RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 TEX261Q6UWH6 196 aa12.63□□□□□ -0.39
NUP88-210ENST00000574867 OTORQ9NRC9 128 aa12.63□□□□□ -0.39
NUP88-210ENST00000574867 KNCNA6PVL3 124 aa12.63□□□□□ -0.39
NUP88-210ENST00000574867 TMPRSS5Q9H3S3 457 aa12.63□□□□□ -0.39
NUP88-210ENST00000574867 ARL2-SNX15V9GYD0 113 aa12.63□□□□□ -0.39
NUP88-210ENST00000574867 FBN3Q75N90 2809 aa12.63□□□□□ -0.39
NUP88-210ENST00000574867 MEGF8Q7Z7M0 2845 aa12.63□□□□□ -0.39
NUP88-210ENST00000574867 A0A0J9YX75 114 aa12.62□□□□□ -0.39
NUP88-210ENST00000574867 A0A1W2PRE2 83 aa12.62□□□□□ -0.39
NUP88-210ENST00000574867 FRMD6-AS1P0C7T7 363 aa12.62□□□□□ -0.39
NUP88-210ENST00000574867 PPT1P50897 306 aa12.62□□□□□ -0.39
NUP88-210ENST00000574867 BLOC1S1P78537 153 aa12.62□□□□□ -0.39
NUP88-210ENST00000574867 LOC102724200A0A096LPH7 203 aaPredicted RBP12.61□□□□□ -0.39
NUP88-210ENST00000574867 M0R3E3 92 aa12.61□□□□□ -0.39
NUP88-210ENST00000574867 IFNA7P01567 189 aa12.61□□□□□ -0.39
NUP88-210ENST00000574867 TRPT1Q86TN4 253 aaKnown RBP12.61□□□□□ -0.39
NUP88-210ENST00000574867 RXFP4Q8TDU9 374 aa12.61□□□□□ -0.39
NUP88-210ENST00000574867 RBMY1BA6NDE4 496 aaKnown RBP12.61□□□□□ -0.39
NUP88-210ENST00000574867 RBMY1EA6NEQ0 496 aaKnown RBP12.61□□□□□ -0.39
NUP88-210ENST00000574867 F6UB75 175 aa12.61□□□□□ -0.39
NUP88-210ENST00000574867 H3BMM0 161 aa12.61□□□□□ -0.39
NUP88-210ENST00000574867 DUSP14O95147 198 aaKnown RBP12.61□□□□□ -0.39
NUP88-210ENST00000574867 RBMY1DP0C7P1 496 aaKnown RBP12.61□□□□□ -0.39
NUP88-210ENST00000574867 CSN1S1P47710 185 aa12.61□□□□□ -0.39
NUP88-210ENST00000574867 GDF5OSQ5U4N7 250 aa12.61□□□□□ -0.39
NUP88-210ENST00000574867 LINC00322Q6ZN03 302 aaPredicted RBP12.61□□□□□ -0.39
NUP88-210ENST00000574867 ARL6IP6Q8N6S5 226 aa12.61□□□□□ -0.39
NUP88-210ENST00000574867 OR8A1Q8NGG7 326 aa12.61□□□□□ -0.39
NUP88-210ENST00000574867 CLUHP3Q96NS8 147 aa12.61□□□□□ -0.39
NUP88-210ENST00000574867 NKX6-2Q9C056 277 aaPredicted RBP12.61□□□□□ -0.39
NUP88-210ENST00000574867 A0A1B0GV50 99 aa12.6□□□□□ -0.39
NUP88-210ENST00000574867 ZNF705FA8MVS1 300 aaPredicted RBP12.6□□□□□ -0.39
NUP88-210ENST00000574867 DEFB1P60022 68 aa12.6□□□□□ -0.39
NUP88-210ENST00000574867 ZNF680Q8NEM1 530 aa12.6□□□□□ -0.39
NUP88-210ENST00000574867 CMTM2Q8TAZ6 248 aa12.6□□□□□ -0.39
NUP88-210ENST00000574867 KIR2DL5BA0A0G2JN68 375 aa12.6□□□□□ -0.39
NUP88-210ENST00000574867 KIR2DL5BA0A0G2JPC4 375 aa12.6□□□□□ -0.39
NUP88-210ENST00000574867 PGPA6NDG6 321 aa12.6□□□□□ -0.39
NUP88-210ENST00000574867 APOC4P55056 127 aa12.6□□□□□ -0.39
NUP88-210ENST00000574867 KIR2DL5AQ8N109 375 aa12.6□□□□□ -0.39
NUP88-210ENST00000574867 OR10J6PQ8NGY7 276 aa12.6□□□□□ -0.39
NUP88-210ENST00000574867 KIR2DL5BQ8NHK3 375 aa12.6□□□□□ -0.39
NUP88-210ENST00000574867 HIST1H1AQ02539 215 aaPredicted RBP12.59□□□□□ -0.39
NUP88-210ENST00000574867 C5orf17Q8NAS9 161 aa12.59□□□□□ -0.39
NUP88-210ENST00000574867 FAM74A7A6NL05 159 aa12.58□□□□□ -0.39
NUP88-210ENST00000574867 A8MTW9 85 aa12.58□□□□□ -0.39
NUP88-210ENST00000574867 GGTLC3B5MD39 225 aa12.58□□□□□ -0.39
NUP88-210ENST00000574867 RPL35AP18077 110 aaKnown RBP12.58□□□□□ -0.39
NUP88-210ENST00000574867 CNN1P51911 297 aaKnown RBP12.58□□□□□ -0.39
NUP88-210ENST00000574867 UBE2G2P60604 165 aa12.58□□□□□ -0.39
NUP88-210ENST00000574867 OR4B1Q8NGF8 309 aa12.58□□□□□ -0.39
NUP88-210ENST00000574867 MANBALQ9NQG1 85 aa12.58□□□□□ -0.39
NUP88-210ENST00000574867 YTHDF2Q9Y5A9 579 aaKnown RBP12.58□□□□□ -0.39
NUP88-210ENST00000574867 PRAC2D3DTV9 90 aa12.58□□□□□ -0.4
NUP88-210ENST00000574867 NUTF2P61970 127 aaKnown RBP12.58□□□□□ -0.4
NUP88-210ENST00000574867 MORN3Q6PF18 240 aaPredicted RBP12.58□□□□□ -0.4
NUP88-210ENST00000574867 AGRNO00468 2067 aa12.57□□□□□ -0.4
NUP88-210ENST00000574867 SLC25A5P05141 298 aaKnown RBP12.57□□□□□ -0.4
NUP88-210ENST00000574867 SUMO1P63165 101 aaKnown RBP12.57□□□□□ -0.4
NUP88-210ENST00000574867 TCEAL7Q9BRU2 100 aa12.57□□□□□ -0.4
NUP88-210ENST00000574867 SERTM2A0A1B0GWG4 89 aa12.57□□□□□ -0.4
NUP88-210ENST00000574867 RBAKDNA6NC62 111 aa12.57□□□□□ -0.4
NUP88-210ENST00000574867 DIRC3C9JPN6 131 aa12.57□□□□□ -0.4
NUP88-210ENST00000574867 NPIPB6E9PJ23 425 aa12.57□□□□□ -0.4
NUP88-210ENST00000574867 IFNA1P01562 189 aa12.57□□□□□ -0.4
NUP88-210ENST00000574867 PMS2P11Q13670 270 aa12.57□□□□□ -0.4
NUP88-210ENST00000574867 ZNF705DP0CH99 300 aaPredicted RBP12.56□□□□□ -0.4
NUP88-210ENST00000574867 ZNF705BP0CI00 300 aaPredicted RBP12.56□□□□□ -0.4
NUP88-210ENST00000574867 LYPD6BQ8NI32 183 aa12.56□□□□□ -0.4
NUP88-210ENST00000574867 B9D2Q9BPU9 175 aa12.56□□□□□ -0.4
NUP88-210ENST00000574867 CSTL1Q9H114 145 aa12.56□□□□□ -0.4
NUP88-210ENST00000574867 UBE2CO00762 179 aa12.55□□□□□ -0.4
NUP88-210ENST00000574867 PAGE4O60829 102 aa12.55□□□□□ -0.4
NUP88-210ENST00000574867 CCL20P78556 96 aa12.55□□□□□ -0.4
NUP88-210ENST00000574867 CST9LP1Q5W188 147 aa12.55□□□□□ -0.4
NUP88-210ENST00000574867 GNG13Q9P2W3 67 aa12.55□□□□□ -0.4
NUP88-210ENST00000574867 IGKV2-40A0A087WW87 121 aaPredicted RBP12.55□□□□□ -0.4
NUP88-210ENST00000574867 IGKV2D-40P01614 121 aaPredicted RBP12.55□□□□□ -0.4
NUP88-210ENST00000574867 IGKV3-20P01619 116 aa12.55□□□□□ -0.4
NUP88-210ENST00000574867 HAGHQ16775 308 aa12.55□□□□□ -0.4
NUP88-210ENST00000574867 C9orf47Q6ZRZ4 202 aa12.55□□□□□ -0.4
NUP88-210ENST00000574867 EPDR1Q9UM22 224 aa12.55□□□□□ -0.4
NUP88-210ENST00000574867 RPH3ALQ9UNE2 315 aa12.55□□□□□ -0.4
NUP88-210ENST00000574867 TCRAP04437 139 aa12.54□□□□□ -0.4
NUP88-210ENST00000574867 PRB4P10163 310 aaPredicted RBP12.54□□□□□ -0.4
NUP88-210ENST00000574867 TAGLN2P37802 199 aaKnown RBP12.54□□□□□ -0.4
NUP88-210ENST00000574867 TMEM78Q5T7P6 136 aa12.54□□□□□ -0.4
NUP88-210ENST00000574867 AMTNQ6UX39 209 aa12.54□□□□□ -0.4
NUP88-210ENST00000574867 LINC00477Q96M19 166 aa12.54□□□□□ -0.4
NUP88-210ENST00000574867 ODF3Q96PU9 254 aa12.54□□□□□ -0.4
NUP88-210ENST00000574867 TXNDC17Q9BRA2 123 aa12.54□□□□□ -0.4
NUP88-210ENST00000574867 ATG101Q9BSB4 218 aa12.54□□□□□ -0.4
NUP88-210ENST00000574867 C1QTNF4Q9BXJ3 329 aa12.54□□□□□ -0.4
NUP88-210ENST00000574867 PPP1R14DQ9NXH3 145 aa12.54□□□□□ -0.4
NUP88-210ENST00000574867 K7EQM0 130 aa12.53□□□□□ -0.4
NUP88-210ENST00000574867 CA1P00915 261 aaPredicted RBP12.53□□□□□ -0.4
NUP88-210ENST00000574867 GNG5P63218 68 aa12.53□□□□□ -0.4
NUP88-210ENST00000574867 GOLT1AQ6ZVE7 132 aa12.53□□□□□ -0.4
NUP88-210ENST00000574867 CCDC28AQ8IWP9 274 aa12.53□□□□□ -0.4
NUP88-210ENST00000574867 AMBPP02760 352 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms