RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 DEFB1P60022 68 aa7.69□□□□□ -1.18
VPS53-207ENST00000570510 LYZP61626 148 aa7.69□□□□□ -1.18
VPS53-207ENST00000570510 FAM78BQ5VT40 261 aa7.69□□□□□ -1.18
VPS53-207ENST00000570510 OR8I2Q8N0Y5 310 aa7.69□□□□□ -1.18
VPS53-207ENST00000570510 TMEM252Q8N6L7 170 aa7.69□□□□□ -1.18
VPS53-207ENST00000570510 PBDC1Q9BVG4 233 aa7.69□□□□□ -1.18
VPS53-207ENST00000570510 PLA2G2DQ9UNK4 145 aa7.69□□□□□ -1.18
VPS53-207ENST00000570510 ZNF705GA8MUZ8 300 aaPredicted RBP7.68□□□□□ -1.18
VPS53-207ENST00000570510 GOSR2O14653 212 aa7.68□□□□□ -1.18
VPS53-207ENST00000570510 BCAP31P51572 246 aa7.68□□□□□ -1.18
VPS53-207ENST00000570510 KRTAP10-1P60331 282 aa7.68□□□□□ -1.18
VPS53-207ENST00000570510 SLC38A11Q08AI6 406 aa7.68□□□□□ -1.18
VPS53-207ENST00000570510 RAB32Q13637 225 aa7.68□□□□□ -1.18
VPS53-207ENST00000570510 FCN2Q15485 313 aa7.68□□□□□ -1.18
VPS53-207ENST00000570510 Q6ZRG5 221 aa7.68□□□□□ -1.18
VPS53-207ENST00000570510 PPP1R14BQ96C90 147 aa7.68□□□□□ -1.18
VPS53-207ENST00000570510 SHANK2-AS3Q9BTD1 123 aa7.68□□□□□ -1.18
VPS53-207ENST00000570510 KCNIP2Q9NS61 270 aa7.68□□□□□ -1.18
VPS53-207ENST00000570510 UQCC1Q9NVA1 299 aa7.68□□□□□ -1.18
VPS53-207ENST00000570510 HIGD1AQ9Y241 93 aa7.68□□□□□ -1.18
VPS53-207ENST00000570510 WDR83OSQ9Y284 106 aa7.68□□□□□ -1.18
VPS53-207ENST00000570510 LSM5Q9Y4Y9 91 aaKnown RBP7.68□□□□□ -1.18
VPS53-207ENST00000570510 SMCO3A2RU48 225 aa7.67□□□□□ -1.18
VPS53-207ENST00000570510 H3BRN7 92 aa7.67□□□□□ -1.18
VPS53-207ENST00000570510 CCSO14618 274 aa7.67□□□□□ -1.18
VPS53-207ENST00000570510 LINC00869P0C866 280 aa7.67□□□□□ -1.18
VPS53-207ENST00000570510 GCSHP23434 173 aa7.67□□□□□ -1.18
VPS53-207ENST00000570510 RPL29P47914 159 aaKnown RBP7.67□□□□□ -1.18
VPS53-207ENST00000570510 B2MP61769 119 aa7.67□□□□□ -1.18
VPS53-207ENST00000570510 OR1L4Q8NGR5 311 aa7.67□□□□□ -1.18
VPS53-207ENST00000570510 IGF2BP2-AS1Q96M15 143 aa7.67□□□□□ -1.18
VPS53-207ENST00000570510 PFDN5Q99471 154 aa7.67□□□□□ -1.18
VPS53-207ENST00000570510 VPS13BQ7Z7G8 4022 aa7.67□□□□□ -1.18
VPS53-207ENST00000570510 FAT1Q14517 4588 aa7.66□□□□□ -1.18
VPS53-207ENST00000570510 TRAV26-1A0A087WT03 109 aa7.66□□□□□ -1.18
VPS53-207ENST00000570510 A0A087X0K7 114 aa7.66□□□□□ -1.18
VPS53-207ENST00000570510 KRTAP29-1A8MX34 341 aaPredicted RBP7.66□□□□□ -1.18
VPS53-207ENST00000570510 SOCS3O14543 225 aa7.66□□□□□ -1.18
VPS53-207ENST00000570510 AGPAT2O15120 278 aa7.66□□□□□ -1.18
VPS53-207ENST00000570510 SSNA1O43805 119 aa7.66□□□□□ -1.18
VPS53-207ENST00000570510 INSP01308 110 aa7.66□□□□□ -1.18
VPS53-207ENST00000570510 PLA2G1BP04054 148 aaKnown RBP7.66□□□□□ -1.18
VPS53-207ENST00000570510 HTN1P15515 57 aa7.66□□□□□ -1.18
VPS53-207ENST00000570510 S100A10P60903 97 aa7.66□□□□□ -1.18
VPS53-207ENST00000570510 HAMPP81172 84 aa7.66□□□□□ -1.18
VPS53-207ENST00000570510 UPK3BQ9BT76 320 aa7.66□□□□□ -1.18
VPS53-207ENST00000570510 SLC25A39Q9BZJ4 359 aaPredicted RBP7.66□□□□□ -1.18
VPS53-207ENST00000570510 RPRMQ9NS64 109 aa7.66□□□□□ -1.18
VPS53-207ENST00000570510 A0A0J9YY99 117 aa7.65□□□□□ -1.18
VPS53-207ENST00000570510 F6UB75 175 aa7.65□□□□□ -1.18
VPS53-207ENST00000570510 PRM2P04554 102 aa7.65□□□□□ -1.18
VPS53-207ENST00000570510 ORM2P19652 201 aa7.65□□□□□ -1.18
VPS53-207ENST00000570510 M6PRP20645 277 aa7.65□□□□□ -1.18
VPS53-207ENST00000570510 CAMLGP49069 296 aa7.65□□□□□ -1.18
VPS53-207ENST00000570510 RRAS2P62070 204 aaPredicted RBP7.65□□□□□ -1.18
VPS53-207ENST00000570510 FGL1Q08830 312 aa7.65□□□□□ -1.18
VPS53-207ENST00000570510 ARL16Q0P5N6 197 aa7.65□□□□□ -1.18
VPS53-207ENST00000570510 OR2F1Q13607 317 aa7.65□□□□□ -1.18
VPS53-207ENST00000570510 GUK1Q16774 197 aa7.65□□□□□ -1.18
VPS53-207ENST00000570510 ESRGQ1W209 222 aa7.65□□□□□ -1.18
VPS53-207ENST00000570510 OR10J6PQ8NGY7 276 aa7.65□□□□□ -1.18
VPS53-207ENST00000570510 PPP1R1CQ8WVI7 109 aa7.65□□□□□ -1.18
VPS53-207ENST00000570510 PARD6GQ9BYG4 376 aaPredicted RBP7.65□□□□□ -1.18
VPS53-207ENST00000570510 DNAJC4Q9NNZ3 241 aa7.65□□□□□ -1.18
VPS53-207ENST00000570510 MRPS16Q9Y3D3 137 aaKnown RBP7.65□□□□□ -1.18
VPS53-207ENST00000570510 FAM24AA6NFZ4 105 aa7.64□□□□□ -1.19
VPS53-207ENST00000570510 A8MTW9 85 aa7.64□□□□□ -1.19
VPS53-207ENST00000570510 ZNF253O75346 499 aa7.64□□□□□ -1.19
VPS53-207ENST00000570510 MPC2O95563 127 aa7.64□□□□□ -1.19
VPS53-207ENST00000570510 TSPOP30536 169 aa7.64□□□□□ -1.19
VPS53-207ENST00000570510 H2BFSP57053 126 aa7.64□□□□□ -1.19
VPS53-207ENST00000570510 NFE4Q86UQ8 179 aa7.64□□□□□ -1.19
VPS53-207ENST00000570510 BPIFA4PQ86YQ2 179 aa7.64□□□□□ -1.19
VPS53-207ENST00000570510 RXFP4Q8TDU9 374 aa7.64□□□□□ -1.19
VPS53-207ENST00000570510 DEFB104AQ8WTQ1 72 aa7.64□□□□□ -1.19
VPS53-207ENST00000570510 LINC01587Q99440 93 aa7.64□□□□□ -1.19
VPS53-207ENST00000570510 MGST2Q99735 147 aa7.64□□□□□ -1.19
VPS53-207ENST00000570510 SLC50A1Q9BRV3 221 aa7.64□□□□□ -1.19
VPS53-207ENST00000570510 ARL6Q9H0F7 186 aa7.64□□□□□ -1.19
VPS53-207ENST00000570510 ARV1Q9H2C2 271 aa7.64□□□□□ -1.19
VPS53-207ENST00000570510 DOK5Q9P104 306 aa7.64□□□□□ -1.19
VPS53-207ENST00000570510 TIMM8BQ9Y5J9 83 aaPredicted RBP7.64□□□□□ -1.19
VPS53-207ENST00000570510 A0A0J9YX75 114 aa7.63□□□□□ -1.19
VPS53-207ENST00000570510 CCNKO75909 580 aa7.63□□□□□ -1.19
VPS53-207ENST00000570510 CST7O76096 145 aa7.63□□□□□ -1.19
VPS53-207ENST00000570510 DUSP14O95147 198 aaKnown RBP7.63□□□□□ -1.19
VPS53-207ENST00000570510 OR5G3P0C626 314 aa7.63□□□□□ -1.19
VPS53-207ENST00000570510 OPCMLQ14982 345 aa7.63□□□□□ -1.19
VPS53-207ENST00000570510 RGS21Q2M5E4 152 aa7.63□□□□□ -1.19
VPS53-207ENST00000570510 LCN15Q6UWW0 184 aa7.63□□□□□ -1.19
VPS53-207ENST00000570510 TMEM182Q6ZP80 229 aaPredicted RBP7.63□□□□□ -1.19
VPS53-207ENST00000570510 C16orf92Q96LL3 132 aa7.63□□□□□ -1.19
VPS53-207ENST00000570510 SLC25A32Q9H2D1 315 aa7.63□□□□□ -1.19
VPS53-207ENST00000570510 PPP1R14DQ9NXH3 145 aa7.63□□□□□ -1.19
VPS53-207ENST00000570510 IGSF23A1L1A6 192 aa7.62□□□□□ -1.19
VPS53-207ENST00000570510 C17orf112F2Z3M2 114 aa7.62□□□□□ -1.19
VPS53-207ENST00000570510 M0R2Z0 102 aa7.62□□□□□ -1.19
VPS53-207ENST00000570510 SIVA1O15304 175 aa7.62□□□□□ -1.19
VPS53-207ENST00000570510 COX7A2P2O60397 106 aa7.62□□□□□ -1.19
VPS53-207ENST00000570510 DNAH10OSP0CZ25 163 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms