RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 ZNF738Q8NE65 137 aa7.11□□□□□ -1.27
CLK3-220ENST00000567992 ZNF503Q96F45 646 aa7.11□□□□□ -1.27
CLK3-220ENST00000567992 RARRES2Q99969 163 aa7.11□□□□□ -1.27
CLK3-220ENST00000567992 MRPL32Q9BYC8 188 aaKnown RBP7.11□□□□□ -1.27
CLK3-220ENST00000567992 FUT9Q9Y231 359 aa7.11□□□□□ -1.27
CLK3-220ENST00000567992 TIMM9Q9Y5J7 89 aa7.11□□□□□ -1.27
CLK3-220ENST00000567992 ZNF705FA8MVS1 300 aaPredicted RBP7.1□□□□□ -1.27
CLK3-220ENST00000567992 PRAC2D3DTV9 90 aa7.1□□□□□ -1.27
CLK3-220ENST00000567992 ZNF253O75346 499 aa7.1□□□□□ -1.27
CLK3-220ENST00000567992 NMBP08949 121 aa7.1□□□□□ -1.27
CLK3-220ENST00000567992 HIST1H1EP10412 219 aaKnown RBP7.1□□□□□ -1.27
CLK3-220ENST00000567992 FXYD7P58549 80 aa7.1□□□□□ -1.27
CLK3-220ENST00000567992 PSG9Q00887 426 aa7.1□□□□□ -1.27
CLK3-220ENST00000567992 GUK1Q16774 197 aa7.1□□□□□ -1.27
CLK3-220ENST00000567992 ZNF705AQ6ZN79 300 aaPredicted RBP7.1□□□□□ -1.27
CLK3-220ENST00000567992 OR4B1Q8NGF8 309 aa7.1□□□□□ -1.27
CLK3-220ENST00000567992 OR8A1Q8NGG7 326 aa7.1□□□□□ -1.27
CLK3-220ENST00000567992 SCGB1C1Q8TD33 95 aa7.1□□□□□ -1.27
CLK3-220ENST00000567992 FXYD5Q96DB9 178 aa7.1□□□□□ -1.27
CLK3-220ENST00000567992 C11orf68Q9H3H3 251 aaKnown RBP7.1□□□□□ -1.27
CLK3-220ENST00000567992 XCL2Q9UBD3 114 aa7.1□□□□□ -1.27
CLK3-220ENST00000567992 CRXO43186 299 aaPredicted RBP7.09□□□□□ -1.27
CLK3-220ENST00000567992 EIF3GO75821 320 aaKnown RBP eCLIP7.09□□□□□ -1.27
CLK3-220ENST00000567992 M6PRP20645 277 aa7.09□□□□□ -1.27
CLK3-220ENST00000567992 ATP6V0CP27449 155 aa7.09□□□□□ -1.27
CLK3-220ENST00000567992 RAB2AP61019 212 aa7.09□□□□□ -1.27
CLK3-220ENST00000567992 NUTF2P61970 127 aaKnown RBP7.09□□□□□ -1.27
CLK3-220ENST00000567992 PDE6HQ13956 83 aa7.09□□□□□ -1.27
CLK3-220ENST00000567992 ZNF266Q14584 549 aa7.09□□□□□ -1.27
CLK3-220ENST00000567992 ZFAND6Q6FIF0 208 aa7.09□□□□□ -1.27
CLK3-220ENST00000567992 EIF4E3Q8N5X7 224 aaKnown RBP7.09□□□□□ -1.27
CLK3-220ENST00000567992 HSD17B11Q8NBQ5 300 aa7.09□□□□□ -1.27
CLK3-220ENST00000567992 OR2G3Q8NGZ4 309 aa7.09□□□□□ -1.27
CLK3-220ENST00000567992 IL17DQ8TAD2 202 aa7.09□□□□□ -1.27
CLK3-220ENST00000567992 LRRC20Q8TCA0 184 aa7.09□□□□□ -1.27
CLK3-220ENST00000567992 RPUSD4Q96CM3 377 aaKnown RBP7.09□□□□□ -1.27
CLK3-220ENST00000567992 PHYHIPLQ96FC7 376 aa7.09□□□□□ -1.27
CLK3-220ENST00000567992 PSMG3Q9BT73 122 aaPredicted RBP7.09□□□□□ -1.27
CLK3-220ENST00000567992 C1QTNF4Q9BXJ3 329 aa7.09□□□□□ -1.27
CLK3-220ENST00000567992 HYDINQ4G0P3 5121 aa7.09□□□□□ -1.28
CLK3-220ENST00000567992 IGHV4-28A0A0C4DH34 117 aa7.08□□□□□ -1.28
CLK3-220ENST00000567992 M0R3E3 92 aa7.08□□□□□ -1.28
CLK3-220ENST00000567992 DEFB4AO15263 64 aa7.08□□□□□ -1.28
CLK3-220ENST00000567992 BCL2L11O43521 198 aa7.08□□□□□ -1.28
CLK3-220ENST00000567992 DUSP14O95147 198 aaKnown RBP7.08□□□□□ -1.28
CLK3-220ENST00000567992 RBMY1A1P0DJD3 496 aaKnown RBP7.08□□□□□ -1.28
CLK3-220ENST00000567992 RBMY1CP0DJD4 496 aa7.08□□□□□ -1.28
CLK3-220ENST00000567992 RHOBP62745 196 aa7.08□□□□□ -1.28
CLK3-220ENST00000567992 HIST1H1AQ02539 215 aaPredicted RBP7.08□□□□□ -1.28
CLK3-220ENST00000567992 RBMY1FQ15415 496 aaKnown RBP7.08□□□□□ -1.28
CLK3-220ENST00000567992 RPL7L1Q6DKI1 246 aaKnown RBP7.08□□□□□ -1.28
CLK3-220ENST00000567992 INO80EQ8NBZ0 244 aaPredicted RBP7.08□□□□□ -1.28
CLK3-220ENST00000567992 SH3BGRL3Q9H299 93 aa7.08□□□□□ -1.28
CLK3-220ENST00000567992 OR51M1Q9H341 326 aa7.08□□□□□ -1.28
CLK3-220ENST00000567992 CYTL1Q9NRR1 136 aa7.08□□□□□ -1.28
CLK3-220ENST00000567992 KANTRA0A1W2PQU2 76 aa7.07□□□□□ -1.28
CLK3-220ENST00000567992 M0R2Z0 102 aa7.07□□□□□ -1.28
CLK3-220ENST00000567992 OR10J4P0C629 311 aa7.07□□□□□ -1.28
CLK3-220ENST00000567992 MIFP14174 115 aa7.07□□□□□ -1.28
CLK3-220ENST00000567992 SPINK13Q1W4C9 94 aa7.07□□□□□ -1.28
CLK3-220ENST00000567992 ALKAL2Q6UX46 152 aa7.07□□□□□ -1.28
CLK3-220ENST00000567992 C1orf158Q8N1D5 194 aa7.07□□□□□ -1.28
CLK3-220ENST00000567992 EXOC3-AS1Q8N2X6 119 aa7.07□□□□□ -1.28
CLK3-220ENST00000567992 BLNKQ8WV28 456 aa7.07□□□□□ -1.28
CLK3-220ENST00000567992 MRPL53Q96EL3 112 aaKnown RBP7.07□□□□□ -1.28
CLK3-220ENST00000567992 PAXXQ9BUH6 204 aa7.07□□□□□ -1.28
CLK3-220ENST00000567992 VPS13DQ5THJ4 4388 aa7.06□□□□□ -1.28
CLK3-220ENST00000567992 KRBOX1C9JBD0 128 aa7.06□□□□□ -1.28
CLK3-220ENST00000567992 NPIPB6E9PJ23 425 aa7.06□□□□□ -1.28
CLK3-220ENST00000567992 OR7C2O60412 319 aa7.06□□□□□ -1.28
CLK3-220ENST00000567992 NBEAP1P0C6P0 100 aa7.06□□□□□ -1.28
CLK3-220ENST00000567992 UBE2L3P68036 154 aaKnown RBP7.06□□□□□ -1.28
CLK3-220ENST00000567992 ACOT6Q3I5F7 207 aaPredicted RBP7.06□□□□□ -1.28
CLK3-220ENST00000567992 KHDC3LQ587J8 217 aa7.06□□□□□ -1.28
CLK3-220ENST00000567992 FAM122CQ6P4D5 195 aa7.06□□□□□ -1.28
CLK3-220ENST00000567992 SSX7Q7RTT5 188 aa7.06□□□□□ -1.28
CLK3-220ENST00000567992 BAP18Q8IXM2 172 aa7.06□□□□□ -1.28
CLK3-220ENST00000567992 RPP25LQ8N5L8 163 aaKnown RBP7.06□□□□□ -1.28
CLK3-220ENST00000567992 OR10G4Q8NGN3 311 aa7.06□□□□□ -1.28
CLK3-220ENST00000567992 OR10G9Q8NGN4 311 aa7.06□□□□□ -1.28
CLK3-220ENST00000567992 OR10G7Q8NGN6 311 aa7.06□□□□□ -1.28
CLK3-220ENST00000567992 STOML3Q8TAV4 291 aa7.06□□□□□ -1.28
CLK3-220ENST00000567992 RNF141Q8WVD5 230 aa7.06□□□□□ -1.28
CLK3-220ENST00000567992 PCNPQ8WW12 178 aaKnown RBP7.06□□□□□ -1.28
CLK3-220ENST00000567992 IGF2BP2-AS1Q96M15 143 aa7.06□□□□□ -1.28
CLK3-220ENST00000567992 NEU1Q99519 415 aa7.06□□□□□ -1.28
CLK3-220ENST00000567992 TRAV12-2A0A075B6T6 113 aa7.05□□□□□ -1.28
CLK3-220ENST00000567992 INSP01308 110 aa7.05□□□□□ -1.28
CLK3-220ENST00000567992 AMBPP02760 352 aa7.05□□□□□ -1.28
CLK3-220ENST00000567992 STAG3L2P0CL84 134 aa7.05□□□□□ -1.28
CLK3-220ENST00000567992 STAG3L3P0CL85 134 aa7.05□□□□□ -1.28
CLK3-220ENST00000567992 CT45A10P0DMU9 189 aa7.05□□□□□ -1.28
CLK3-220ENST00000567992 NANOS2P60321 138 aaKnown RBP7.05□□□□□ -1.28
CLK3-220ENST00000567992 SERF2P84101 59 aa7.05□□□□□ -1.28
CLK3-220ENST00000567992 ICAM4Q14773 271 aa7.05□□□□□ -1.28
CLK3-220ENST00000567992 KIR3DS1Q14943 382 aa7.05□□□□□ -1.28
CLK3-220ENST00000567992 ARPC5LQ9BPX5 153 aa7.05□□□□□ -1.28
CLK3-220ENST00000567992 CELA1Q9UNI1 258 aa7.05□□□□□ -1.28
CLK3-220ENST00000567992 PRELID1Q9Y255 219 aa7.05□□□□□ -1.28
CLK3-220ENST00000567992 BORCS7-ASMTA0A0B4J1R7 106 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms