RNA–Protein interactions for RNA: ENST00000568034.1

COMMD4-222, Transcript of COMM domain containing 4, human

TSL 5

Gene COMMD4, Length 1,085 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-222	ENST00000568034	EIF5AL1	Q6IS14	154 aa	Known RBP	13.22	□□□□□ -0.29
COMMD4-222	ENST00000568034	DPPA3	Q6W0C5	159 aa		13.22	□□□□□ -0.29
COMMD4-222	ENST00000568034	STH	Q8IWL8	128 aa		13.22	□□□□□ -0.29
COMMD4-222	ENST00000568034	FAM213B	Q8TBF2	198 aa		13.22	□□□□□ -0.29
COMMD4-222	ENST00000568034	MBD3L1	Q8WWY6	194 aa		13.22	□□□□□ -0.29
COMMD4-222	ENST00000568034	RPUSD4	Q96CM3	377 aa	Known RBP	13.22	□□□□□ -0.29
COMMD4-222	ENST00000568034	MRPL53	Q96EL3	112 aa	Known RBP	13.22	□□□□□ -0.29
COMMD4-222	ENST00000568034	ASCL2	Q99929	193 aa		13.22	□□□□□ -0.29
COMMD4-222	ENST00000568034	MAP1LC3B	Q9GZQ8	125 aa		13.22	□□□□□ -0.29
COMMD4-222	ENST00000568034	FAM74A1	Q5RGS3	127 aa		13.21	□□□□□ -0.29
COMMD4-222	ENST00000568034		Q9H3A6	140 aa		13.21	□□□□□ -0.29
COMMD4-222	ENST00000568034	TMPRSS5	Q9H3S3	457 aa		13.21	□□□□□ -0.29
COMMD4-222	ENST00000568034	KIR2DL5B	A0A0G2JN68	375 aa		13.2	□□□□□ -0.3
COMMD4-222	ENST00000568034	KIR2DL5B	A0A0G2JPC4	375 aa		13.2	□□□□□ -0.3
COMMD4-222	ENST00000568034	GIG44	P09565	113 aa	Predicted RBP	13.2	□□□□□ -0.3
COMMD4-222	ENST00000568034	ZNF705D	P0CH99	300 aa	Predicted RBP	13.2	□□□□□ -0.3
COMMD4-222	ENST00000568034	ZNF705B	P0CI00	300 aa	Predicted RBP	13.2	□□□□□ -0.3
COMMD4-222	ENST00000568034	RAB5C	P51148	216 aa		13.2	□□□□□ -0.3
COMMD4-222	ENST00000568034	RAN	P62826	216 aa	Known RBP	13.2	□□□□□ -0.3
COMMD4-222	ENST00000568034	ICAM4	Q14773	271 aa		13.2	□□□□□ -0.3
COMMD4-222	ENST00000568034	KIR2DL5A	Q8N109	375 aa		13.2	□□□□□ -0.3
COMMD4-222	ENST00000568034	LYPD1	Q8N2G4	141 aa		13.2	□□□□□ -0.3
COMMD4-222	ENST00000568034	OR8A1	Q8NGG7	326 aa		13.2	□□□□□ -0.3
COMMD4-222	ENST00000568034	KIR2DL5B	Q8NHK3	375 aa		13.2	□□□□□ -0.3
COMMD4-222	ENST00000568034	CLUHP3	Q96NS8	147 aa		13.2	□□□□□ -0.3
COMMD4-222	ENST00000568034	TMEM167B	Q9NRX6	74 aa		13.2	□□□□□ -0.3
COMMD4-222	ENST00000568034	PRELID1	Q9Y255	219 aa		13.2	□□□□□ -0.3
COMMD4-222	ENST00000568034	CNN1	P51911	297 aa	Known RBP	13.19	□□□□□ -0.3
COMMD4-222	ENST00000568034	EBLN2	Q6P2I7	272 aa		13.19	□□□□□ -0.3
COMMD4-222	ENST00000568034	AMTN	Q6UX39	209 aa		13.19	□□□□□ -0.3
COMMD4-222	ENST00000568034	TM2D3	Q9BRN9	247 aa		13.19	□□□□□ -0.3
COMMD4-222	ENST00000568034	AAMDC	Q9H7C9	122 aa		13.19	□□□□□ -0.3
COMMD4-222	ENST00000568034	OTOR	Q9NRC9	128 aa		13.19	□□□□□ -0.3
COMMD4-222	ENST00000568034	APOC4	P55056	127 aa		13.18	□□□□□ -0.3
COMMD4-222	ENST00000568034	ALKAL2	Q6UX46	152 aa		13.18	□□□□□ -0.3
COMMD4-222	ENST00000568034	CSTL1	Q9H114	145 aa		13.18	□□□□□ -0.3
COMMD4-222	ENST00000568034	IGKV3-20	P01619	116 aa		13.17	□□□□□ -0.3
COMMD4-222	ENST00000568034	HIST1H1A	Q02539	215 aa	Predicted RBP	13.17	□□□□□ -0.3
COMMD4-222	ENST00000568034	IQCF2	Q8IXL9	164 aa		13.17	□□□□□ -0.3
COMMD4-222	ENST00000568034	OR4B1	Q8NGF8	309 aa		13.17	□□□□□ -0.3
COMMD4-222	ENST00000568034	SFT2D1	Q8WV19	159 aa		13.17	□□□□□ -0.3
COMMD4-222	ENST00000568034	PGP	A6NDG6	321 aa		13.16	□□□□□ -0.3
COMMD4-222	ENST00000568034	GGTLC3	B5MD39	225 aa		13.16	□□□□□ -0.3
COMMD4-222	ENST00000568034	DUSP14	O95147	198 aa	Known RBP	13.16	□□□□□ -0.3
COMMD4-222	ENST00000568034	H2AFB1	P0C5Y9	115 aa		13.16	□□□□□ -0.3
COMMD4-222	ENST00000568034	SLC35B3	Q9H1N7	401 aa		13.16	□□□□□ -0.3
COMMD4-222	ENST00000568034	YTHDF2	Q9Y5A9	579 aa	Known RBP	13.16	□□□□□ -0.3
COMMD4-222	ENST00000568034	IGKV2-40	A0A087WW87	121 aa	Predicted RBP	13.15	□□□□□ -0.3
COMMD4-222	ENST00000568034		A0A1B0GV50	99 aa		13.15	□□□□□ -0.3
COMMD4-222	ENST00000568034	NPIPB6	E9PJ23	425 aa		13.15	□□□□□ -0.3
COMMD4-222	ENST00000568034	UBE2C	O00762	179 aa		13.15	□□□□□ -0.3
COMMD4-222	ENST00000568034	IGKV2D-40	P01614	121 aa	Predicted RBP	13.15	□□□□□ -0.3
COMMD4-222	ENST00000568034	MORN3	Q6PF18	240 aa	Predicted RBP	13.15	□□□□□ -0.3
COMMD4-222	ENST00000568034	RETN	Q9HD89	108 aa		13.15	□□□□□ -0.3
COMMD4-222	ENST00000568034	TENM3	Q9P273	2699 aa		13.14	□□□□□ -0.31
COMMD4-222	ENST00000568034	TRAV1-1	A0A0B4J248	108 aa		13.14	□□□□□ -0.31
COMMD4-222	ENST00000568034		A0A1W2PRE2	83 aa		13.14	□□□□□ -0.31
COMMD4-222	ENST00000568034	FAM74A7	A6NL05	159 aa		13.14	□□□□□ -0.31
COMMD4-222	ENST00000568034	CA1	P00915	261 aa	Predicted RBP	13.14	□□□□□ -0.31
COMMD4-222	ENST00000568034	DIRC3	C9JPN6	131 aa		13.13	□□□□□ -0.31
COMMD4-222	ENST00000568034	FXYD7	P58549	80 aa		13.13	□□□□□ -0.31
COMMD4-222	ENST00000568034	UBE2G2	P60604	165 aa		13.13	□□□□□ -0.31
COMMD4-222	ENST00000568034	GNG5	P63218	68 aa		13.13	□□□□□ -0.31
COMMD4-222	ENST00000568034	CCL20	P78556	96 aa		13.13	□□□□□ -0.31
COMMD4-222	ENST00000568034	ERCC8	Q13216	396 aa		13.13	□□□□□ -0.31
COMMD4-222	ENST00000568034	DEFB135	Q30KP9	77 aa		13.13	□□□□□ -0.31
COMMD4-222	ENST00000568034		Q6ZWC4	215 aa		13.13	□□□□□ -0.31
COMMD4-222	ENST00000568034	CSNK1G2-AS1	Q8NCQ2	148 aa		13.13	□□□□□ -0.31
COMMD4-222	ENST00000568034	OR10J6P	Q8NGY7	276 aa		13.13	□□□□□ -0.31
COMMD4-222	ENST00000568034	SPATA25	Q9BR10	227 aa		13.13	□□□□□ -0.31
COMMD4-222	ENST00000568034	ZNF705E	A8MWA4	302 aa	Predicted RBP	13.12	□□□□□ -0.31
COMMD4-222	ENST00000568034	NHLRC4	P0CG21	123 aa	Predicted RBP	13.12	□□□□□ -0.31
COMMD4-222	ENST00000568034	CT45A10	P0DMU9	189 aa		13.12	□□□□□ -0.31
COMMD4-222	ENST00000568034	C9orf47	Q6ZRZ4	202 aa		13.12	□□□□□ -0.31
COMMD4-222	ENST00000568034	ARL6IP6	Q8N6S5	226 aa		13.12	□□□□□ -0.31
COMMD4-222	ENST00000568034	RXFP4	Q8TDU9	374 aa		13.12	□□□□□ -0.31
COMMD4-222	ENST00000568034	VGLL1	Q99990	258 aa		13.12	□□□□□ -0.31
COMMD4-222	ENST00000568034	OVOL2	Q9BRP0	275 aa		13.12	□□□□□ -0.31
COMMD4-222	ENST00000568034	AGPAT4-IT1	Q9H0P7	198 aa		13.12	□□□□□ -0.31
COMMD4-222	ENST00000568034	RBAKDN	A6NC62	111 aa		13.11	□□□□□ -0.31
COMMD4-222	ENST00000568034	CRX	O43186	299 aa	Predicted RBP	13.11	□□□□□ -0.31
COMMD4-222	ENST00000568034	SLC25A5	P05141	298 aa	Known RBP	13.11	□□□□□ -0.31
COMMD4-222	ENST00000568034	CSN1S1	P47710	185 aa		13.11	□□□□□ -0.31
COMMD4-222	ENST00000568034	SUMO1	P63165	101 aa	Known RBP	13.11	□□□□□ -0.31
COMMD4-222	ENST00000568034	CCDC28A	Q8IWP9	274 aa		13.11	□□□□□ -0.31
COMMD4-222	ENST00000568034	C5orf17	Q8NAS9	161 aa		13.11	□□□□□ -0.31
COMMD4-222	ENST00000568034	RNF183	Q96D59	192 aa		13.11	□□□□□ -0.31
COMMD4-222	ENST00000568034	FAM19A4	Q96LR4	140 aa		13.11	□□□□□ -0.31
COMMD4-222	ENST00000568034	XCL2	Q9UBD3	114 aa		13.11	□□□□□ -0.31
COMMD4-222	ENST00000568034	ARL2-SNX15	V9GYD0	113 aa		13.11	□□□□□ -0.31
COMMD4-222	ENST00000568034		M0R2Z0	102 aa		13.1	□□□□□ -0.31
COMMD4-222	ENST00000568034	NUTF2	P61970	127 aa	Known RBP	13.1	□□□□□ -0.31
COMMD4-222	ENST00000568034	SPINK13	Q1W4C9	94 aa		13.1	□□□□□ -0.31
COMMD4-222	ENST00000568034	TEX261	Q6UWH6	196 aa		13.1	□□□□□ -0.31
COMMD4-222	ENST00000568034	CMTM2	Q8TAZ6	248 aa		13.1	□□□□□ -0.31
COMMD4-222	ENST00000568034	ODF3	Q96PU9	254 aa		13.1	□□□□□ -0.31
COMMD4-222	ENST00000568034	RPH3AL	Q9UNE2	315 aa		13.1	□□□□□ -0.31
COMMD4-222	ENST00000568034	TP53TG1	Q9Y2A0	90 aa		13.1	□□□□□ -0.31
COMMD4-222	ENST00000568034	NBEAL2	Q6ZNJ1	2754 aa		13.1	□□□□□ -0.31
COMMD4-222	ENST00000568034	COL7A1	Q02388	2944 aa		13.1	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 86.9 ms