RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 G3V4G9 280 aa4.85□□□□□ -1.63
VPS53-209ENST00000570771 TMEM250H0YL14 139 aa4.85□□□□□ -1.63
VPS53-209ENST00000570771 ISLRO14498 428 aa4.85□□□□□ -1.63
VPS53-209ENST00000570771 MRPS12O15235 138 aaKnown RBP4.85□□□□□ -1.63
VPS53-209ENST00000570771 SAP30O75446 220 aa4.85□□□□□ -1.63
VPS53-209ENST00000570771 EIF3GO75821 320 aaKnown RBP eCLIP4.85□□□□□ -1.63
VPS53-209ENST00000570771 CSN3P07498 182 aa4.85□□□□□ -1.63
VPS53-209ENST00000570771 IGLL1P15814 213 aa4.85□□□□□ -1.63
VPS53-209ENST00000570771 CD33P20138 364 aa4.85□□□□□ -1.63
VPS53-209ENST00000570771 CMC4P56277 68 aaPredicted RBP4.85□□□□□ -1.63
VPS53-209ENST00000570771 UBE2G2P60604 165 aa4.85□□□□□ -1.63
VPS53-209ENST00000570771 SNRPD3P62318 126 aaKnown RBP4.85□□□□□ -1.63
VPS53-209ENST00000570771 RANP62826 216 aaKnown RBP4.85□□□□□ -1.63
VPS53-209ENST00000570771 CCL20P78556 96 aa4.85□□□□□ -1.63
VPS53-209ENST00000570771 PRR31Q5SQ13 230 aa4.85□□□□□ -1.63
VPS53-209ENST00000570771 C9orf66Q5T8R8 295 aa4.85□□□□□ -1.63
VPS53-209ENST00000570771 LCN12Q6JVE5 192 aa4.85□□□□□ -1.63
VPS53-209ENST00000570771 C5orf17Q8NAS9 161 aa4.85□□□□□ -1.63
VPS53-209ENST00000570771 HIST1H2BAQ96A08 127 aa4.85□□□□□ -1.63
VPS53-209ENST00000570771 C16orf92Q96LL3 132 aa4.85□□□□□ -1.63
VPS53-209ENST00000570771 Q9H3A6 140 aa4.85□□□□□ -1.63
VPS53-209ENST00000570771 ZNF586Q9NXT0 402 aa4.85□□□□□ -1.63
VPS53-209ENST00000570771 MLXQ9UH92 298 aa4.85□□□□□ -1.63
VPS53-209ENST00000570771 IZUMO1RA6ND01 250 aa4.84□□□□□ -1.63
VPS53-209ENST00000570771 PGPA6NDG6 321 aa4.84□□□□□ -1.63
VPS53-209ENST00000570771 FBLL1A6NHQ2 334 aaKnown RBP4.84□□□□□ -1.63
VPS53-209ENST00000570771 H3BQ15 152 aa4.84□□□□□ -1.63
VPS53-209ENST00000570771 TSPAN4O14817 238 aa4.84□□□□□ -1.63
VPS53-209ENST00000570771 PRB2P02812 416 aaPredicted RBP4.84□□□□□ -1.63
VPS53-209ENST00000570771 SLC25A5P05141 298 aaKnown RBP4.84□□□□□ -1.63
VPS53-209ENST00000570771 S100A9P06702 114 aaKnown RBP4.84□□□□□ -1.63
VPS53-209ENST00000570771 KRTAP10-11P60412 298 aa4.84□□□□□ -1.63
VPS53-209ENST00000570771 SUMO1P63165 101 aaKnown RBP4.84□□□□□ -1.63
VPS53-209ENST00000570771 DEFB114Q30KQ6 69 aa4.84□□□□□ -1.63
VPS53-209ENST00000570771 OXLD1Q5BKU9 147 aa4.84□□□□□ -1.63
VPS53-209ENST00000570771 FAM90A2PQ658T7 463 aa4.84□□□□□ -1.63
VPS53-209ENST00000570771 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.84□□□□□ -1.63
VPS53-209ENST00000570771 MRPL53Q96EL3 112 aaKnown RBP4.84□□□□□ -1.63
VPS53-209ENST00000570771 C17orf77Q96MU5 243 aa4.84□□□□□ -1.63
VPS53-209ENST00000570771 SPAG8Q99932 426 aaPredicted RBP4.84□□□□□ -1.63
VPS53-209ENST00000570771 SLC35B3Q9H1N7 401 aa4.84□□□□□ -1.63
VPS53-209ENST00000570771 ZNF331Q9NQX6 463 aaPredicted RBP4.84□□□□□ -1.63
VPS53-209ENST00000570771 ZMAT5Q9UDW3 170 aaKnown RBP4.84□□□□□ -1.63
VPS53-209ENST00000570771 YTHDF2Q9Y5A9 579 aaKnown RBP4.84□□□□□ -1.63
VPS53-209ENST00000570771 SMAD5-AS1Q9Y6J3 95 aa4.84□□□□□ -1.63
VPS53-209ENST00000570771 IGKV3-7A0A075B6H7 116 aa4.83□□□□□ -1.64
VPS53-209ENST00000570771 GGTLC3B5MD39 225 aa4.83□□□□□ -1.64
VPS53-209ENST00000570771 KRBOX1C9JBD0 128 aa4.83□□□□□ -1.64
VPS53-209ENST00000570771 NDUFB4O95168 129 aa4.83□□□□□ -1.64
VPS53-209ENST00000570771 AKR1C3P42330 323 aa4.83□□□□□ -1.64
VPS53-209ENST00000570771 CNN1P51911 297 aaKnown RBP4.83□□□□□ -1.64
VPS53-209ENST00000570771 ICAM4Q14773 271 aa4.83□□□□□ -1.64
VPS53-209ENST00000570771 FAM74A3Q4VXF1 159 aa4.83□□□□□ -1.64
VPS53-209ENST00000570771 SOHLH1Q5JUK2 328 aa4.83□□□□□ -1.64
VPS53-209ENST00000570771 WFDC9Q8NEX5 89 aa4.83□□□□□ -1.64
VPS53-209ENST00000570771 C11orf52Q96A22 123 aa4.83□□□□□ -1.64
VPS53-209ENST00000570771 CITED4Q96RK1 184 aa4.83□□□□□ -1.64
VPS53-209ENST00000570771 RARRES2Q99969 163 aa4.83□□□□□ -1.64
VPS53-209ENST00000570771 ATG101Q9BSB4 218 aa4.83□□□□□ -1.64
VPS53-209ENST00000570771 MS4A6AQ9H2W1 248 aa4.83□□□□□ -1.64
VPS53-209ENST00000570771 EPDR1Q9UM22 224 aa4.83□□□□□ -1.64
VPS53-209ENST00000570771 RBAKDNA6NC62 111 aa4.82□□□□□ -1.64
VPS53-209ENST00000570771 FAM229AH3BQW9 127 aa4.82□□□□□ -1.64
VPS53-209ENST00000570771 H3BTX0 84 aa4.82□□□□□ -1.64
VPS53-209ENST00000570771 K7EQG2 157 aa4.82□□□□□ -1.64
VPS53-209ENST00000570771 SLC17A3O00476 420 aa4.82□□□□□ -1.64
VPS53-209ENST00000570771 PEX7O00628 323 aa4.82□□□□□ -1.64
VPS53-209ENST00000570771 IGLV1-51P01701 117 aa4.82□□□□□ -1.64
VPS53-209ENST00000570771 SRP19P09132 144 aaKnown RBP4.82□□□□□ -1.64
VPS53-209ENST00000570771 SNRPCP09234 159 aaKnown RBP4.82□□□□□ -1.64
VPS53-209ENST00000570771 PRB4P10163 310 aaPredicted RBP4.82□□□□□ -1.64
VPS53-209ENST00000570771 ATP5G3P48201 142 aa4.82□□□□□ -1.64
VPS53-209ENST00000570771 CEBPGP53567 150 aa4.82□□□□□ -1.64
VPS53-209ENST00000570771 CD81P60033 236 aa4.82□□□□□ -1.64
VPS53-209ENST00000570771 UBE2G1P62253 170 aa4.82□□□□□ -1.64
VPS53-209ENST00000570771 PSG3Q16557 428 aa4.82□□□□□ -1.64
VPS53-209ENST00000570771 GUCA2BQ16661 112 aa4.82□□□□□ -1.64
VPS53-209ENST00000570771 CD300EQ496F6 205 aaPredicted RBP4.82□□□□□ -1.64
VPS53-209ENST00000570771 SAMD5Q5TGI4 173 aa4.82□□□□□ -1.64
VPS53-209ENST00000570771 WFDC3Q8IUB2 231 aa4.82□□□□□ -1.64
VPS53-209ENST00000570771 CCDC28AQ8IWP9 274 aa4.82□□□□□ -1.64
VPS53-209ENST00000570771 TMEM61Q8N0U2 210 aa4.82□□□□□ -1.64
VPS53-209ENST00000570771 EXOC3-AS1Q8N2X6 119 aa4.82□□□□□ -1.64
VPS53-209ENST00000570771 GBGT1Q8N5D6 347 aa4.82□□□□□ -1.64
VPS53-209ENST00000570771 CYB561D1Q8N8Q1 229 aa4.82□□□□□ -1.64
VPS53-209ENST00000570771 ZNF738Q8NE65 137 aa4.82□□□□□ -1.64
VPS53-209ENST00000570771 OR10J6PQ8NGY7 276 aa4.82□□□□□ -1.64
VPS53-209ENST00000570771 FMC1Q96HJ9 113 aa4.82□□□□□ -1.64
VPS53-209ENST00000570771 TMEM218A2RU14 115 aa4.81□□□□□ -1.64
VPS53-209ENST00000570771 ZNF727A8MUV8 499 aa4.81□□□□□ -1.64
VPS53-209ENST00000570771 DIRC3C9JPN6 131 aa4.81□□□□□ -1.64
VPS53-209ENST00000570771 SOCS3O14543 225 aa4.81□□□□□ -1.64
VPS53-209ENST00000570771 DUSP14O95147 198 aaKnown RBP4.81□□□□□ -1.64
VPS53-209ENST00000570771 TCRAP04437 139 aa4.81□□□□□ -1.64
VPS53-209ENST00000570771 SFTA3P0C7M3 94 aa4.81□□□□□ -1.64
VPS53-209ENST00000570771 TFPI2P48307 235 aa4.81□□□□□ -1.64
VPS53-209ENST00000570771 TAS2R60P59551 318 aa4.81□□□□□ -1.64
VPS53-209ENST00000570771 EBLN2Q6P2I7 272 aa4.81□□□□□ -1.64
VPS53-209ENST00000570771 GOLT1AQ6ZVE7 132 aa4.81□□□□□ -1.64
VPS53-209ENST00000570771 SLC7A5P1Q8MH63 180 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms