RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 H2BFSP57053 126 aa10.49□□□□□ -0.73
CLN3-213ENST00000565047 TAS2R60P59551 318 aa10.49□□□□□ -0.73
CLN3-213ENST00000565047 RHOBP62745 196 aa10.49□□□□□ -0.73
CLN3-213ENST00000565047 HBG1P69891 147 aa10.49□□□□□ -0.73
CLN3-213ENST00000565047 HBG2P69892 147 aa10.49□□□□□ -0.73
CLN3-213ENST00000565047 GUK1Q16774 197 aa10.49□□□□□ -0.73
CLN3-213ENST00000565047 STX12Q86Y82 276 aa10.49□□□□□ -0.73
CLN3-213ENST00000565047 TMEM256Q8N2U0 113 aa10.49□□□□□ -0.73
CLN3-213ENST00000565047 PARD6GQ9BYG4 376 aaPredicted RBP10.49□□□□□ -0.73
CLN3-213ENST00000565047 OR5AC2Q9NZP5 309 aa10.49□□□□□ -0.73
CLN3-213ENST00000565047 TMEM14CQ9P0S9 112 aa10.49□□□□□ -0.73
CLN3-213ENST00000565047 PXMP4Q9Y6I8 212 aa10.49□□□□□ -0.73
CLN3-213ENST00000565047 TRBV19A0A075B6N1 114 aa10.48□□□□□ -0.73
CLN3-213ENST00000565047 INMT-MINDY4F8WBC2 141 aa10.48□□□□□ -0.73
CLN3-213ENST00000565047 BAXQ07812 192 aa10.48□□□□□ -0.73
CLN3-213ENST00000565047 GCSAMLQ5JQS6 135 aa10.48□□□□□ -0.73
CLN3-213ENST00000565047 TMEM88Q6PEY1 159 aa10.48□□□□□ -0.73
CLN3-213ENST00000565047 ENKURQ8TC29 256 aa10.48□□□□□ -0.73
CLN3-213ENST00000565047 RNASE8Q8TDE3 154 aaKnown RBP10.48□□□□□ -0.73
CLN3-213ENST00000565047 PFDN5Q99471 154 aa10.48□□□□□ -0.73
CLN3-213ENST00000565047 NPCDR1Q9BY65 106 aa10.48□□□□□ -0.73
CLN3-213ENST00000565047 GPN1Q9HCN4 374 aaPredicted RBP10.48□□□□□ -0.73
CLN3-213ENST00000565047 NPIPB6E9PJ23 425 aa10.47□□□□□ -0.73
CLN3-213ENST00000565047 PRAF2O60831 178 aa10.47□□□□□ -0.73
CLN3-213ENST00000565047 MPDU1O75352 247 aa10.47□□□□□ -0.73
CLN3-213ENST00000565047 CT45A10P0DMU9 189 aa10.47□□□□□ -0.73
CLN3-213ENST00000565047 FGF7P21781 194 aa10.47□□□□□ -0.73
CLN3-213ENST00000565047 DAD1P61803 113 aa10.47□□□□□ -0.73
CLN3-213ENST00000565047 FCN2Q15485 313 aa10.47□□□□□ -0.73
CLN3-213ENST00000565047 FAM167A-AS1Q96KT0 104 aa10.47□□□□□ -0.73
CLN3-213ENST00000565047 LINC01587Q99440 93 aa10.47□□□□□ -0.73
CLN3-213ENST00000565047 E5RGE8 158 aa10.46□□□□□ -0.73
CLN3-213ENST00000565047 GFI1BQ5VTD9 330 aa10.46□□□□□ -0.73
CLN3-213ENST00000565047 OR5C1Q8NGR4 320 aa10.46□□□□□ -0.73
CLN3-213ENST00000565047 MRPL53Q96EL3 112 aaKnown RBP10.46□□□□□ -0.73
CLN3-213ENST00000565047 FAM19A4Q96LR4 140 aa10.46□□□□□ -0.73
CLN3-213ENST00000565047 ODF3Q96PU9 254 aa10.46□□□□□ -0.73
CLN3-213ENST00000565047 C20orf144Q9BQM9 153 aa10.46□□□□□ -0.73
CLN3-213ENST00000565047 H7BYZ3 331 aa10.45□□□□□ -0.74
CLN3-213ENST00000565047 M0R3E3 92 aa10.45□□□□□ -0.74
CLN3-213ENST00000565047 PYYP10082 97 aa10.45□□□□□ -0.74
CLN3-213ENST00000565047 HIST1H1EP10412 219 aaKnown RBP10.45□□□□□ -0.74
CLN3-213ENST00000565047 HTN3P15516 51 aa10.45□□□□□ -0.74
CLN3-213ENST00000565047 LGALS9BQ3B8N2 356 aa10.45□□□□□ -0.74
CLN3-213ENST00000565047 RNF212Q495C1 297 aa10.45□□□□□ -0.74
CLN3-213ENST00000565047 Q6ZR54 194 aa10.45□□□□□ -0.74
CLN3-213ENST00000565047 LINC00612Q8N6U2 182 aa10.45□□□□□ -0.74
CLN3-213ENST00000565047 OR10J6PQ8NGY7 276 aa10.45□□□□□ -0.74
CLN3-213ENST00000565047 THAP6Q8TBB0 222 aa10.45□□□□□ -0.74
CLN3-213ENST00000565047 SLC25A2Q9BXI2 301 aa10.45□□□□□ -0.74
CLN3-213ENST00000565047 A0A1B0GVY2 172 aa10.44□□□□□ -0.74
CLN3-213ENST00000565047 CBY3A6NI87 242 aa10.44□□□□□ -0.74
CLN3-213ENST00000565047 RTL8CO15255 209 aa10.44□□□□□ -0.74
CLN3-213ENST00000565047 DEFB130BP0DP73 79 aa10.44□□□□□ -0.74
CLN3-213ENST00000565047 DEFB130AP0DP74 79 aa10.44□□□□□ -0.74
CLN3-213ENST00000565047 CYCSP99999 105 aaKnown RBP10.44□□□□□ -0.74
CLN3-213ENST00000565047 PDE6HQ13956 83 aa10.44□□□□□ -0.74
CLN3-213ENST00000565047 ZNF493Q6ZR52 646 aa10.44□□□□□ -0.74
CLN3-213ENST00000565047 TMEM263Q8WUH6 116 aaKnown RBP10.44□□□□□ -0.74
CLN3-213ENST00000565047 C16orf74Q96GX8 76 aa10.44□□□□□ -0.74
CLN3-213ENST00000565047 WDR61Q9GZS3 305 aaKnown RBP10.44□□□□□ -0.74
CLN3-213ENST00000565047 SLC25A31Q9H0C2 315 aa10.44□□□□□ -0.74
CLN3-213ENST00000565047 PPP1R14DQ9NXH3 145 aa10.44□□□□□ -0.74
CLN3-213ENST00000565047 RLN2P04090 185 aa10.43□□□□□ -0.74
CLN3-213ENST00000565047 LRRC37A5PQ49AS3 106 aa10.43□□□□□ -0.74
CLN3-213ENST00000565047 MIR17HGQ75NE6 70 aa10.43□□□□□ -0.74
CLN3-213ENST00000565047 PPP1R1CQ8WVI7 109 aa10.43□□□□□ -0.74
CLN3-213ENST00000565047 TIMM8BQ9Y5J9 83 aaPredicted RBP10.43□□□□□ -0.74
CLN3-213ENST00000565047 KLLNB2CW77 178 aa10.42□□□□□ -0.74
CLN3-213ENST00000565047 ZNF324O75467 553 aaPredicted RBP10.42□□□□□ -0.74
CLN3-213ENST00000565047 HTN1P15515 57 aa10.42□□□□□ -0.74
CLN3-213ENST00000565047 ERCC8Q13216 396 aa10.42□□□□□ -0.74
CLN3-213ENST00000565047 CLINT1Q14677 625 aa10.42□□□□□ -0.74
CLN3-213ENST00000565047 LINC00336Q6ZUF6 198 aa10.42□□□□□ -0.74
CLN3-213ENST00000565047 EXOC3-AS1Q8N2X6 119 aa10.42□□□□□ -0.74
CLN3-213ENST00000565047 ZNF503Q96F45 646 aa10.42□□□□□ -0.74
CLN3-213ENST00000565047 AGPAT4-IT1Q9H0P7 198 aa10.42□□□□□ -0.74
CLN3-213ENST00000565047 NOP10Q9NPE3 64 aaKnown RBP10.42□□□□□ -0.74
CLN3-213ENST00000565047 NACAE9PAV3 2078 aa10.42□□□□□ -0.74
CLN3-213ENST00000565047 MPC2O95563 127 aa10.41□□□□□ -0.74
CLN3-213ENST00000565047 C15orf53Q8NAA6 179 aa10.41□□□□□ -0.74
CLN3-213ENST00000565047 FXYD5Q96DB9 178 aa10.41□□□□□ -0.74
CLN3-213ENST00000565047 PRELID1Q9Y255 219 aa10.41□□□□□ -0.74
CLN3-213ENST00000565047 PCLOQ9Y6V0 5065 aa10.4□□□□□ -0.74
CLN3-213ENST00000565047 M0R2N4 97 aa10.4□□□□□ -0.74
CLN3-213ENST00000565047 ATP5G1P05496 136 aa10.4□□□□□ -0.74
CLN3-213ENST00000565047 LEPP41159 167 aa10.4□□□□□ -0.74
CLN3-213ENST00000565047 ATP5G3P48201 142 aa10.4□□□□□ -0.74
CLN3-213ENST00000565047 C9orf47Q6ZRZ4 202 aa10.4□□□□□ -0.74
CLN3-213ENST00000565047 LINC00477Q96M19 166 aa10.4□□□□□ -0.74
CLN3-213ENST00000565047 LINC00467Q9BRT7 94 aa10.4□□□□□ -0.74
CLN3-213ENST00000565047 TRAV12-3A0A0B4J271 114 aa10.39□□□□□ -0.75
CLN3-213ENST00000565047 F5H768 121 aa10.39□□□□□ -0.75
CLN3-213ENST00000565047 SLC25A5P05141 298 aaKnown RBP10.39□□□□□ -0.75
CLN3-213ENST00000565047 NBEAP1P0C6P0 100 aa10.39□□□□□ -0.75
CLN3-213ENST00000565047 CRISP2P16562 243 aa10.39□□□□□ -0.75
CLN3-213ENST00000565047 CD300CQ08708 224 aa10.39□□□□□ -0.75
CLN3-213ENST00000565047 DAZ2Q13117 558 aaKnown RBP10.39□□□□□ -0.75
CLN3-213ENST00000565047 C11orf72Q8NBR9 251 aa10.39□□□□□ -0.75
CLN3-213ENST00000565047 BLNKQ8WV28 456 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms