75□□□□□ -0.69
TRIM28-205ENST00000595028 PLAC8L1A1L4L8 177 aa10.74□□□□□ -0.69
TRIM28-205ENST00000595028 CT45A10P0DMU9 189 aa10.74□□□□□ -0.69
TRIM28-205ENST00000595028 EXOC3-AS1Q8N2X6 119 aa10.74□□□□□ -0.69
TRIM28-205ENST00000595028 FXYD5Q96DB9 178 aa10.74□□□□□ -0.69
TRIM28-205ENST00000595028 PAXXQ9BUH6 204 aa10.74□□□□□ -0.69
TRIM28-205ENST00000595028 OR51M1Q9H341 326 aa10.74□□□□□ -0.69
TRIM28-205ENST00000595028 AAMDCQ9H7C9 122 aa10.74□□□□□ -0.69
TRIM28-205ENST00000595028 WFDC1Q9HC57 220 aa10.74□□□□□ -0.69
TRIM28-205ENST00000595028 PLA2G2EQ9NZK7 142 aa10.74□□□□□ -0.69
TRIM28-205ENST00000595028 LYRM9A8MSI8 78 aa10.73□□□□□ -0.69
TRIM28-205ENST00000595028 H7BYZ3 331 aa10.73□□□□□ -0.69
TRIM28-205ENST00000595028 OR10J4P0C629 311 aa10.73□□□□□ -0.69
TRIM28-205ENST00000595028 NBEAP1P0C6P0 100 aa10.73□□□□□ -0.69
TRIM28-205ENST00000595028 AZU1P20160 251 aa10.73□□□□□ -0.69
TRIM28-205ENST00000595028 LEPP41159 167 aa10.73□□□□□ -0.69
TRIM28-205ENST00000595028 DAD1P61803 113 aa10.73□□□□□ -0.69
TRIM28-205ENST00000595028 RGS21Q2M5E4 152 aa10.73□□□□□ -0.69
TRIM28-205ENST00000595028 PHYHIPLQ96FC7 376 aa10.73□□□□□ -0.69
TRIM28-205ENST00000595028 NDUFAF3Q9BU61 184 aa10.73□□□□□ -0.69
TRIM28-205ENST00000595028 OR7C2O60412 319 aa10.72□□□□□ -0.69
TRIM28-205ENST00000595028 GIPP09681 153 aaPredicted RBP10.72□□□□□ -0.69
TRIM28-205ENST00000595028 UBE2L3P68036 154 aaKnown RBP10.72□□□□□ -0.69
TRIM28-205ENST00000595028 ICAM4Q14773 271 aa10.72□□□□□ -0.69
TRIM28-205ENST00000595028 ASB13Q8WXK3 278 aa10.72□□□□□ -0.69
TRIM28-205ENST00000595028 C16orf74Q96GX8 76 aa10.72□□□□□ -0.69
TRIM28-205ENST00000595028 PKHD1P08F94 4074 aa10.72□□□□□ -0.69
TRIM28-205ENST00000595028 HTN3P15516 51 aa10.71□□□□□ -0.69
TRIM28-205ENST00000595028 ERCC8Q13216 396 aa10.71□□□□□ -0.69
TRIM28-205ENST00000595028 KHDC3LQ587J8 217 aa10.71□□□□□ -0.69
TRIM28-205ENST00000595028 RNASE8Q8TDE3 154 aaKnown RBP10.71□□□□□ -0.69
TRIM28-205ENST00000595028 TMEM263Q8WUH6 116 aaKnown RBP10.71□□□□□ -0.69
TRIM28-205ENST00000595028 RNF141Q8WVD5 230 aa10.71□□□□□ -0.69
TRIM28-205ENST00000595028 ZNF503Q96F45 646 aa10.71□□□□□ -0.69
TRIM28-205ENST00000595028 FAM210BQ96KR6 192 aa10.71□□□□□ -0.69
TRIM28-205ENST00000595028 AQP10Q96PS8 301 aa10.71□□□□□ -0.69
TRIM28-205ENST00000595028 IGKV2-40A0A087WW87 121 aaPredicted RBP10.7□□□□□ -0.7
TRIM28-205ENST00000595028 J3KRW8 73 aa10.7□□□□□ -0.7
TRIM28-205ENST00000595028 IGKV2D-40P01614 121 aaPredicted RBP10.7□□□□□ -0.7
TRIM28-205ENST00000595028 HTN1P15515 57 aa10.7□□□□□ -0.7
TRIM28-205ENST00000595028 TAS2R45P59539 299 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms