RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 ZNF331Q9NQX6 463 aaPredicted RBP2.51□□□□□ -2.01
VPS35-208ENST00000568612 LINC00527Q9UJ94 153 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 RPUSD1Q9UJJ7 312 aaKnown RBP2.51□□□□□ -2.01
VPS35-208ENST00000568612 PILRAQ9UKJ1 303 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 LTBP2Q14767 1821 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 NCOA6Q14686 2063 aaPredicted RBP2.51□□□□□ -2.01
VPS35-208ENST00000568612 TRBV7-3A0A075B6L6 115 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 SMIM26A0A096LP01 95 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 TRGV5A0A0B4J1U4 118 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 TRAV17A0A0B4J275 112 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 PIGBOS1A0A0B4J2F0 54 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 hADV29S1A0JD25 119 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 C17orf51A8MQB3 221 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 TMEM14DPA8MWL7 114 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 TMEM150CB9EJG8 249 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 H3BTX0 84 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 CCL22O00626 93 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 CST7O76096 145 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 NPYP01303 97 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 IGKV1D-33P01593 117 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 IGKV1-33P01594 117 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 P01737 135 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 CTLA4P16410 223 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 CDAP32320 146 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 SEC61BP60468 96 aaKnown RBP2.5□□□□□ -2.01
VPS35-208ENST00000568612 HBG1P69891 147 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 HBG2P69892 147 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 SLC48A1Q6P1K1 146 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 LYZL2Q7Z4W2 148 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 GTSCR1Q86UQ5 136 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 PCP2Q8IVA1 136 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 VKORC1L1Q8N0U8 176 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 RPP25LQ8N5L8 163 aaKnown RBP2.5□□□□□ -2.01
VPS35-208ENST00000568612 DRAM1Q8N682 238 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 WFDC11Q8NEX6 87 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 RFESDQ8TAC1 157 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 BRK1Q8WUW1 75 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 COPS9Q8WXC6 57 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 KLK6Q92876 244 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 IGF2BP2-AS1Q96M15 143 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 SLC25A2Q9BXI2 301 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 FGF22Q9HCT0 170 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 TAS2R4Q9NYW5 299 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 TAAR2Q9P1P5 351 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 C19orf25Q9UFG5 118 aaPredicted RBP2.5□□□□□ -2.01
VPS35-208ENST00000568612 LAMTOR3Q9UHA4 124 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 LSM7Q9UK45 103 aaKnown RBP2.5□□□□□ -2.01
VPS35-208ENST00000568612 ZNF256Q9Y2P7 627 aaPredicted RBP2.5□□□□□ -2.01
VPS35-208ENST00000568612 TCF20Q9UGU0 1960 aaKnown RBP2.5□□□□□ -2.01
VPS35-208ENST00000568612 COL4A2P08572 1712 aa2.5□□□□□ -2.01
VPS35-208ENST00000568612 MDC1Q14676 2089 aaKnown RBP2.49□□□□□ -2.01
VPS35-208ENST00000568612 SCN3AQ9NY46 2000 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 IGHV3OR15-7A0A075B7D8 119 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 TRBV7-6A0A0J9YX20 115 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 MYMXA0A1B0GTQ4 84 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 A0A1B0GXF2 115 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 C19orf71A6NCJ1 209 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 NCBP2LA6PVI3 153 aaKnown RBP2.49□□□□□ -2.01
VPS35-208ENST00000568612 FAM72CH0Y354 149 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 H3BMM0 161 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 LGALS9O00182 355 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 SLC25A20O43772 301 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 EFNA2O43921 213 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 CXCL8P10145 99 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 COX5AP20674 150 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 MYCNOSP40205 109 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 UBE2L3P68036 154 aaKnown RBP2.49□□□□□ -2.01
VPS35-208ENST00000568612 SRYQ05066 204 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 RPL18Q07020 188 aaKnown RBP2.49□□□□□ -2.01
VPS35-208ENST00000568612 ABCA11PQ4W5N1 156 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 WDR38Q5JTN6 314 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 LINC01590Q5TEZ4 76 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 FAM72AQ5TYM5 149 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 FAM72DQ6L9T8 149 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 MARCH3Q86UD3 253 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 FAM72BQ86X60 149 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 PDPNQ86YL7 162 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 DEFB106AQ8N104 65 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 SRSF12Q8WXF0 261 aaKnown RBP2.49□□□□□ -2.01
VPS35-208ENST00000568612 TAF15Q92804 592 aaKnown RBP eCLIP2.49□□□□□ -2.01
VPS35-208ENST00000568612 UBE2WQ96B02 151 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 MGST2Q99735 147 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 RTL8AQ9BWD3 113 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 LIME1Q9H400 295 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 ZNF442Q9H7R0 627 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 PLEKHA3Q9HB20 300 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 OTORQ9NRC9 128 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 AMMECR1Q9Y4X0 333 aaPredicted RBP2.49□□□□□ -2.01
VPS35-208ENST00000568612 EML5Q05BV3 1969 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 THADAQ6YHU6 1953 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 PCDH15Q96QU1 1955 aa2.49□□□□□ -2.01
VPS35-208ENST00000568612 DOCK7Q96N67 2140 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 PHF3Q92576 2039 aaKnown RBP2.48□□□□□ -2.01
VPS35-208ENST00000568612 TRBV19A0A075B6N1 114 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 TRBV25-1A0A075B6N4 114 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 A0A0A6YYD4 124 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 A0A1B0GTH9 108 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 UBE2L5PA0A1B0GUS4 154 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 H3BT86 120 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 M0R1B8 84 aa2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms