RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 DTD1Q8TEA8 209 aa11.88□□□□□ -0.51
CLK3-227ENST00000570296 TM2D2Q9BX73 214 aa11.88□□□□□ -0.51
CLK3-227ENST00000570296 MRPL32Q9BYC8 188 aaKnown RBP11.88□□□□□ -0.51
CLK3-227ENST00000570296 H3BRN7 92 aa11.87□□□□□ -0.51
CLK3-227ENST00000570296 CTDSPLO15194 276 aa11.87□□□□□ -0.51
CLK3-227ENST00000570296 SSBP1Q04837 148 aaKnown RBP11.87□□□□□ -0.51
CLK3-227ENST00000570296 MEF2DQ14814 521 aa11.87□□□□□ -0.51
CLK3-227ENST00000570296 Q6ZRU5 148 aa11.87□□□□□ -0.51
CLK3-227ENST00000570296 ZFAND1Q8TCF1 268 aa11.87□□□□□ -0.51
CLK3-227ENST00000570296 PCNPQ8WW12 178 aaKnown RBP11.87□□□□□ -0.51
CLK3-227ENST00000570296 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.86□□□□□ -0.51
CLK3-227ENST00000570296 GATA2P23769 480 aaPredicted RBP11.86□□□□□ -0.51
CLK3-227ENST00000570296 SELENOHQ8IZQ5 122 aaKnown RBP11.86□□□□□ -0.51
CLK3-227ENST00000570296 OR52I2Q8NH67 350 aa11.86□□□□□ -0.51
CLK3-227ENST00000570296 GLYATL2Q8WU03 294 aa11.86□□□□□ -0.51
CLK3-227ENST00000570296 SMIM4Q8WVI0 70 aa11.86□□□□□ -0.51
CLK3-227ENST00000570296 TMEM37Q8WXS4 190 aa11.86□□□□□ -0.51
CLK3-227ENST00000570296 TXNDC17Q9BRA2 123 aa11.86□□□□□ -0.51
CLK3-227ENST00000570296 SHANK2-AS3Q9BTD1 123 aa11.86□□□□□ -0.51
CLK3-227ENST00000570296 HSPB7Q9UBY9 170 aa11.86□□□□□ -0.51
CLK3-227ENST00000570296 MTFP1Q9UDX5 166 aa11.86□□□□□ -0.51
CLK3-227ENST00000570296 BOLA1Q9Y3E2 137 aa11.86□□□□□ -0.51
CLK3-227ENST00000570296 E5RGE8 158 aa11.85□□□□□ -0.51
CLK3-227ENST00000570296 ORM1P02763 201 aa11.85□□□□□ -0.51
CLK3-227ENST00000570296 SULT1A3P0DMM9 295 aa11.85□□□□□ -0.51
CLK3-227ENST00000570296 SULT1A4P0DMN0 295 aa11.85□□□□□ -0.51
CLK3-227ENST00000570296 LEPP41159 167 aa11.85□□□□□ -0.51
CLK3-227ENST00000570296 TCL1AP56279 114 aa11.85□□□□□ -0.51
CLK3-227ENST00000570296 ANXA2RQ3ZCQ2 193 aa11.85□□□□□ -0.51
CLK3-227ENST00000570296 LINC00299Q6ZSB3 139 aa11.85□□□□□ -0.51
CLK3-227ENST00000570296 OR1S1Q8NH92 325 aa11.85□□□□□ -0.51
CLK3-227ENST00000570296 ODF3Q96PU9 254 aa11.85□□□□□ -0.51
CLK3-227ENST00000570296 SOSTQ9BQB4 213 aa11.85□□□□□ -0.51
CLK3-227ENST00000570296 KLF12Q9Y4X4 402 aa11.85□□□□□ -0.51
CLK3-227ENST00000570296 J3KRW8 73 aa11.84□□□□□ -0.51
CLK3-227ENST00000570296 INPP1P49441 399 aa11.84□□□□□ -0.51
CLK3-227ENST00000570296 TIRAPP58753 221 aa11.84□□□□□ -0.51
CLK3-227ENST00000570296 TAS2R19P59542 299 aa11.84□□□□□ -0.51
CLK3-227ENST00000570296 ZNF431Q8TF32 576 aaPredicted RBP11.84□□□□□ -0.51
CLK3-227ENST00000570296 TEX13DA0A0J9YY54 714 aaPredicted RBP11.83□□□□□ -0.52
CLK3-227ENST00000570296 CXCL2P19875 107 aa11.83□□□□□ -0.52
CLK3-227ENST00000570296 TBPP20226 339 aa11.83□□□□□ -0.52
CLK3-227ENST00000570296 LAGE3Q14657 143 aa11.83□□□□□ -0.52
CLK3-227ENST00000570296 RNASE10Q5GAN6 216 aaKnown RBP11.83□□□□□ -0.52
CLK3-227ENST00000570296 TMEM268Q5VZI3 342 aa11.83□□□□□ -0.52
CLK3-227ENST00000570296 TEPPQ6URK8 271 aa11.83□□□□□ -0.52
CLK3-227ENST00000570296 ZBTB8BQ8NAP8 495 aaPredicted RBP11.83□□□□□ -0.52
CLK3-227ENST00000570296 TMEM229BQ8NBD8 167 aa11.83□□□□□ -0.52
CLK3-227ENST00000570296 OR13C8Q8NGS7 320 aa11.83□□□□□ -0.52
CLK3-227ENST00000570296 S100ZQ8WXG8 99 aa11.83□□□□□ -0.52
CLK3-227ENST00000570296 RBKSQ9H477 322 aa11.83□□□□□ -0.52
CLK3-227ENST00000570296 V9GYH0 126 aa11.83□□□□□ -0.52
CLK3-227ENST00000570296 TRGV4A0A0C4DH28 118 aa11.82□□□□□ -0.52
CLK3-227ENST00000570296 AP3S2P59780 193 aa11.82□□□□□ -0.52
CLK3-227ENST00000570296 TMEM182Q6ZP80 229 aaPredicted RBP11.82□□□□□ -0.52
CLK3-227ENST00000570296 IQCF2Q8IXL9 164 aa11.82□□□□□ -0.52
CLK3-227ENST00000570296 EIF4E3Q8N5X7 224 aaKnown RBP11.82□□□□□ -0.52
CLK3-227ENST00000570296 BLNKQ8WV28 456 aa11.82□□□□□ -0.52
CLK3-227ENST00000570296 MRPL16Q9NX20 251 aaKnown RBP11.82□□□□□ -0.52
CLK3-227ENST00000570296 RBFOX3A6NFN3 312 aa11.81□□□□□ -0.52
CLK3-227ENST00000570296 LECT2O14960 151 aa11.81□□□□□ -0.52
CLK3-227ENST00000570296 RAB3DO95716 219 aa11.81□□□□□ -0.52
CLK3-227ENST00000570296 RAP2BP61225 183 aa11.81□□□□□ -0.52
CLK3-227ENST00000570296 IBA57Q5T440 356 aaKnown RBP11.81□□□□□ -0.52
CLK3-227ENST00000570296 SH2D6Q7Z4S9 175 aa11.81□□□□□ -0.52
CLK3-227ENST00000570296 TOMM5Q8N4H5 51 aa11.81□□□□□ -0.52
CLK3-227ENST00000570296 SLC50A1Q9BRV3 221 aa11.81□□□□□ -0.52
CLK3-227ENST00000570296 SRRQ9GZT4 340 aa11.81□□□□□ -0.52
CLK3-227ENST00000570296 ZNF331Q9NQX6 463 aaPredicted RBP11.81□□□□□ -0.52
CLK3-227ENST00000570296 HIGD1AQ9Y241 93 aa11.81□□□□□ -0.52
CLK3-227ENST00000570296 LINC00854A0A1B0GVQ3 168 aa11.8□□□□□ -0.52
CLK3-227ENST00000570296 PRAC2D3DTV9 90 aa11.8□□□□□ -0.52
CLK3-227ENST00000570296 CD3DP04234 171 aa11.8□□□□□ -0.52
CLK3-227ENST00000570296 AKAIN1P0CW23 69 aa11.8□□□□□ -0.52
CLK3-227ENST00000570296 CT45A10P0DMU9 189 aa11.8□□□□□ -0.52
CLK3-227ENST00000570296 FAUP35544 74 aaKnown RBP11.8□□□□□ -0.52
CLK3-227ENST00000570296 RAB11AP62491 216 aa11.8□□□□□ -0.52
CLK3-227ENST00000570296 TRIQKQ629K1 86 aa11.8□□□□□ -0.52
CLK3-227ENST00000570296 LCN15Q6UWW0 184 aa11.8□□□□□ -0.52
CLK3-227ENST00000570296 TERB2Q8NHR7 220 aa11.8□□□□□ -0.52
CLK3-227ENST00000570296 NAA60Q9H7X0 242 aa11.8□□□□□ -0.52
CLK3-227ENST00000570296 CRYM-AS1A6NIL9 109 aa11.79□□□□□ -0.52
CLK3-227ENST00000570296 DISC1C4P0D8 188 aa11.79□□□□□ -0.52
CLK3-227ENST00000570296 C9JCJ5 164 aa11.79□□□□□ -0.52
CLK3-227ENST00000570296 SLC25A5P05141 298 aaKnown RBP11.79□□□□□ -0.52
CLK3-227ENST00000570296 CCR6P51684 374 aa11.79□□□□□ -0.52
CLK3-227ENST00000570296 PAXXQ9BUH6 204 aa11.79□□□□□ -0.52
CLK3-227ENST00000570296 TRAV8-6A0A0B4J262 113 aa11.78□□□□□ -0.52
CLK3-227ENST00000570296 ANKRD20A5PA0PJZ0 165 aa11.78□□□□□ -0.52
CLK3-227ENST00000570296 C7orf71A4D174 169 aa11.78□□□□□ -0.52
CLK3-227ENST00000570296 HYPMO75409 117 aa11.78□□□□□ -0.52
CLK3-227ENST00000570296 ZNF846Q147U1 533 aa11.78□□□□□ -0.52
CLK3-227ENST00000570296 SMCO1Q147U7 214 aa11.78□□□□□ -0.52
CLK3-227ENST00000570296 S100A7AQ86SG5 101 aa11.78□□□□□ -0.52
CLK3-227ENST00000570296 SLC25A31Q9H0C2 315 aa11.78□□□□□ -0.52
CLK3-227ENST00000570296 PMS2P5A8MQ11 134 aa11.77□□□□□ -0.53
CLK3-227ENST00000570296 MRPS12O15235 138 aaKnown RBP11.77□□□□□ -0.53
CLK3-227ENST00000570296 PPT1P50897 306 aa11.77□□□□□ -0.53
CLK3-227ENST00000570296 SCGB2B2Q4G0G5 96 aa11.77□□□□□ -0.53
CLK3-227ENST00000570296 C9orf47Q6ZRZ4 202 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms