RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 C9orf62Q8N4C0 152 aa1.81□□□□□ -2.12
VPS4B-203ENST00000588323 TMEM75Q8N9X5 138 aa1.81□□□□□ -2.12
VPS4B-203ENST00000588323 OR51H1Q8NH63 302 aa1.81□□□□□ -2.12
VPS4B-203ENST00000588323 LMX1AQ8TE12 382 aa1.81□□□□□ -2.12
VPS4B-203ENST00000588323 ZNF418Q8TF45 676 aaPredicted RBP1.81□□□□□ -2.12
VPS4B-203ENST00000588323 MAL2Q969L2 176 aa1.81□□□□□ -2.12
VPS4B-203ENST00000588323 APOBEC3DQ96AK3 386 aaPredicted RBP1.81□□□□□ -2.12
VPS4B-203ENST00000588323 SLAMF6Q96DU3 332 aa1.81□□□□□ -2.12
VPS4B-203ENST00000588323 TRIB3Q96RU7 358 aa1.81□□□□□ -2.12
VPS4B-203ENST00000588323 LYSMD1Q96S90 227 aa1.81□□□□□ -2.12
VPS4B-203ENST00000588323 MRPL57Q9BQC6 102 aaKnown RBP1.81□□□□□ -2.12
VPS4B-203ENST00000588323 SHANK2-AS3Q9BTD1 123 aa1.81□□□□□ -2.12
VPS4B-203ENST00000588323 EIF5A2Q9GZV4 153 aaKnown RBP1.81□□□□□ -2.12
VPS4B-203ENST00000588323 GTSF1LQ9H1H1 148 aa1.81□□□□□ -2.12
VPS4B-203ENST00000588323 MED28Q9H204 178 aa1.81□□□□□ -2.12
VPS4B-203ENST00000588323 TCEAL2Q9H3H9 227 aaPredicted RBP1.81□□□□□ -2.12
VPS4B-203ENST00000588323 LINC00574Q9H8X3 128 aa1.81□□□□□ -2.12
VPS4B-203ENST00000588323 FAM60AQ9NP50 221 aa1.81□□□□□ -2.12
VPS4B-203ENST00000588323 SCN3BQ9NY72 215 aa1.81□□□□□ -2.12
VPS4B-203ENST00000588323 MRPL27Q9P0M9 148 aaKnown RBP1.81□□□□□ -2.12
VPS4B-203ENST00000588323 MEGF8Q7Z7M0 2845 aa1.81□□□□□ -2.12
VPS4B-203ENST00000588323 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.81□□□□□ -2.12
VPS4B-203ENST00000588323 MYOFQ9NZM1 2061 aa1.81□□□□□ -2.12
VPS4B-203ENST00000588323 TGP01266 2768 aa1.81□□□□□ -2.12
VPS4B-203ENST00000588323 SONP18583 2426 aaKnown RBP1.8□□□□□ -2.12
VPS4B-203ENST00000588323 KMT2CQ8NEZ4 4911 aaKnown RBP1.8□□□□□ -2.12
VPS4B-203ENST00000588323 ZNF638Q14966 1978 aaKnown RBP1.8□□□□□ -2.12
VPS4B-203ENST00000588323 ANKRD12Q6UB98 2062 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 TRAV5A0A0B4J249 113 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 MEIS3P1A6NDR6 274 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 IFITM5A6NNB3 132 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 IGLL5B9A064 214 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 CLDN25C9JDP6 229 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 F5H5P2 479 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 UBFD1O14562 309 aaKnown RBP1.8□□□□□ -2.12
VPS4B-203ENST00000588323 OR2H2O95918 312 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 LTAP01374 205 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 PTHLHP12272 177 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 CTLA4P16410 223 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 ZNF14P17017 642 aaPredicted RBP1.8□□□□□ -2.12
VPS4B-203ENST00000588323 ZNF708P17019 499 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 CRHBPP24387 322 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 KDELR1P24390 212 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 CASP1P29466 404 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 BLVRBP30043 206 aaPredicted RBP1.8□□□□□ -2.12
VPS4B-203ENST00000588323 PSMB3P49720 205 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 GNG4P50150 75 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 TAS2R20P59543 309 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 RPL26P61254 145 aaKnown RBP1.8□□□□□ -2.12
VPS4B-203ENST00000588323 EIF5AP63241 154 aaKnown RBP1.8□□□□□ -2.12
VPS4B-203ENST00000588323 CDK6Q00534 326 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 GNA12Q03113 381 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 TMEM267Q0VDI3 215 aaPredicted RBP1.8□□□□□ -2.12
VPS4B-203ENST00000588323 FABP9Q0Z7S8 132 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 FUT5Q11128 374 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 ZNF181Q2M3W8 571 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 SPANXN3Q5MJ09 141 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 IBA57Q5T440 356 aaKnown RBP1.8□□□□□ -2.12
VPS4B-203ENST00000588323 GLT8D1Q68CQ7 371 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 EIF5AL1Q6IS14 154 aaKnown RBP1.8□□□□□ -2.12
VPS4B-203ENST00000588323 EBLN2Q6P2I7 272 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 MMGT1Q8N4V1 131 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 YIPF7Q8N8F6 280 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 ZFP62Q8NB50 900 aaPredicted RBP1.8□□□□□ -2.12
VPS4B-203ENST00000588323 OR51A4Q8NGJ6 313 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 OR2T4Q8NH00 348 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 RTN4IP1Q8WWV3 396 aaPredicted RBP1.8□□□□□ -2.12
VPS4B-203ENST00000588323 DEDD2Q8WXF8 326 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 S100ZQ8WXG8 99 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 SLC25A44Q96H78 314 aaPredicted RBP1.8□□□□□ -2.12
VPS4B-203ENST00000588323 NMNAT3Q96T66 252 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 SMR3AQ99954 134 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 TMEM147Q9BVK8 224 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 SNHG12Q9BXW3 62 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 GNB1LQ9BYB4 327 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 PLA2G12AQ9BZM1 189 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 OR8D2Q9GZM6 311 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 PBOV1Q9GZY1 135 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 PRO1933Q9H354 126 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 KCNIP2Q9NS61 270 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 COMMD3Q9UBI1 195 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 RPL26L1Q9UNX3 145 aaKnown RBP1.8□□□□□ -2.12
VPS4B-203ENST00000588323 AP4S1Q9Y587 144 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 WNK1Q9H4A3 2382 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 OBSL1O75147 1896 aa1.8□□□□□ -2.12
VPS4B-203ENST00000588323 ANAPC1Q9H1A4 1944 aa1.79□□□□□ -2.12
VPS4B-203ENST00000588323 RYR3Q15413 4870 aa1.79□□□□□ -2.12
VPS4B-203ENST00000588323 CNTRLQ7Z7A1 2325 aa1.79□□□□□ -2.12
VPS4B-203ENST00000588323 TRAV8-1A0A0A6YYK1 113 aa1.79□□□□□ -2.12
VPS4B-203ENST00000588323 IGHV3-21A0A0B4J1V1 117 aa1.79□□□□□ -2.12
VPS4B-203ENST00000588323 TRAV26-2A0A0B4J265 109 aa1.79□□□□□ -2.12
VPS4B-203ENST00000588323 A0A0J9YY10 115 aa1.79□□□□□ -2.12
VPS4B-203ENST00000588323 A0A1B0GX78 115 aa1.79□□□□□ -2.12
VPS4B-203ENST00000588323 C7orf66A4D0T2 115 aa1.79□□□□□ -2.12
VPS4B-203ENST00000588323 C19orf84I3L1E1 186 aa1.79□□□□□ -2.12
VPS4B-203ENST00000588323 HCRTO43612 131 aa1.79□□□□□ -2.12
VPS4B-203ENST00000588323 DPM2O94777 84 aa1.79□□□□□ -2.12
VPS4B-203ENST00000588323 APOMO95445 188 aa1.79□□□□□ -2.12
VPS4B-203ENST00000588323 HLA-DRB1P01911 266 aa1.79□□□□□ -2.12
VPS4B-203ENST00000588323 CSN2P05814 226 aa1.79□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms