RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 RAB14P61106 215 aa12.32□□□□□ -0.44
VPS4A-202ENST00000562754 HAGHQ16775 308 aa12.32□□□□□ -0.44
VPS4A-202ENST00000562754 ZNF738Q8NE65 137 aa12.32□□□□□ -0.44
VPS4A-202ENST00000562754 MRPL53Q96EL3 112 aaKnown RBP12.32□□□□□ -0.44
VPS4A-202ENST00000562754 CLEC5AQ9NY25 188 aa12.32□□□□□ -0.44
VPS4A-202ENST00000562754 PRELID1Q9Y255 219 aa12.32□□□□□ -0.44
VPS4A-202ENST00000562754 DNAH3Q8TD57 4116 aa12.32□□□□□ -0.44
VPS4A-202ENST00000562754 LOC102723971A0A1B0GUV8 181 aa12.31□□□□□ -0.44
VPS4A-202ENST00000562754 OR11H12B2RN74 326 aa12.31□□□□□ -0.44
VPS4A-202ENST00000562754 IFNA1P01562 189 aa12.31□□□□□ -0.44
VPS4A-202ENST00000562754 SUMO1P63165 101 aaKnown RBP12.31□□□□□ -0.44
VPS4A-202ENST00000562754 GNG5P63218 68 aa12.31□□□□□ -0.44
VPS4A-202ENST00000562754 CST9LP1Q5W188 147 aa12.31□□□□□ -0.44
VPS4A-202ENST00000562754 GTSCR1Q86UQ5 136 aa12.31□□□□□ -0.44
VPS4A-202ENST00000562754 APRG1Q8IVJ8 170 aa12.31□□□□□ -0.44
VPS4A-202ENST00000562754 Q8N1Y9 231 aa12.31□□□□□ -0.44
VPS4A-202ENST00000562754 RPUSD4Q96CM3 377 aaKnown RBP12.31□□□□□ -0.44
VPS4A-202ENST00000562754 FAM110AQ9BQ89 295 aa12.31□□□□□ -0.44
VPS4A-202ENST00000562754 AGRNO00468 2067 aa12.3□□□□□ -0.44
VPS4A-202ENST00000562754 F6UB75 175 aa12.3□□□□□ -0.44
VPS4A-202ENST00000562754 SLC25A5P05141 298 aaKnown RBP12.3□□□□□ -0.44
VPS4A-202ENST00000562754 GDF5OSQ5U4N7 250 aa12.3□□□□□ -0.44
VPS4A-202ENST00000562754 CCDC28AQ8IWP9 274 aa12.3□□□□□ -0.44
VPS4A-202ENST00000562754 C5orf17Q8NAS9 161 aa12.3□□□□□ -0.44
VPS4A-202ENST00000562754 ZMAT5Q9UDW3 170 aaKnown RBP12.3□□□□□ -0.44
VPS4A-202ENST00000562754 KNCNA6PVL3 124 aa12.29□□□□□ -0.44
VPS4A-202ENST00000562754 C11orf94C9JXX5 98 aa12.29□□□□□ -0.44
VPS4A-202ENST00000562754 CMC4P56277 68 aaPredicted RBP12.29□□□□□ -0.44
VPS4A-202ENST00000562754 TOR2AQ5JU69 321 aa12.29□□□□□ -0.44
VPS4A-202ENST00000562754 FAM210AQ96ND0 272 aa12.29□□□□□ -0.44
VPS4A-202ENST00000562754 CITED4Q96RK1 184 aa12.29□□□□□ -0.44
VPS4A-202ENST00000562754 RARRES2Q99969 163 aa12.29□□□□□ -0.44
VPS4A-202ENST00000562754 RPH3ALQ9UNE2 315 aa12.29□□□□□ -0.44
VPS4A-202ENST00000562754 IGKV2-40A0A087WW87 121 aaPredicted RBP12.28□□□□□ -0.44
VPS4A-202ENST00000562754 RBFOX3A6NFN3 312 aa12.28□□□□□ -0.44
VPS4A-202ENST00000562754 DIRC3C9JPN6 131 aa12.28□□□□□ -0.44
VPS4A-202ENST00000562754 IGKV2D-40P01614 121 aaPredicted RBP12.28□□□□□ -0.44
VPS4A-202ENST00000562754 ZNF705DP0CH99 300 aaPredicted RBP12.28□□□□□ -0.44
VPS4A-202ENST00000562754 ZNF705BP0CI00 300 aaPredicted RBP12.28□□□□□ -0.44
VPS4A-202ENST00000562754 ZNF506Q5JVG8 444 aa12.28□□□□□ -0.44
VPS4A-202ENST00000562754 FOXI2Q6ZQN5 318 aa12.28□□□□□ -0.44
VPS4A-202ENST00000562754 DEFB125Q8N687 156 aa12.28□□□□□ -0.44
VPS4A-202ENST00000562754 CMTM2Q8TAZ6 248 aa12.28□□□□□ -0.44
VPS4A-202ENST00000562754 NKX6-2Q9C056 277 aaPredicted RBP12.28□□□□□ -0.44
VPS4A-202ENST00000562754 SAV1Q9H4B6 383 aaPredicted RBP12.28□□□□□ -0.44
VPS4A-202ENST00000562754 VAX2Q9UIW0 290 aa12.28□□□□□ -0.44
VPS4A-202ENST00000562754 A0A0J9YX75 114 aa12.27□□□□□ -0.45
VPS4A-202ENST00000562754 PRB2P02812 416 aaPredicted RBP12.27□□□□□ -0.45
VPS4A-202ENST00000562754 TCRAP04437 139 aa12.27□□□□□ -0.45
VPS4A-202ENST00000562754 CSN1S1P47710 185 aa12.27□□□□□ -0.45
VPS4A-202ENST00000562754 MEF2BQ02080 365 aaPredicted RBP12.27□□□□□ -0.45
VPS4A-202ENST00000562754 OR8A1Q8NGG7 326 aa12.27□□□□□ -0.45
VPS4A-202ENST00000562754 RXFP4Q8TDU9 374 aa12.27□□□□□ -0.45
VPS4A-202ENST00000562754 EPDR1Q9UM22 224 aa12.27□□□□□ -0.45
VPS4A-202ENST00000562754 SCO2A0A1W2PP80 73 aa12.26□□□□□ -0.45
VPS4A-202ENST00000562754 PEX7O00628 323 aa12.26□□□□□ -0.45
VPS4A-202ENST00000562754 HLA-DRB4P13762 266 aa12.26□□□□□ -0.45
VPS4A-202ENST00000562754 TAGLN2P37802 199 aaKnown RBP12.26□□□□□ -0.45
VPS4A-202ENST00000562754 HIST1H1AQ02539 215 aaPredicted RBP12.26□□□□□ -0.45
VPS4A-202ENST00000562754 ACTL10Q5JWF8 245 aa12.26□□□□□ -0.45
VPS4A-202ENST00000562754 GOLT1AQ6ZVE7 132 aa12.26□□□□□ -0.45
VPS4A-202ENST00000562754 ARL6IP6Q8N6S5 226 aa12.26□□□□□ -0.45
VPS4A-202ENST00000562754 AURKAIP1Q9NWT8 199 aaPredicted RBP12.26□□□□□ -0.45
VPS4A-202ENST00000562754 HLA-DRB4X5D2U9 266 aa12.26□□□□□ -0.45
VPS4A-202ENST00000562754 NPIPB6E9PJ23 425 aa12.25□□□□□ -0.45
VPS4A-202ENST00000562754 H3BMM0 161 aa12.25□□□□□ -0.45
VPS4A-202ENST00000562754 SRSF3P84103 164 aaKnown RBP12.25□□□□□ -0.45
VPS4A-202ENST00000562754 ERCC8Q13216 396 aa12.25□□□□□ -0.45
VPS4A-202ENST00000562754 C11orf52Q96A22 123 aa12.25□□□□□ -0.45
VPS4A-202ENST00000562754 VGLL1Q99990 258 aa12.25□□□□□ -0.45
VPS4A-202ENST00000562754 TXNDC17Q9BRA2 123 aa12.25□□□□□ -0.45
VPS4A-202ENST00000562754 TCEAL7Q9BRU2 100 aa12.25□□□□□ -0.45
VPS4A-202ENST00000562754 ATG101Q9BSB4 218 aa12.25□□□□□ -0.45
VPS4A-202ENST00000562754 SRD5A3Q9H8P0 318 aa12.25□□□□□ -0.45
VPS4A-202ENST00000562754 RBMY1BA6NDE4 496 aaKnown RBP12.24□□□□□ -0.45
VPS4A-202ENST00000562754 RBMY1EA6NEQ0 496 aaKnown RBP12.24□□□□□ -0.45
VPS4A-202ENST00000562754 A8MTW9 85 aa12.24□□□□□ -0.45
VPS4A-202ENST00000562754 RBMY1DP0C7P1 496 aaKnown RBP12.24□□□□□ -0.45
VPS4A-202ENST00000562754 CNN1P51911 297 aaKnown RBP12.24□□□□□ -0.45
VPS4A-202ENST00000562754 EBLN2Q6P2I7 272 aa12.24□□□□□ -0.45
VPS4A-202ENST00000562754 CYB561D1Q8N8Q1 229 aa12.24□□□□□ -0.45
VPS4A-202ENST00000562754 OR10J6PQ8NGY7 276 aa12.24□□□□□ -0.45
VPS4A-202ENST00000562754 EIF5A2Q9GZV4 153 aaKnown RBP12.24□□□□□ -0.45
VPS4A-202ENST00000562754 TRAV8-1A0A0A6YYK1 113 aa12.23□□□□□ -0.45
VPS4A-202ENST00000562754 RBAKDNA6NC62 111 aa12.23□□□□□ -0.45
VPS4A-202ENST00000562754 TRPT1Q86TN4 253 aaKnown RBP12.23□□□□□ -0.45
VPS4A-202ENST00000562754 C2CD4CQ8TF44 421 aa12.23□□□□□ -0.45
VPS4A-202ENST00000562754 HIST1H2BAQ96A08 127 aa12.23□□□□□ -0.45
VPS4A-202ENST00000562754 AGPAT4-IT1Q9H0P7 198 aa12.23□□□□□ -0.45
VPS4A-202ENST00000562754 MED9Q9NWA0 146 aa12.23□□□□□ -0.45
VPS4A-202ENST00000562754 TRAV34A0A0B4J273 112 aa12.22□□□□□ -0.45
VPS4A-202ENST00000562754 SERTM2A0A1B0GWG4 89 aa12.22□□□□□ -0.45
VPS4A-202ENST00000562754 LINC00862A6NCI5 91 aa12.22□□□□□ -0.45
VPS4A-202ENST00000562754 C9JQL5 133 aa12.22□□□□□ -0.45
VPS4A-202ENST00000562754 F6UZH7 168 aa12.22□□□□□ -0.45
VPS4A-202ENST00000562754 K7EIL1 84 aa12.22□□□□□ -0.45
VPS4A-202ENST00000562754 PDE6DO43924 150 aa12.22□□□□□ -0.45
VPS4A-202ENST00000562754 IGKV3-20P01619 116 aa12.22□□□□□ -0.45
VPS4A-202ENST00000562754 IGLV2-11P01706 119 aa12.22□□□□□ -0.45
VPS4A-202ENST00000562754 IGHV4-30-4P0DP06 118 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 197.7 ms