RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 GNPNAT1Q96EK6 184 aaPredicted RBP2.57□□□□□ -2
NUP88-208ENST00000574087 ZC2HC1AQ96GY0 325 aa2.57□□□□□ -2
NUP88-208ENST00000574087 PEBP4Q96S96 227 aa2.57□□□□□ -2
NUP88-208ENST00000574087 HIST1H2BNQ99877 126 aa2.57□□□□□ -2
NUP88-208ENST00000574087 HIST1H2BMQ99879 126 aa2.57□□□□□ -2
NUP88-208ENST00000574087 COMMD5Q9GZQ3 224 aa2.57□□□□□ -2
NUP88-208ENST00000574087 TMEM106BQ9NUM4 274 aa2.57□□□□□ -2
NUP88-208ENST00000574087 LINC00527Q9UJ94 153 aa2.57□□□□□ -2
NUP88-208ENST00000574087 NOP16Q9Y3C1 178 aaKnown RBP2.57□□□□□ -2
NUP88-208ENST00000574087 CHCHD2Q9Y6H1 151 aaPredicted RBP2.57□□□□□ -2
NUP88-208ENST00000574087 SCN9AQ15858 1988 aa2.57□□□□□ -2
NUP88-208ENST00000574087 DIP2BQ9P265 1576 aa2.57□□□□□ -2
NUP88-208ENST00000574087 PKD1L3Q7Z443 1732 aa2.56□□□□□ -2
NUP88-208ENST00000574087 RGPD2P0DJD1 1756 aa2.56□□□□□ -2
NUP88-208ENST00000574087 NLRC5Q86WI3 1866 aa2.56□□□□□ -2
NUP88-208ENST00000574087 ANKRD31Q8N7Z5 1873 aa2.56□□□□□ -2
NUP88-208ENST00000574087 ALPK3Q96L96 1907 aa2.56□□□□□ -2
NUP88-208ENST00000574087 ZFC3H1O60293 1989 aaKnown RBP2.56□□□□□ -2
NUP88-208ENST00000574087 TRAV8-1A0A0A6YYK1 113 aa2.56□□□□□ -2
NUP88-208ENST00000574087 LOC107986453A0A1B0GWG9 222 aa2.56□□□□□ -2
NUP88-208ENST00000574087 ODAMA1E959 279 aa2.56□□□□□ -2
NUP88-208ENST00000574087 TMEM235A6NFC5 223 aa2.56□□□□□ -2
NUP88-208ENST00000574087 TLCD2A6NGC4 264 aa2.56□□□□□ -2
NUP88-208ENST00000574087 TMEM250H0YL14 139 aa2.56□□□□□ -2
NUP88-208ENST00000574087 M0R2P5 195 aa2.56□□□□□ -2
NUP88-208ENST00000574087 GEMIN2O14893 280 aaKnown RBP2.56□□□□□ -2
NUP88-208ENST00000574087 UQCRQO14949 82 aa2.56□□□□□ -2
NUP88-208ENST00000574087 PSPHP1O15172 72 aa2.56□□□□□ -2
NUP88-208ENST00000574087 YPEL1O60688 119 aa2.56□□□□□ -2
NUP88-208ENST00000574087 NDUFB6O95139 128 aa2.56□□□□□ -2
NUP88-208ENST00000574087 FSTL3O95633 263 aa2.56□□□□□ -2
NUP88-208ENST00000574087 TRBV12-3P01733 135 aa2.56□□□□□ -2
NUP88-208ENST00000574087 MT-ATP8P03928 68 aa2.56□□□□□ -2
NUP88-208ENST00000574087 TRGC2P03986 189 aa2.56□□□□□ -2
NUP88-208ENST00000574087 CRYGAP11844 174 aa2.56□□□□□ -2
NUP88-208ENST00000574087 SRP14P37108 136 aaKnown RBP2.56□□□□□ -2
NUP88-208ENST00000574087 CA7P43166 264 aa2.56□□□□□ -2
NUP88-208ENST00000574087 PSMB2P49721 201 aa2.56□□□□□ -2
NUP88-208ENST00000574087 INSL3P51460 131 aa2.56□□□□□ -2
NUP88-208ENST00000574087 CCL23P55773 120 aa2.56□□□□□ -2
NUP88-208ENST00000574087 RPS23P62266 143 aaKnown RBP2.56□□□□□ -2
NUP88-208ENST00000574087 CRADDP78560 199 aa2.56□□□□□ -2
NUP88-208ENST00000574087 ZNF90Q03938 601 aa2.56□□□□□ -2
NUP88-208ENST00000574087 HES1Q14469 280 aa2.56□□□□□ -2
NUP88-208ENST00000574087 ELOCQ15369 112 aa2.56□□□□□ -2
NUP88-208ENST00000574087 LINC00303Q3SY05 128 aa2.56□□□□□ -2
NUP88-208ENST00000574087 MRPL2Q5T653 305 aaKnown RBP2.56□□□□□ -2
NUP88-208ENST00000574087 C22orf39Q6P5X5 142 aa2.56□□□□□ -2
NUP88-208ENST00000574087 TMEM91Q6ZNR0 172 aa2.56□□□□□ -2
NUP88-208ENST00000574087 FAM19A3Q7Z5A8 133 aa2.56□□□□□ -2
NUP88-208ENST00000574087 TRAPPC6BQ86SZ2 158 aa2.56□□□□□ -2
NUP88-208ENST00000574087 LYPD1Q8N2G4 141 aa2.56□□□□□ -2
NUP88-208ENST00000574087 SLC22A24Q8N4F4 322 aa2.56□□□□□ -2
NUP88-208ENST00000574087 LINC00311Q8N616 119 aa2.56□□□□□ -2
NUP88-208ENST00000574087 TMEM75Q8N9X5 138 aa2.56□□□□□ -2
NUP88-208ENST00000574087 OR4B1Q8NGF8 309 aa2.56□□□□□ -2
NUP88-208ENST00000574087 OR4X2Q8NGF9 303 aa2.56□□□□□ -2
NUP88-208ENST00000574087 OTOSQ8NHW6 89 aa2.56□□□□□ -2
NUP88-208ENST00000574087 FAM3DQ96BQ1 224 aa2.56□□□□□ -2
NUP88-208ENST00000574087 FXYD5Q96DB9 178 aa2.56□□□□□ -2
NUP88-208ENST00000574087 MCEEQ96PE7 176 aa2.56□□□□□ -2
NUP88-208ENST00000574087 YPEL2Q96QA6 119 aa2.56□□□□□ -2
NUP88-208ENST00000574087 EIF5A2Q9GZV4 153 aaKnown RBP2.56□□□□□ -2
NUP88-208ENST00000574087 C21orf62Q9NYP8 219 aa2.56□□□□□ -2
NUP88-208ENST00000574087 TAAR3PQ9P1P4 343 aa2.56□□□□□ -2
NUP88-208ENST00000574087 ZNRD1Q9P1U0 126 aa2.56□□□□□ -2
NUP88-208ENST00000574087 DUOX1Q9NRD9 1551 aa2.56□□□□□ -2
NUP88-208ENST00000574087 PAPPAQ13219 1627 aa2.56□□□□□ -2
NUP88-208ENST00000574087 SCN7AQ01118 1682 aa2.56□□□□□ -2
NUP88-208ENST00000574087 C2orf16Q68DN1 1984 aa2.56□□□□□ -2
NUP88-208ENST00000574087 IGHV1-58A0A0C4DH39 117 aa2.55□□□□□ -2
NUP88-208ENST00000574087 A0A0J9YXV3 536 aa2.55□□□□□ -2
NUP88-208ENST00000574087 ZNF705FA8MVS1 300 aaPredicted RBP2.55□□□□□ -2
NUP88-208ENST00000574087 LGALS9O00182 355 aa2.55□□□□□ -2
NUP88-208ENST00000574087 SFT2D2O95562 160 aa2.55□□□□□ -2
NUP88-208ENST00000574087 TRGC1P0CF51 173 aa2.55□□□□□ -2
NUP88-208ENST00000574087 ZNF705DP0CH99 300 aaPredicted RBP2.55□□□□□ -2
NUP88-208ENST00000574087 ZNF705BP0CI00 300 aaPredicted RBP2.55□□□□□ -2
NUP88-208ENST00000574087 IGLC2P0DOY2 106 aa2.55□□□□□ -2
NUP88-208ENST00000574087 IGLC3P0DOY3 106 aa2.55□□□□□ -2
NUP88-208ENST00000574087 P2RX1P51575 399 aa2.55□□□□□ -2
NUP88-208ENST00000574087 FOXF1Q12946 379 aa2.55□□□□□ -2
NUP88-208ENST00000574087 DOCK1Q14185 1865 aa2.55□□□□□ -2
NUP88-208ENST00000574087 COL24A1Q17RW2 1714 aa2.55□□□□□ -2
NUP88-208ENST00000574087 FBXL19-AS1Q494R0 122 aa2.55□□□□□ -2
NUP88-208ENST00000574087 SPRNQ5BIV9 151 aa2.55□□□□□ -2
NUP88-208ENST00000574087 CLLU1OSQ5K130 101 aa2.55□□□□□ -2
NUP88-208ENST00000574087 NHSL1Q5SYE7 1610 aa2.55□□□□□ -2
NUP88-208ENST00000574087 AADACL3Q5VUY0 350 aa2.55□□□□□ -2
NUP88-208ENST00000574087 MAST2Q6P0Q8 1798 aa2.55□□□□□ -2
NUP88-208ENST00000574087 Q6ZS49 121 aa2.55□□□□□ -2
NUP88-208ENST00000574087 SHISA6Q6ZSJ9 500 aa2.55□□□□□ -2
NUP88-208ENST00000574087 SMIM5Q71RC9 77 aa2.55□□□□□ -2
NUP88-208ENST00000574087 SBF2Q86WG5 1849 aa2.55□□□□□ -2
NUP88-208ENST00000574087 C1orf174Q8IYL3 243 aa2.55□□□□□ -2
NUP88-208ENST00000574087 RPP25LQ8N5L8 163 aaKnown RBP2.55□□□□□ -2
NUP88-208ENST00000574087 OR5D16Q8NGK9 328 aa2.55□□□□□ -2
NUP88-208ENST00000574087 OR2T10Q8NGZ9 312 aa2.55□□□□□ -2
NUP88-208ENST00000574087 C2orf15Q8WU43 125 aaKnown RBP2.55□□□□□ -2
NUP88-208ENST00000574087 MAL2Q969L2 176 aa2.55□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms