RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 IGLC6P0CF74 106 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 BCL2P10415 239 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 PPIBP23284 216 aaKnown RBP2.01□□□□□ -2.09
VPS35-209ENST00000568642 CXCL5P42830 114 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 ATP5G2Q06055 141 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 BSPH1Q075Z2 132 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 FABP9Q0Z7S8 132 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 ZNF876PQ49A33 203 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 MPV17L2Q567V2 206 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 LCA10Q71F78 164 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 GKN2Q86XP6 184 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 ZDHHC22Q8N966 263 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 ZNF709Q8N972 641 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 Q8N9P0 234 aaPredicted RBP2.01□□□□□ -2.09
VPS35-209ENST00000568642 KLHL30-AS1Q8NEE0 82 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 OR5C1Q8NGR4 320 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 OR4A5Q8NH83 315 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 STAG3L4Q8TBR4 150 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 ZNF418Q8TF45 676 aaPredicted RBP2.01□□□□□ -2.09
VPS35-209ENST00000568642 H1FXQ92522 213 aaKnown RBP2.01□□□□□ -2.09
VPS35-209ENST00000568642 ABHD14BQ96IU4 210 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 PPP3R2Q96LZ3 170 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 SMIM14Q96QK8 99 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 TP53RKQ96S44 253 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 NMNAT3Q96T66 252 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 MGLLQ99685 303 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 ANAPC13Q9BS18 74 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 LXNQ9BS40 222 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 PRADC1Q9BSG0 188 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 OR2D2Q9H210 308 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 CST9LQ9H4G1 147 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 RPP21Q9H633 154 aaKnown RBP2.01□□□□□ -2.09
VPS35-209ENST00000568642 CACYBPQ9HB71 228 aaKnown RBP2.01□□□□□ -2.09
VPS35-209ENST00000568642 SCRT2Q9NQ03 307 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 NIT2Q9NQR4 276 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 FAIMQ9NVQ4 179 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 TAC3Q9UHF0 121 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 NINQ8N4C6 2090 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 IGHV3-43A0A0B4J1X8 118 aa2□□□□□ -2.09
VPS35-209ENST00000568642 TRAV17A0A0B4J275 112 aa2□□□□□ -2.09
VPS35-209ENST00000568642 DHRS12A0PJE2 317 aa2□□□□□ -2.09
VPS35-209ENST00000568642 PINLYPA6NC86 204 aa2□□□□□ -2.09
VPS35-209ENST00000568642 DPRXA6NFQ7 191 aa2□□□□□ -2.09
VPS35-209ENST00000568642 ZNF860A6NHJ4 632 aa2□□□□□ -2.09
VPS35-209ENST00000568642 C9JCJ5 164 aa2□□□□□ -2.09
VPS35-209ENST00000568642 AIPO00170 330 aa2□□□□□ -2.09
VPS35-209ENST00000568642 RBFOX2O43251 390 aaKnown RBP eCLIP2□□□□□ -2.09
VPS35-209ENST00000568642 BANF1O75531 89 aa2□□□□□ -2.09
VPS35-209ENST00000568642 IGHV3-11P01762 117 aa2□□□□□ -2.09
VPS35-209ENST00000568642 TRGC2P03986 189 aa2□□□□□ -2.09
VPS35-209ENST00000568642 ZNF32P17041 273 aa2□□□□□ -2.09
VPS35-209ENST00000568642 CRYBB3P26998 211 aa2□□□□□ -2.09
VPS35-209ENST00000568642 RNASE4P34096 147 aaKnown RBP2□□□□□ -2.09
VPS35-209ENST00000568642 VEGFCP49767 419 aa2□□□□□ -2.09
VPS35-209ENST00000568642 NCS1P62166 190 aa2□□□□□ -2.09
VPS35-209ENST00000568642 DIAPH2-AS1Q14236 149 aa2□□□□□ -2.09
VPS35-209ENST00000568642 TAF9Q16594 264 aa2□□□□□ -2.09
VPS35-209ENST00000568642 DEFB121Q5J5C9 76 aa2□□□□□ -2.09
VPS35-209ENST00000568642 ZNF678Q5SXM1 525 aa2□□□□□ -2.09
VPS35-209ENST00000568642 SLC25A42Q86VD7 318 aa2□□□□□ -2.09
VPS35-209ENST00000568642 H1FOOQ8IZA3 346 aaPredicted RBP2□□□□□ -2.09
VPS35-209ENST00000568642 SUMF2Q8NBJ7 301 aa2□□□□□ -2.09
VPS35-209ENST00000568642 RAB2BQ8WUD1 216 aa2□□□□□ -2.09
VPS35-209ENST00000568642 MBD3L1Q8WWY6 194 aa2□□□□□ -2.09
VPS35-209ENST00000568642 ARL11Q969Q4 196 aa2□□□□□ -2.09
VPS35-209ENST00000568642 MS4A6EQ96DS6 147 aa2□□□□□ -2.09
VPS35-209ENST00000568642 SPIN2AQ99865 258 aa2□□□□□ -2.09
VPS35-209ENST00000568642 VGLL1Q99990 258 aa2□□□□□ -2.09
VPS35-209ENST00000568642 SPIN2BQ9BPZ2 258 aa2□□□□□ -2.09
VPS35-209ENST00000568642 SLC25A21Q9BQT8 299 aaPredicted RBP2□□□□□ -2.09
VPS35-209ENST00000568642 MND1Q9BWT6 205 aa2□□□□□ -2.09
VPS35-209ENST00000568642 C1QTNF6Q9BXI9 259 aa2□□□□□ -2.09
VPS35-209ENST00000568642 MRPL16Q9NX20 251 aaKnown RBP2□□□□□ -2.09
VPS35-209ENST00000568642 MCTS1Q9ULC4 181 aaKnown RBP2□□□□□ -2.09
VPS35-209ENST00000568642 DNAH7Q8WXX0 4024 aa2□□□□□ -2.09
VPS35-209ENST00000568642 DOCK4Q8N1I0 1966 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 STARD9Q9P2P6 4700 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 DSCAML1Q8TD84 2053 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 HSPG2P98160 4391 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 TRBV20OR9-2A0A075B6H5 130 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 IGLV1-50A0A075B6I6 118 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 IGHV3OR15-7A0A075B7D8 119 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 TRAV38-1A0A0B4J264 116 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 IGHV3-66A0A0C4DH42 116 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 IGHV7-4-1A0A0J9YVY3 117 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 TRBV7-6A0A0J9YX20 115 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 FAM236AA0A1B0GUQ0 79 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 FAM236BA0A1B0GV22 79 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 B4DEV8 164 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 CCDC179H3BU77 68 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 J3QRK9 145 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 BCL2L11O43521 198 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 GSTZ1O43708 216 aaPredicted RBP1.99□□□□□ -2.09
VPS35-209ENST00000568642 PFDN1O60925 122 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 IFNA7P01567 189 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 IGLV1-44P01699 117 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 IGLV2-11P01706 119 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 ADRA2AP08913 450 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 LINC00869P0C866 280 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 LUZP6Q538Z0 58 aa1.99□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms