RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 H3BTX0 84 aa9.63□□□□□ -0.87
CCDC40-216ENST00000576241 SLC17A3O00476 420 aa9.63□□□□□ -0.87
CCDC40-216ENST00000576241 NUDT3O95989 172 aa9.63□□□□□ -0.87
CCDC40-216ENST00000576241 S100A10P60903 97 aa9.63□□□□□ -0.87
CCDC40-216ENST00000576241 GUK1Q16774 197 aa9.63□□□□□ -0.87
CCDC40-216ENST00000576241 C1orf134Q5TEV5 83 aa9.63□□□□□ -0.87
CCDC40-216ENST00000576241 MORN5Q5VZ52 161 aa9.63□□□□□ -0.87
CCDC40-216ENST00000576241 CCDC28AQ8IWP9 274 aa9.63□□□□□ -0.87
CCDC40-216ENST00000576241 C12orf45Q8N5I9 185 aaPredicted RBP9.63□□□□□ -0.87
CCDC40-216ENST00000576241 TMEM263Q8WUH6 116 aaKnown RBP9.63□□□□□ -0.87
CCDC40-216ENST00000576241 C2orf50Q96LR7 162 aa9.63□□□□□ -0.87
CCDC40-216ENST00000576241 PFDN5Q99471 154 aa9.63□□□□□ -0.87
CCDC40-216ENST00000576241 SEC22CQ9BRL7 303 aa9.63□□□□□ -0.87
CCDC40-216ENST00000576241 NOP10Q9NPE3 64 aaKnown RBP9.63□□□□□ -0.87
CCDC40-216ENST00000576241 NDUFA13Q9P0J0 144 aa9.63□□□□□ -0.87
CCDC40-216ENST00000576241 WDR83OSQ9Y284 106 aa9.63□□□□□ -0.87
CCDC40-216ENST00000576241 UBE2L5PA0A1B0GUS4 154 aa9.62□□□□□ -0.87
CCDC40-216ENST00000576241 FAM24AA6NFZ4 105 aa9.62□□□□□ -0.87
CCDC40-216ENST00000576241 IGLC2P0DOY2 106 aa9.62□□□□□ -0.87
CCDC40-216ENST00000576241 S100A11P31949 105 aa9.62□□□□□ -0.87
CCDC40-216ENST00000576241 HBG1P69891 147 aa9.62□□□□□ -0.87
CCDC40-216ENST00000576241 HBG2P69892 147 aa9.62□□□□□ -0.87
CCDC40-216ENST00000576241 BAXQ07812 192 aa9.62□□□□□ -0.87
CCDC40-216ENST00000576241 MIC13Q5XKP0 118 aa9.62□□□□□ -0.87
CCDC40-216ENST00000576241 STX12Q86Y82 276 aa9.62□□□□□ -0.87
CCDC40-216ENST00000576241 RNASE8Q8TDE3 154 aaKnown RBP9.62□□□□□ -0.87
CCDC40-216ENST00000576241 PRAC2D3DTV9 90 aa9.61□□□□□ -0.87
CCDC40-216ENST00000576241 H3BQ15 152 aa9.61□□□□□ -0.87
CCDC40-216ENST00000576241 H2AFB2P0C5Z0 115 aa9.61□□□□□ -0.87
CCDC40-216ENST00000576241 SULT1A1P50225 295 aa9.61□□□□□ -0.87
CCDC40-216ENST00000576241 CCL18P55774 89 aa9.61□□□□□ -0.87
CCDC40-216ENST00000576241 CLINT1Q14677 625 aa9.61□□□□□ -0.87
CCDC40-216ENST00000576241 CCDC32Q9BV29 185 aa9.61□□□□□ -0.87
CCDC40-216ENST00000576241 PARD6GQ9BYG4 376 aaPredicted RBP9.61□□□□□ -0.87
CCDC40-216ENST00000576241 LYRM2Q9NU23 88 aaPredicted RBP9.61□□□□□ -0.87
CCDC40-216ENST00000576241 SLC39A9Q9NUM3 307 aa9.61□□□□□ -0.87
CCDC40-216ENST00000576241 TRAV5A0A0B4J249 113 aa9.6□□□□□ -0.87
CCDC40-216ENST00000576241 LEPP41159 167 aa9.6□□□□□ -0.87
CCDC40-216ENST00000576241 RPL29P47914 159 aaKnown RBP9.6□□□□□ -0.87
CCDC40-216ENST00000576241 VWC2Q2TAL6 325 aa9.6□□□□□ -0.87
CCDC40-216ENST00000576241 GFI1BQ5VTD9 330 aa9.6□□□□□ -0.87
CCDC40-216ENST00000576241 SAT2Q96F10 170 aaPredicted RBP9.6□□□□□ -0.87
CCDC40-216ENST00000576241 ODF3Q96PU9 254 aa9.6□□□□□ -0.87
CCDC40-216ENST00000576241 C11orf1Q9H5F2 150 aa9.6□□□□□ -0.87
CCDC40-216ENST00000576241 FAM240BA0A1B0GVZ2 78 aa9.59□□□□□ -0.87
CCDC40-216ENST00000576241 IGSF23A1L1A6 192 aa9.59□□□□□ -0.87
CCDC40-216ENST00000576241 SNURFLB1AK76 121 aa9.59□□□□□ -0.87
CCDC40-216ENST00000576241 NPIPB6E9PJ23 425 aa9.59□□□□□ -0.87
CCDC40-216ENST00000576241 J3KRW8 73 aa9.59□□□□□ -0.87
CCDC40-216ENST00000576241 RAB32Q13637 225 aa9.59□□□□□ -0.87
CCDC40-216ENST00000576241 KIR3DS1Q14943 382 aa9.59□□□□□ -0.87
CCDC40-216ENST00000576241 MZT2BQ6NZ67 158 aa9.59□□□□□ -0.87
CCDC40-216ENST00000576241 TMEM252Q8N6L7 170 aa9.59□□□□□ -0.87
CCDC40-216ENST00000576241 RNF141Q8WVD5 230 aa9.59□□□□□ -0.87
CCDC40-216ENST00000576241 TRAV12-3A0A0B4J271 114 aa9.58□□□□□ -0.88
CCDC40-216ENST00000576241 ZNF253O75346 499 aa9.58□□□□□ -0.88
CCDC40-216ENST00000576241 MPDU1O75352 247 aa9.58□□□□□ -0.88
CCDC40-216ENST00000576241 RLN2P04090 185 aa9.58□□□□□ -0.88
CCDC40-216ENST00000576241 CT45A10P0DMU9 189 aa9.58□□□□□ -0.88
CCDC40-216ENST00000576241 FGF7P21781 194 aa9.58□□□□□ -0.88
CCDC40-216ENST00000576241 OR5I1Q13606 314 aa9.58□□□□□ -0.88
CCDC40-216ENST00000576241 ATP6V1FQ16864 119 aa9.58□□□□□ -0.88
CCDC40-216ENST00000576241 ZNRF2Q8NHG8 242 aa9.58□□□□□ -0.88
CCDC40-216ENST00000576241 MRPL53Q96EL3 112 aaKnown RBP9.58□□□□□ -0.88
CCDC40-216ENST00000576241 GPN1Q9HCN4 374 aaPredicted RBP9.58□□□□□ -0.88
CCDC40-216ENST00000576241 ZNF586Q9NXT0 402 aa9.58□□□□□ -0.88
CCDC40-216ENST00000576241 TRBV19A0A075B6N1 114 aa9.57□□□□□ -0.88
CCDC40-216ENST00000576241 NBDYA0A0U1RRE5 68 aa9.57□□□□□ -0.88
CCDC40-216ENST00000576241 GAGE12BA1L429 117 aa9.57□□□□□ -0.88
CCDC40-216ENST00000576241 GAGE7O76087 117 aa9.57□□□□□ -0.88
CCDC40-216ENST00000576241 GAGE12FP0CL80 117 aa9.57□□□□□ -0.88
CCDC40-216ENST00000576241 GAGE12GP0CL81 117 aa9.57□□□□□ -0.88
CCDC40-216ENST00000576241 GAGE12IP0CL82 117 aa9.57□□□□□ -0.88
CCDC40-216ENST00000576241 M6PRP20645 277 aa9.57□□□□□ -0.88
CCDC40-216ENST00000576241 CHAC2Q8WUX2 184 aa9.57□□□□□ -0.88
CCDC40-216ENST00000576241 GNPNAT1Q96EK6 184 aaPredicted RBP9.57□□□□□ -0.88
CCDC40-216ENST00000576241 PYGO2Q9BRQ0 406 aa9.57□□□□□ -0.88
CCDC40-216ENST00000576241 TMEM14CQ9P0S9 112 aa9.57□□□□□ -0.88
CCDC40-216ENST00000576241 PRELID1Q9Y255 219 aa9.57□□□□□ -0.88
CCDC40-216ENST00000576241 TIMM9Q9Y5J7 89 aa9.57□□□□□ -0.88
CCDC40-216ENST00000576241 TRAV26-1A0A087WT03 109 aa9.56□□□□□ -0.88
CCDC40-216ENST00000576241 CDK2AP2O75956 126 aa9.56□□□□□ -0.88
CCDC40-216ENST00000576241 HIST1H1EP10412 219 aaKnown RBP9.56□□□□□ -0.88
CCDC40-216ENST00000576241 IL15RAQ13261 267 aa9.56□□□□□ -0.88
CCDC40-216ENST00000576241 PDE6HQ13956 83 aa9.56□□□□□ -0.88
CCDC40-216ENST00000576241 SSX7Q7RTT5 188 aa9.56□□□□□ -0.88
CCDC40-216ENST00000576241 C6orf223Q8N319 242 aa9.56□□□□□ -0.88
CCDC40-216ENST00000576241 LINC00612Q8N6U2 182 aa9.56□□□□□ -0.88
CCDC40-216ENST00000576241 LINC00588Q9Y4M8 146 aa9.56□□□□□ -0.88
CCDC40-216ENST00000576241 C7orf71A4D174 169 aa9.55□□□□□ -0.88
CCDC40-216ENST00000576241 M0R3E3 92 aa9.55□□□□□ -0.88
CCDC40-216ENST00000576241 SLC25A5P05141 298 aaKnown RBP9.55□□□□□ -0.88
CCDC40-216ENST00000576241 ASAH1Q13510 395 aa9.55□□□□□ -0.88
CCDC40-216ENST00000576241 LINC00299Q6ZSB3 139 aa9.55□□□□□ -0.88
CCDC40-216ENST00000576241 Q8N1X5 172 aa9.55□□□□□ -0.88
CCDC40-216ENST00000576241 RXFP4Q8TDU9 374 aa9.55□□□□□ -0.88
CCDC40-216ENST00000576241 S100ZQ8WXG8 99 aa9.55□□□□□ -0.88
CCDC40-216ENST00000576241 ZNF503Q96F45 646 aa9.55□□□□□ -0.88
CCDC40-216ENST00000576241 NPCDR1Q9BY65 106 aa9.55□□□□□ -0.88
CCDC40-216ENST00000576241 AAMDCQ9H7C9 122 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms