RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 EIF4E3Q8N5X7 224 aaKnown RBP4.9□□□□□ -1.63
VPS4A-203ENST00000564399 C11orf72Q8NBR9 251 aa4.9□□□□□ -1.63
VPS4A-203ENST00000564399 ZNF431Q8TF32 576 aaPredicted RBP4.9□□□□□ -1.63
VPS4A-203ENST00000564399 PCNPQ8WW12 178 aaKnown RBP4.9□□□□□ -1.63
VPS4A-203ENST00000564399 CIB3Q96Q77 187 aaPredicted RBP4.9□□□□□ -1.63
VPS4A-203ENST00000564399 Q9HAA7 133 aa4.9□□□□□ -1.63
VPS4A-203ENST00000564399 MRPL16Q9NX20 251 aaKnown RBP4.9□□□□□ -1.63
VPS4A-203ENST00000564399 RNF24Q9Y225 148 aa4.9□□□□□ -1.63
VPS4A-203ENST00000564399 RCL1Q9Y2P8 373 aaKnown RBP4.9□□□□□ -1.63
VPS4A-203ENST00000564399 KLF12Q9Y4X4 402 aa4.9□□□□□ -1.63
VPS4A-203ENST00000564399 TRAV5A0A0B4J249 113 aa4.89□□□□□ -1.63
VPS4A-203ENST00000564399 LINC00854A0A1B0GVQ3 168 aa4.89□□□□□ -1.63
VPS4A-203ENST00000564399 C7orf71A4D174 169 aa4.89□□□□□ -1.63
VPS4A-203ENST00000564399 PRSS46E5RG02 174 aa4.89□□□□□ -1.63
VPS4A-203ENST00000564399 H3BP45 60 aa4.89□□□□□ -1.63
VPS4A-203ENST00000564399 H3BTX0 84 aa4.89□□□□□ -1.63
VPS4A-203ENST00000564399 SPINK4O60575 86 aa4.89□□□□□ -1.63
VPS4A-203ENST00000564399 CT45A10P0DMU9 189 aa4.89□□□□□ -1.63
VPS4A-203ENST00000564399 ANXA3P12429 323 aa4.89□□□□□ -1.63
VPS4A-203ENST00000564399 GYPEP15421 78 aa4.89□□□□□ -1.63
VPS4A-203ENST00000564399 TCL1AP56279 114 aa4.89□□□□□ -1.63
VPS4A-203ENST00000564399 SELENOTP62341 195 aa4.89□□□□□ -1.63
VPS4A-203ENST00000564399 SRPXP78539 464 aa4.89□□□□□ -1.63
VPS4A-203ENST00000564399 FHL2Q14192 279 aa4.89□□□□□ -1.63
VPS4A-203ENST00000564399 TEPPQ6URK8 271 aa4.89□□□□□ -1.63
VPS4A-203ENST00000564399 Q6ZSA8 131 aa4.89□□□□□ -1.63
VPS4A-203ENST00000564399 LRTM2Q8N967 370 aa4.89□□□□□ -1.63
VPS4A-203ENST00000564399 OR51S1Q8NGJ8 323 aa4.89□□□□□ -1.63
VPS4A-203ENST00000564399 C15orf40Q8WUR7 153 aa4.89□□□□□ -1.63
VPS4A-203ENST00000564399 YIPF6Q96EC8 236 aa4.89□□□□□ -1.63
VPS4A-203ENST00000564399 SCGB3A2Q96PL1 93 aa4.89□□□□□ -1.63
VPS4A-203ENST00000564399 PRRT1Q99946 306 aa4.89□□□□□ -1.63
VPS4A-203ENST00000564399 MRPL32Q9BYC8 188 aaKnown RBP4.89□□□□□ -1.63
VPS4A-203ENST00000564399 ARL6Q9H0F7 186 aa4.89□□□□□ -1.63
VPS4A-203ENST00000564399 RNF213Q63HN8 5207 aa4.89□□□□□ -1.63
VPS4A-203ENST00000564399 PIGBOS1A0A0B4J2F0 54 aa4.88□□□□□ -1.63
VPS4A-203ENST00000564399 K7EQD1 137 aa4.88□□□□□ -1.63
VPS4A-203ENST00000564399 SLC17A3O00476 420 aa4.88□□□□□ -1.63
VPS4A-203ENST00000564399 RGS13O14921 159 aa4.88□□□□□ -1.63
VPS4A-203ENST00000564399 MRPS12O15235 138 aaKnown RBP4.88□□□□□ -1.63
VPS4A-203ENST00000564399 SYNGR2O43760 224 aa4.88□□□□□ -1.63
VPS4A-203ENST00000564399 PITX3O75364 302 aa4.88□□□□□ -1.63
VPS4A-203ENST00000564399 SLC25A5P05141 298 aaKnown RBP4.88□□□□□ -1.63
VPS4A-203ENST00000564399 AKAIN1P0CW23 69 aa4.88□□□□□ -1.63
VPS4A-203ENST00000564399 RNASE4P34096 147 aaKnown RBP4.88□□□□□ -1.63
VPS4A-203ENST00000564399 PLP1P60201 277 aa4.88□□□□□ -1.63
VPS4A-203ENST00000564399 VBP1P61758 197 aa4.88□□□□□ -1.63
VPS4A-203ENST00000564399 NCS1P62166 190 aa4.88□□□□□ -1.63
VPS4A-203ENST00000564399 SSBP1Q04837 148 aaKnown RBP4.88□□□□□ -1.63
VPS4A-203ENST00000564399 ANXA2RQ3ZCQ2 193 aa4.88□□□□□ -1.63
VPS4A-203ENST00000564399 PATE2Q6UY27 113 aa4.88□□□□□ -1.63
VPS4A-203ENST00000564399 BPIFA4PQ86YQ2 179 aa4.88□□□□□ -1.63
VPS4A-203ENST00000564399 CLVS1Q8IUQ0 354 aaPredicted RBP4.88□□□□□ -1.63
VPS4A-203ENST00000564399 ODF3Q96PU9 254 aa4.88□□□□□ -1.63
VPS4A-203ENST00000564399 VGLL1Q99990 258 aa4.88□□□□□ -1.63
VPS4A-203ENST00000564399 ARV1Q9H2C2 271 aa4.88□□□□□ -1.63
VPS4A-203ENST00000564399 VCX3AQ9NNX9 186 aa4.88□□□□□ -1.63
VPS4A-203ENST00000564399 STRAPQ9Y3F4 350 aaKnown RBP4.88□□□□□ -1.63
VPS4A-203ENST00000564399 PXMP4Q9Y6I8 212 aa4.88□□□□□ -1.63
VPS4A-203ENST00000564399 IGHV3-38A0A0C4DH36 116 aa4.87□□□□□ -1.63
VPS4A-203ENST00000564399 KRTAP9-6A0A140TA67 174 aa4.87□□□□□ -1.63
VPS4A-203ENST00000564399 MPDU1O75352 247 aa4.87□□□□□ -1.63
VPS4A-203ENST00000564399 ORM1P02763 201 aa4.87□□□□□ -1.63
VPS4A-203ENST00000564399 SFTA3P0C7M3 94 aa4.87□□□□□ -1.63
VPS4A-203ENST00000564399 CD300CQ08708 224 aa4.87□□□□□ -1.63
VPS4A-203ENST00000564399 BTN1A1Q13410 526 aa4.87□□□□□ -1.63
VPS4A-203ENST00000564399 SCXQ7RTU7 201 aa4.87□□□□□ -1.63
VPS4A-203ENST00000564399 LINC00305Q7Z4B0 112 aa4.87□□□□□ -1.63
VPS4A-203ENST00000564399 AP3S1Q92572 193 aa4.87□□□□□ -1.63
VPS4A-203ENST00000564399 ARPC5LQ9BPX5 153 aa4.87□□□□□ -1.63
VPS4A-203ENST00000564399 TXNDC17Q9BRA2 123 aa4.87□□□□□ -1.63
VPS4A-203ENST00000564399 SCP2D1Q9UJQ7 156 aa4.87□□□□□ -1.63
VPS4A-203ENST00000564399 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.86□□□□□ -1.63
VPS4A-203ENST00000564399 DUXBA0A1W2PPF3 345 aa4.86□□□□□ -1.63
VPS4A-203ENST00000564399 IBA57-AS1B1ANH7 110 aa4.86□□□□□ -1.63
VPS4A-203ENST00000564399 GOSR2O14653 212 aa4.86□□□□□ -1.63
VPS4A-203ENST00000564399 RS1O15537 224 aa4.86□□□□□ -1.63
VPS4A-203ENST00000564399 GPX1P07203 203 aa4.86□□□□□ -1.63
VPS4A-203ENST00000564399 SLC25A6P12236 298 aa4.86□□□□□ -1.63
VPS4A-203ENST00000564399 PPT1P50897 306 aa4.86□□□□□ -1.63
VPS4A-203ENST00000564399 RRAS2P62070 204 aaPredicted RBP4.86□□□□□ -1.63
VPS4A-203ENST00000564399 MRPS10P82664 201 aaKnown RBP4.86□□□□□ -1.63
VPS4A-203ENST00000564399 ERCC8Q13216 396 aa4.86□□□□□ -1.63
VPS4A-203ENST00000564399 LINC01620Q4KN68 170 aa4.86□□□□□ -1.63
VPS4A-203ENST00000564399 IBA57Q5T440 356 aaKnown RBP4.86□□□□□ -1.63
VPS4A-203ENST00000564399 PXDC1Q5TGL8 231 aa4.86□□□□□ -1.63
VPS4A-203ENST00000564399 NHLRC2Q8NBF2 726 aa4.86□□□□□ -1.63
VPS4A-203ENST00000564399 BLNKQ8WV28 456 aa4.86□□□□□ -1.63
VPS4A-203ENST00000564399 TM2D2Q9BX73 214 aa4.86□□□□□ -1.63
VPS4A-203ENST00000564399 MCUBQ9NWR8 336 aa4.86□□□□□ -1.63
VPS4A-203ENST00000564399 TP53TG3Q9ULZ0 132 aa4.86□□□□□ -1.63
VPS4A-203ENST00000564399 IGHV1OR15-1A0A075B7D0 117 aa4.85□□□□□ -1.63
VPS4A-203ENST00000564399 TRAV8-6A0A0B4J262 113 aa4.85□□□□□ -1.63
VPS4A-203ENST00000564399 KLLNB2CW77 178 aa4.85□□□□□ -1.63
VPS4A-203ENST00000564399 C9JCJ5 164 aa4.85□□□□□ -1.63
VPS4A-203ENST00000564399 H3BQ15 152 aa4.85□□□□□ -1.63
VPS4A-203ENST00000564399 LECT2O14960 151 aa4.85□□□□□ -1.63
VPS4A-203ENST00000564399 RGS5O15539 181 aa4.85□□□□□ -1.63
VPS4A-203ENST00000564399 COX7A2P2O60397 106 aa4.85□□□□□ -1.63
VPS4A-203ENST00000564399 IGHV3-30P01768 117 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms