RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 C9orf163Q8N9P6 203 aa10.18□□□□□ -0.78
VPS53-218ENST00000575207 OR10P1Q8NGE3 313 aa10.18□□□□□ -0.78
VPS53-218ENST00000575207 DAZ3Q9NR90 486 aaKnown RBP10.18□□□□□ -0.78
VPS53-218ENST00000575207 TP53TG3Q9ULZ0 132 aa10.18□□□□□ -0.78
VPS53-218ENST00000575207 PFN1P07737 140 aaKnown RBP10.17□□□□□ -0.78
VPS53-218ENST00000575207 MEF2DQ14814 521 aa10.17□□□□□ -0.78
VPS53-218ENST00000575207 ZNF486Q96H40 463 aaPredicted RBP10.17□□□□□ -0.78
VPS53-218ENST00000575207 ZNF331Q9NQX6 463 aaPredicted RBP10.17□□□□□ -0.78
VPS53-218ENST00000575207 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.16□□□□□ -0.78
VPS53-218ENST00000575207 MPDU1O75352 247 aa10.16□□□□□ -0.78
VPS53-218ENST00000575207 CXCL2P19875 107 aa10.16□□□□□ -0.78
VPS53-218ENST00000575207 ZC2HC1AQ96GY0 325 aa10.16□□□□□ -0.78
VPS53-218ENST00000575207 SCN3BQ9NY72 215 aa10.16□□□□□ -0.78
VPS53-218ENST00000575207 PITX3O75364 302 aa10.15□□□□□ -0.78
VPS53-218ENST00000575207 RCVRNP35243 200 aa10.15□□□□□ -0.78
VPS53-218ENST00000575207 PRR3P79522 188 aaKnown RBP10.15□□□□□ -0.78
VPS53-218ENST00000575207 BTN1A1Q13410 526 aa10.15□□□□□ -0.78
VPS53-218ENST00000575207 LCN15Q6UWW0 184 aa10.15□□□□□ -0.78
VPS53-218ENST00000575207 TMEM182Q6ZP80 229 aaPredicted RBP10.15□□□□□ -0.78
VPS53-218ENST00000575207 OR1S1Q8NH92 325 aa10.15□□□□□ -0.78
VPS53-218ENST00000575207 ARPC5LQ9BPX5 153 aa10.15□□□□□ -0.78
VPS53-218ENST00000575207 SLC50A1Q9BRV3 221 aa10.15□□□□□ -0.78
VPS53-218ENST00000575207 NDUFB11Q9NX14 153 aa10.15□□□□□ -0.78
VPS53-218ENST00000575207 CACFD1Q9UGQ2 172 aa10.15□□□□□ -0.78
VPS53-218ENST00000575207 MUC17Q685J3 4493 aa10.15□□□□□ -0.79
VPS53-218ENST00000575207 PMS2P5A8MQ11 134 aa10.14□□□□□ -0.79
VPS53-218ENST00000575207 RGS13O14921 159 aa10.14□□□□□ -0.79
VPS53-218ENST00000575207 ATP5IP56385 69 aaPredicted RBP10.14□□□□□ -0.79
VPS53-218ENST00000575207 RAP2BP61225 183 aa10.14□□□□□ -0.79
VPS53-218ENST00000575207 DGAT2L7PQ6IED9 249 aa10.14□□□□□ -0.79
VPS53-218ENST00000575207 DTD1Q8TEA8 209 aa10.14□□□□□ -0.79
VPS53-218ENST00000575207 S100A14Q9HCY8 104 aa10.14□□□□□ -0.79
VPS53-218ENST00000575207 HIGD1AQ9Y241 93 aa10.14□□□□□ -0.79
VPS53-218ENST00000575207 FABP12A6NFH5 140 aa10.13□□□□□ -0.79
VPS53-218ENST00000575207 KLLNB2CW77 178 aa10.13□□□□□ -0.79
VPS53-218ENST00000575207 C7orf33Q8WU49 177 aa10.13□□□□□ -0.79
VPS53-218ENST00000575207 RNF185Q96GF1 192 aa10.13□□□□□ -0.79
VPS53-218ENST00000575207 A0A087WYN8 130 aa10.12□□□□□ -0.79
VPS53-218ENST00000575207 CDS2O95674 445 aa10.12□□□□□ -0.79
VPS53-218ENST00000575207 RNASE4P34096 147 aaKnown RBP10.12□□□□□ -0.79
VPS53-218ENST00000575207 VWC2Q2TAL6 325 aa10.12□□□□□ -0.79
VPS53-218ENST00000575207 DPPA3Q6W0C5 159 aa10.12□□□□□ -0.79
VPS53-218ENST00000575207 RASL10AQ92737 203 aa10.12□□□□□ -0.79
VPS53-218ENST00000575207 DNAJC30Q96LL9 226 aa10.12□□□□□ -0.79
VPS53-218ENST00000575207 IGHV1OR15-1A0A075B7D0 117 aa10.11□□□□□ -0.79
VPS53-218ENST00000575207 TRAV4A0A0B4J268 109 aa10.11□□□□□ -0.79
VPS53-218ENST00000575207 MRPS12O15235 138 aaKnown RBP10.11□□□□□ -0.79
VPS53-218ENST00000575207 B3GALNT1O75752 331 aa10.11□□□□□ -0.79
VPS53-218ENST00000575207 ATP5HO75947 161 aa10.11□□□□□ -0.79
VPS53-218ENST00000575207 GTSF1LQ9H1H1 148 aa10.11□□□□□ -0.79
VPS53-218ENST00000575207 COPZ2Q9P299 210 aa10.11□□□□□ -0.79
VPS53-218ENST00000575207 SNRPCP09234 159 aaKnown RBP10.1□□□□□ -0.79
VPS53-218ENST00000575207 ANXA7P20073 488 aaKnown RBP10.1□□□□□ -0.79
VPS53-218ENST00000575207 SRSF9Q13242 221 aaKnown RBP eCLIP10.1□□□□□ -0.79
VPS53-218ENST00000575207 PRR4Q16378 134 aa10.1□□□□□ -0.79
VPS53-218ENST00000575207 PACRGLQ8N7B6 248 aa10.1□□□□□ -0.79
VPS53-218ENST00000575207 OR4C5Q8NGB2 326 aa10.1□□□□□ -0.79
VPS53-218ENST00000575207 LHFPL5Q8TAF8 219 aa10.1□□□□□ -0.79
VPS53-218ENST00000575207 DPH3Q96FX2 82 aa10.1□□□□□ -0.79
VPS53-218ENST00000575207 TMEM222Q9H0R3 208 aa10.1□□□□□ -0.79
VPS53-218ENST00000575207 HYPMO75409 117 aa10.09□□□□□ -0.79
VPS53-218ENST00000575207 GATA1P15976 413 aaPredicted RBP10.09□□□□□ -0.79
VPS53-218ENST00000575207 OPCMLQ14982 345 aa10.09□□□□□ -0.79
VPS53-218ENST00000575207 ACOT7LQ6ZUV0 252 aa10.09□□□□□ -0.79
VPS53-218ENST00000575207 CCDC71LQ8N9Z2 235 aa10.09□□□□□ -0.79
VPS53-218ENST00000575207 C2orf50Q96LR7 162 aa10.09□□□□□ -0.79
VPS53-218ENST00000575207 DUSP21Q9H596 190 aa10.09□□□□□ -0.79
VPS53-218ENST00000575207 C8orf4Q9NR00 106 aa10.09□□□□□ -0.79
VPS53-218ENST00000575207 TPRKBQ9Y3C4 175 aa10.09□□□□□ -0.79
VPS53-218ENST00000575207 IGHV3-16A0A0C4DH30 117 aa10.08□□□□□ -0.8
VPS53-218ENST00000575207 SLC17A3O00476 420 aa10.08□□□□□ -0.8
VPS53-218ENST00000575207 TAAR5O14804 337 aa10.08□□□□□ -0.8
VPS53-218ENST00000575207 OR5G3P0C626 314 aa10.08□□□□□ -0.8
VPS53-218ENST00000575207 OR4E1P0C645 316 aa10.08□□□□□ -0.8
VPS53-218ENST00000575207 SULT1A3P0DMM9 295 aa10.08□□□□□ -0.8
VPS53-218ENST00000575207 SULT1A4P0DMN0 295 aa10.08□□□□□ -0.8
VPS53-218ENST00000575207 PRSS3P35030 304 aa10.08□□□□□ -0.8
VPS53-218ENST00000575207 ATRAIDQ6UW56 229 aa10.08□□□□□ -0.8
VPS53-218ENST00000575207 SELENOHQ8IZQ5 122 aaKnown RBP10.08□□□□□ -0.8
VPS53-218ENST00000575207 RBKSQ9H477 322 aa10.08□□□□□ -0.8
VPS53-218ENST00000575207 TXNL4BQ9NX01 149 aaKnown RBP10.08□□□□□ -0.8
VPS53-218ENST00000575207 HSPB7Q9UBY9 170 aa10.08□□□□□ -0.8
VPS53-218ENST00000575207 CCSO14618 274 aa10.07□□□□□ -0.8
VPS53-218ENST00000575207 GPX1P07203 203 aa10.07□□□□□ -0.8
VPS53-218ENST00000575207 RAB11AP62491 216 aa10.07□□□□□ -0.8
VPS53-218ENST00000575207 RPL19P84098 196 aaKnown RBP10.07□□□□□ -0.8
VPS53-218ENST00000575207 S100A7AQ86SG5 101 aa10.07□□□□□ -0.8
VPS53-218ENST00000575207 OR4D10Q8NGI6 311 aa10.07□□□□□ -0.8
VPS53-218ENST00000575207 S100A16Q96FQ6 103 aaKnown RBP10.07□□□□□ -0.8
VPS53-218ENST00000575207 PLAC8Q9NZF1 115 aa10.07□□□□□ -0.8
VPS53-218ENST00000575207 H7C1H1 209 aa10.06□□□□□ -0.8
VPS53-218ENST00000575207 OR10J4P0C629 311 aa10.06□□□□□ -0.8
VPS53-218ENST00000575207 SEC11BP0C7V7 166 aa10.06□□□□□ -0.8
VPS53-218ENST00000575207 Q6ZQT7 251 aa10.06□□□□□ -0.8
VPS53-218ENST00000575207 SLC25A29Q8N8R3 303 aa10.06□□□□□ -0.8
VPS53-218ENST00000575207 GLYATL2Q8WU03 294 aa10.06□□□□□ -0.8
VPS53-218ENST00000575207 FAM19A4Q96LR4 140 aa10.06□□□□□ -0.8
VPS53-218ENST00000575207 OR51M1Q9H341 326 aa10.06□□□□□ -0.8
VPS53-218ENST00000575207 RNF24Q9Y225 148 aa10.06□□□□□ -0.8
VPS53-218ENST00000575207 PXMP4Q9Y6I8 212 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 119.4 ms