RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 KIAA1109Q2LD37 5005 aa5.86□□□□□ -1.47
VPS53-214ENST00000572607 DNAH6Q9C0G6 4158 aa5.85□□□□□ -1.47
VPS53-214ENST00000572607 TRAV10A0A0B4J240 114 aa5.85□□□□□ -1.47
VPS53-214ENST00000572607 TEX48A0A1B0GUV7 120 aa5.85□□□□□ -1.47
VPS53-214ENST00000572607 C17orf112F2Z3M2 114 aa5.85□□□□□ -1.47
VPS53-214ENST00000572607 SPART-AS1P0CW21 52 aa5.85□□□□□ -1.47
VPS53-214ENST00000572607 HLA-DMBP28068 263 aa5.85□□□□□ -1.47
VPS53-214ENST00000572607 TCTAP57738 103 aa5.85□□□□□ -1.47
VPS53-214ENST00000572607 LINC00310P59036 64 aa5.85□□□□□ -1.47
VPS53-214ENST00000572607 CLINT1Q14677 625 aa5.85□□□□□ -1.47
VPS53-214ENST00000572607 GUK1Q16774 197 aa5.85□□□□□ -1.47
VPS53-214ENST00000572607 RRN3P1Q2M238 152 aa5.85□□□□□ -1.47
VPS53-214ENST00000572607 OR8A1Q8NGG7 326 aa5.85□□□□□ -1.47
VPS53-214ENST00000572607 PPP1R1CQ8WVI7 109 aa5.85□□□□□ -1.47
VPS53-214ENST00000572607 TMEM37Q8WXS4 190 aa5.85□□□□□ -1.47
VPS53-214ENST00000572607 LINC00476Q8WZB0 136 aa5.85□□□□□ -1.47
VPS53-214ENST00000572607 RPUSD4Q96CM3 377 aaKnown RBP5.85□□□□□ -1.47
VPS53-214ENST00000572607 IGF2BP2-AS1Q96M15 143 aa5.85□□□□□ -1.47
VPS53-214ENST00000572607 C17orf77Q96MU5 243 aa5.85□□□□□ -1.47
VPS53-214ENST00000572607 NPCDR1Q9BY65 106 aa5.85□□□□□ -1.47
VPS53-214ENST00000572607 OR5AC2Q9NZP5 309 aa5.85□□□□□ -1.47
VPS53-214ENST00000572607 ZNF705FA8MVS1 300 aaPredicted RBP5.84□□□□□ -1.47
VPS53-214ENST00000572607 BOLA2-SMG1P6H3BVE0 249 aa5.84□□□□□ -1.47
VPS53-214ENST00000572607 MRPS12O15235 138 aaKnown RBP5.84□□□□□ -1.47
VPS53-214ENST00000572607 PTTG1O95997 202 aa5.84□□□□□ -1.47
VPS53-214ENST00000572607 SNRPCP09234 159 aaKnown RBP5.84□□□□□ -1.47
VPS53-214ENST00000572607 ZNF705DP0CH99 300 aaPredicted RBP5.84□□□□□ -1.47
VPS53-214ENST00000572607 ZNF705BP0CI00 300 aaPredicted RBP5.84□□□□□ -1.47
VPS53-214ENST00000572607 HOXA5P20719 270 aa5.84□□□□□ -1.47
VPS53-214ENST00000572607 EMP1P54849 157 aa5.84□□□□□ -1.47
VPS53-214ENST00000572607 NHLH2Q02577 135 aa5.84□□□□□ -1.47
VPS53-214ENST00000572607 SPINK13Q1W4C9 94 aa5.84□□□□□ -1.47
VPS53-214ENST00000572607 Q6ZTC4 211 aa5.84□□□□□ -1.47
VPS53-214ENST00000572607 OR11H7Q8NGC8 314 aa5.84□□□□□ -1.47
VPS53-214ENST00000572607 OR10J6PQ8NGY7 276 aa5.84□□□□□ -1.47
VPS53-214ENST00000572607 CHAC2Q8WUX2 184 aa5.84□□□□□ -1.47
VPS53-214ENST00000572607 ZNF331Q9NQX6 463 aaPredicted RBP5.84□□□□□ -1.47
VPS53-214ENST00000572607 VPS13DQ5THJ4 4388 aa5.83□□□□□ -1.48
VPS53-214ENST00000572607 TRAV5A0A0B4J249 113 aa5.83□□□□□ -1.48
VPS53-214ENST00000572607 LOC102723971A0A1B0GUV8 181 aa5.83□□□□□ -1.48
VPS53-214ENST00000572607 A8MTW9 85 aa5.83□□□□□ -1.48
VPS53-214ENST00000572607 IGLL5B9A064 214 aa5.83□□□□□ -1.48
VPS53-214ENST00000572607 H0YIZ8 118 aa5.83□□□□□ -1.48
VPS53-214ENST00000572607 H3BTX0 84 aa5.83□□□□□ -1.48
VPS53-214ENST00000572607 M0R2Z0 102 aa5.83□□□□□ -1.48
VPS53-214ENST00000572607 MPC2O95563 127 aa5.83□□□□□ -1.48
VPS53-214ENST00000572607 IFNA5P01569 189 aa5.83□□□□□ -1.48
VPS53-214ENST00000572607 IGLC2P0DOY2 106 aa5.83□□□□□ -1.48
VPS53-214ENST00000572607 RPL12P30050 165 aaKnown RBP5.83□□□□□ -1.48
VPS53-214ENST00000572607 TSPOP30536 169 aa5.83□□□□□ -1.48
VPS53-214ENST00000572607 H2BFSP57053 126 aa5.83□□□□□ -1.48
VPS53-214ENST00000572607 AMTNQ6UX39 209 aa5.83□□□□□ -1.48
VPS53-214ENST00000572607 THAP6Q8TBB0 222 aa5.83□□□□□ -1.48
VPS53-214ENST00000572607 SCGB1C1Q8TD33 95 aa5.83□□□□□ -1.48
VPS53-214ENST00000572607 ATP5SQ99766 215 aa5.83□□□□□ -1.48
VPS53-214ENST00000572607 WDR61Q9GZS3 305 aaKnown RBP5.83□□□□□ -1.48
VPS53-214ENST00000572607 TMEM14CQ9P0S9 112 aa5.83□□□□□ -1.48
VPS53-214ENST00000572607 TIMM9Q9Y5J7 89 aa5.83□□□□□ -1.48
VPS53-214ENST00000572607 DEFB131BA0A096LNP1 70 aa5.82□□□□□ -1.48
VPS53-214ENST00000572607 H3BQ15 152 aa5.82□□□□□ -1.48
VPS53-214ENST00000572607 ZNF253O75346 499 aa5.82□□□□□ -1.48
VPS53-214ENST00000572607 CDKN1BP46527 198 aa5.82□□□□□ -1.48
VPS53-214ENST00000572607 C12orf74Q32Q52 190 aa5.82□□□□□ -1.48
VPS53-214ENST00000572607 MORN5Q5VZ52 161 aa5.82□□□□□ -1.48
VPS53-214ENST00000572607 ZNF767PQ75MW2 155 aa5.82□□□□□ -1.48
VPS53-214ENST00000572607 C1orf158Q8N1D5 194 aa5.82□□□□□ -1.48
VPS53-214ENST00000572607 TMEM256Q8N2U0 113 aa5.82□□□□□ -1.48
VPS53-214ENST00000572607 LINC01587Q99440 93 aa5.82□□□□□ -1.48
VPS53-214ENST00000572607 MRPL32Q9BYC8 188 aaKnown RBP5.82□□□□□ -1.48
VPS53-214ENST00000572607 MED28Q9H204 178 aa5.82□□□□□ -1.48
VPS53-214ENST00000572607 AAMDCQ9H7C9 122 aa5.82□□□□□ -1.48
VPS53-214ENST00000572607 MBD2Q9UBB5 411 aa5.82□□□□□ -1.48
VPS53-214ENST00000572607 CELA1Q9UNI1 258 aa5.82□□□□□ -1.48
VPS53-214ENST00000572607 PRELID1Q9Y255 219 aa5.82□□□□□ -1.48
VPS53-214ENST00000572607 HSPB11Q9Y547 144 aa5.82□□□□□ -1.48
VPS53-214ENST00000572607 ALG5Q9Y673 324 aa5.82□□□□□ -1.48
VPS53-214ENST00000572607 TRBV19A0A075B6N1 114 aa5.81□□□□□ -1.48
VPS53-214ENST00000572607 TRAV12-2A0A075B6T6 113 aa5.81□□□□□ -1.48
VPS53-214ENST00000572607 SLC17A3O00476 420 aa5.81□□□□□ -1.48
VPS53-214ENST00000572607 HIST1H1EP10412 219 aaKnown RBP5.81□□□□□ -1.48
VPS53-214ENST00000572607 LEPP41159 167 aa5.81□□□□□ -1.48
VPS53-214ENST00000572607 PDE6HQ13956 83 aa5.81□□□□□ -1.48
VPS53-214ENST00000572607 FAM222AQ5U5X8 452 aa5.81□□□□□ -1.48
VPS53-214ENST00000572607 LGALS9CQ6DKI2 356 aa5.81□□□□□ -1.48
VPS53-214ENST00000572607 BAP18Q8IXM2 172 aa5.81□□□□□ -1.48
VPS53-214ENST00000572607 MRPL53Q96EL3 112 aaKnown RBP5.81□□□□□ -1.48
VPS53-214ENST00000572607 NIPSNAP3BQ9BS92 247 aa5.81□□□□□ -1.48
VPS53-214ENST00000572607 SMIM3Q9BZL3 60 aa5.81□□□□□ -1.48
VPS53-214ENST00000572607 ZNF586Q9NXT0 402 aa5.81□□□□□ -1.48
VPS53-214ENST00000572607 YTHDF2Q9Y5A9 579 aaKnown RBP5.81□□□□□ -1.48
VPS53-214ENST00000572607 AGRNO00468 2067 aa5.81□□□□□ -1.48
VPS53-214ENST00000572607 IGHV4-4A0A075B6R2 117 aa5.8□□□□□ -1.48
VPS53-214ENST00000572607 ZNF705GA8MUZ8 300 aaPredicted RBP5.8□□□□□ -1.48
VPS53-214ENST00000572607 H7BYZ3 331 aa5.8□□□□□ -1.48
VPS53-214ENST00000572607 CRXO43186 299 aaPredicted RBP5.8□□□□□ -1.48
VPS53-214ENST00000572607 OR7C2O60412 319 aa5.8□□□□□ -1.48
VPS53-214ENST00000572607 PYYP10082 97 aa5.8□□□□□ -1.48
VPS53-214ENST00000572607 HTN1P15515 57 aa5.8□□□□□ -1.48
VPS53-214ENST00000572607 TAS2R45P59539 299 aa5.8□□□□□ -1.48
VPS53-214ENST00000572607 TAS2R60P59551 318 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms