RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 FFAR1O14842 300 aa3.83□□□□□ -1.8
VPS35-205ENST00000563984 RBMY1DP0C7P1 496 aaKnown RBP3.83□□□□□ -1.8
VPS35-205ENST00000563984 RBMY1A1P0DJD3 496 aaKnown RBP3.83□□□□□ -1.8
VPS35-205ENST00000563984 IGHV4-31P0DP07 118 aa3.83□□□□□ -1.8
VPS35-205ENST00000563984 HBBP68871 147 aa3.83□□□□□ -1.8
VPS35-205ENST00000563984 CCL8P80075 99 aa3.83□□□□□ -1.8
VPS35-205ENST00000563984 SSBP1Q04837 148 aaKnown RBP3.83□□□□□ -1.8
VPS35-205ENST00000563984 ADIGQ0VDE8 80 aa3.83□□□□□ -1.8
VPS35-205ENST00000563984 POM121L12Q8N7R1 296 aa3.83□□□□□ -1.8
VPS35-205ENST00000563984 OR5C1Q8NGR4 320 aa3.83□□□□□ -1.8
VPS35-205ENST00000563984 CTSZQ9UBR2 303 aa3.83□□□□□ -1.8
VPS35-205ENST00000563984 HHLA3Q9XRX5 114 aa3.83□□□□□ -1.8
VPS35-205ENST00000563984 ARL2-SNX15V9GYD0 113 aa3.83□□□□□ -1.8
VPS35-205ENST00000563984 TJP1Q07157 1748 aa3.83□□□□□ -1.8
VPS35-205ENST00000563984 RAI1Q7Z5J4 1906 aaPredicted RBP3.83□□□□□ -1.8
VPS35-205ENST00000563984 IGLV5-45A0A087WSX0 123 aa3.82□□□□□ -1.8
VPS35-205ENST00000563984 LOC389332A0A1B0GUA5 103 aa3.82□□□□□ -1.8
VPS35-205ENST00000563984 hADV29S1A0JD25 119 aa3.82□□□□□ -1.8
VPS35-205ENST00000563984 IGLL5B9A064 214 aa3.82□□□□□ -1.8
VPS35-205ENST00000563984 K7EM74 188 aa3.82□□□□□ -1.8
VPS35-205ENST00000563984 LST1O00453 97 aa3.82□□□□□ -1.8
VPS35-205ENST00000563984 IGHV4-39P01824 125 aa3.82□□□□□ -1.8
VPS35-205ENST00000563984 PRH1P02810 166 aa3.82□□□□□ -1.8
VPS35-205ENST00000563984 ACYP1P07311 99 aa3.82□□□□□ -1.8
VPS35-205ENST00000563984 MDKP21741 143 aaPredicted RBP3.82□□□□□ -1.8
VPS35-205ENST00000563984 RPL7L1Q6DKI1 246 aaKnown RBP3.82□□□□□ -1.8
VPS35-205ENST00000563984 ZCCHC23Q6ZST2 131 aa3.82□□□□□ -1.8
VPS35-205ENST00000563984 CYP2G1PQ6ZSU1 146 aa3.82□□□□□ -1.8
VPS35-205ENST00000563984 C2orf91Q6ZV80 131 aa3.82□□□□□ -1.8
VPS35-205ENST00000563984 FAM19A3Q7Z5A8 133 aa3.82□□□□□ -1.8
VPS35-205ENST00000563984 CCL13Q99616 98 aa3.82□□□□□ -1.8
VPS35-205ENST00000563984 RHNO1Q9BSD3 238 aa3.82□□□□□ -1.8
VPS35-205ENST00000563984 FAM103A1Q9BTL3 118 aaKnown RBP3.82□□□□□ -1.8
VPS35-205ENST00000563984 PLEKHA3Q9HB20 300 aa3.82□□□□□ -1.8
VPS35-205ENST00000563984 MOB4Q9Y3A3 225 aa3.82□□□□□ -1.8
VPS35-205ENST00000563984 ZFC3H1O60293 1989 aaKnown RBP3.82□□□□□ -1.8
VPS35-205ENST00000563984 RREB1Q92766 1687 aa3.81□□□□□ -1.8
VPS35-205ENST00000563984 FAM208AQ9UK61 1670 aaKnown RBP3.81□□□□□ -1.8
VPS35-205ENST00000563984 IGKV1D-8A0A087WSZ0 117 aa3.81□□□□□ -1.8
VPS35-205ENST00000563984 IGHV1OR21-1A0A087WYE8 117 aa3.81□□□□□ -1.8
VPS35-205ENST00000563984 TRAV17A0A0B4J275 112 aa3.81□□□□□ -1.8
VPS35-205ENST00000563984 PMS2P5A8MQ11 134 aa3.81□□□□□ -1.8
VPS35-205ENST00000563984 A8MUN3 132 aa3.81□□□□□ -1.8
VPS35-205ENST00000563984 C4orf51C9J302 202 aa3.81□□□□□ -1.8
VPS35-205ENST00000563984 DAPP51397 102 aa3.81□□□□□ -1.8
VPS35-205ENST00000563984 TMEM155Q4W5P6 130 aa3.81□□□□□ -1.8
VPS35-205ENST00000563984 WDR38Q5JTN6 314 aa3.81□□□□□ -1.8
VPS35-205ENST00000563984 Q6ZQT7 251 aa3.81□□□□□ -1.8
VPS35-205ENST00000563984 PHF5AQ7RTV0 110 aaKnown RBP3.81□□□□□ -1.8
VPS35-205ENST00000563984 LINC00596Q86U02 117 aa3.81□□□□□ -1.8
VPS35-205ENST00000563984 MORN4Q8NDC4 146 aa3.81□□□□□ -1.8
VPS35-205ENST00000563984 RFESDQ8TAC1 157 aa3.81□□□□□ -1.8
VPS35-205ENST00000563984 ZNF721Q8TF20 911 aa3.81□□□□□ -1.8
VPS35-205ENST00000563984 TSKUQ8WUA8 353 aa3.81□□□□□ -1.8
VPS35-205ENST00000563984 TAF15Q92804 592 aaKnown RBP eCLIP3.81□□□□□ -1.8
VPS35-205ENST00000563984 C17orf77Q96MU5 243 aa3.81□□□□□ -1.8
VPS35-205ENST00000563984 TIMM17AQ99595 171 aa3.81□□□□□ -1.8
VPS35-205ENST00000563984 CLEC7AQ9BXN2 247 aa3.81□□□□□ -1.8
VPS35-205ENST00000563984 NXT2Q9NPJ8 142 aaKnown RBP3.81□□□□□ -1.8
VPS35-205ENST00000563984 HIGD1BQ9P298 99 aa3.81□□□□□ -1.8
VPS35-205ENST00000563984 TP53TG3Q9ULZ0 132 aa3.81□□□□□ -1.8
VPS35-205ENST00000563984 CSAG2Q9Y5P2 127 aa3.81□□□□□ -1.8
VPS35-205ENST00000563984 HCFC1P51610 2035 aa3.81□□□□□ -1.8
VPS35-205ENST00000563984 PCNTO95613 3336 aa3.81□□□□□ -1.8
VPS35-205ENST00000563984 GOLGB1Q14789 3259 aaKnown RBP3.81□□□□□ -1.8
VPS35-205ENST00000563984 SCN2AQ99250 2005 aa3.8□□□□□ -1.8
VPS35-205ENST00000563984 MCM3APO60318 1980 aa3.8□□□□□ -1.8
VPS35-205ENST00000563984 SLX4Q8IY92 1834 aa3.8□□□□□ -1.8
VPS35-205ENST00000563984 ARFGEF1Q9Y6D6 1849 aa3.8□□□□□ -1.8
VPS35-205ENST00000563984 TRAV1-1A0A0B4J248 108 aa3.8□□□□□ -1.8
VPS35-205ENST00000563984 A0A0D9SEW6 157 aa3.8□□□□□ -1.8
VPS35-205ENST00000563984 INS-IGF2F8WCM5 200 aa3.8□□□□□ -1.8
VPS35-205ENST00000563984 TMEM256-PLSCR3K7ERE1 68 aa3.8□□□□□ -1.8
VPS35-205ENST00000563984 COX7A2LO14548 114 aa3.8□□□□□ -1.8
VPS35-205ENST00000563984 PSPHP1O15172 72 aa3.8□□□□□ -1.8
VPS35-205ENST00000563984 HBDP02042 147 aa3.8□□□□□ -1.8
VPS35-205ENST00000563984 APCSP02743 223 aa3.8□□□□□ -1.8
VPS35-205ENST00000563984 ASAH2BP0C7U1 165 aa3.8□□□□□ -1.8
VPS35-205ENST00000563984 NOTCH2NLQ7Z3S9 236 aa3.8□□□□□ -1.8
VPS35-205ENST00000563984 SERP2Q8N6R1 65 aa3.8□□□□□ -1.8
VPS35-205ENST00000563984 MAPKAPK5-AS1Q8N8E1 139 aa3.8□□□□□ -1.8
VPS35-205ENST00000563984 VSIG2Q96IQ7 327 aa3.8□□□□□ -1.8
VPS35-205ENST00000563984 PGLYRP4Q96LB8 373 aa3.8□□□□□ -1.8
VPS35-205ENST00000563984 LINC01600Q96MT4 127 aa3.8□□□□□ -1.8
VPS35-205ENST00000563984 TRGV9Q99603 122 aa3.8□□□□□ -1.8
VPS35-205ENST00000563984 ADGRB1O14514 1584 aa3.8□□□□□ -1.8
VPS35-205ENST00000563984 LAMB2P55268 1798 aa3.79□□□□□ -1.8
VPS35-205ENST00000563984 WDR90Q96KV7 1748 aa3.79□□□□□ -1.8
VPS35-205ENST00000563984 IGKV1D-13A0A0B4J2D9 117 aa3.79□□□□□ -1.8
VPS35-205ENST00000563984 IGHV1-24A0A0C4DH33 117 aa3.79□□□□□ -1.8
VPS35-205ENST00000563984 KLLNB2CW77 178 aa3.79□□□□□ -1.8
VPS35-205ENST00000563984 SLC25A14O95258 325 aaPredicted RBP3.79□□□□□ -1.8
VPS35-205ENST00000563984 TRBV12-3P01733 135 aa3.79□□□□□ -1.8
VPS35-205ENST00000563984 IGKV1-13P0DP09 117 aa3.79□□□□□ -1.8
VPS35-205ENST00000563984 ZNF823P16415 610 aa3.79□□□□□ -1.8
VPS35-205ENST00000563984 ZNF80P51504 273 aaPredicted RBP3.79□□□□□ -1.8
VPS35-205ENST00000563984 PCBD1P61457 104 aa3.79□□□□□ -1.8
VPS35-205ENST00000563984 SNRPGP62308 76 aaKnown RBP3.79□□□□□ -1.8
VPS35-205ENST00000563984 UBE2BP63146 152 aa3.79□□□□□ -1.8
VPS35-205ENST00000563984 PRR3P79522 188 aaKnown RBP3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms