RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 OR10J6PQ8NGY7 276 aa11.18□□□□□ -0.62
VPS39-203ENST00000561797 TEX48A0A1B0GUV7 120 aa11.17□□□□□ -0.62
VPS39-203ENST00000561797 PYYP10082 97 aa11.17□□□□□ -0.62
VPS39-203ENST00000561797 HTN3P15516 51 aa11.17□□□□□ -0.62
VPS39-203ENST00000561797 LINC01587Q99440 93 aa11.17□□□□□ -0.62
VPS39-203ENST00000561797 PARD6GQ9BYG4 376 aaPredicted RBP11.17□□□□□ -0.62
VPS39-203ENST00000561797 WDR61Q9GZS3 305 aaKnown RBP11.17□□□□□ -0.62
VPS39-203ENST00000561797 PET100P0DJ07 73 aa11.16□□□□□ -0.62
VPS39-203ENST00000561797 HTN1P15515 57 aa11.16□□□□□ -0.62
VPS39-203ENST00000561797 AZU1P20160 251 aa11.16□□□□□ -0.62
VPS39-203ENST00000561797 CDKN1BP46527 198 aa11.16□□□□□ -0.62
VPS39-203ENST00000561797 MIR17HGQ75NE6 70 aa11.16□□□□□ -0.62
VPS39-203ENST00000561797 BLNKQ8WV28 456 aa11.16□□□□□ -0.62
VPS39-203ENST00000561797 SMIM3Q9BZL3 60 aa11.16□□□□□ -0.62
VPS39-203ENST00000561797 TMEM14CQ9P0S9 112 aa11.16□□□□□ -0.62
VPS39-203ENST00000561797 MBD2Q9UBB5 411 aa11.16□□□□□ -0.62
VPS39-203ENST00000561797 HSPB11Q9Y547 144 aa11.16□□□□□ -0.62
VPS39-203ENST00000561797 TIMM9Q9Y5J7 89 aa11.16□□□□□ -0.62
VPS39-203ENST00000561797 ALG5Q9Y673 324 aa11.16□□□□□ -0.62
VPS39-203ENST00000561797 TRBV19A0A075B6N1 114 aa11.15□□□□□ -0.62
VPS39-203ENST00000561797 J3KRW8 73 aa11.15□□□□□ -0.62
VPS39-203ENST00000561797 HIST1H1EP10412 219 aaKnown RBP11.15□□□□□ -0.62
VPS39-203ENST00000561797 RPL12P30050 165 aaKnown RBP11.15□□□□□ -0.62
VPS39-203ENST00000561797 DAD1P61803 113 aa11.15□□□□□ -0.62
VPS39-203ENST00000561797 KIR3DS1Q14943 382 aa11.15□□□□□ -0.62
VPS39-203ENST00000561797 TMEM256Q8N2U0 113 aa11.15□□□□□ -0.62
VPS39-203ENST00000561797 ATP5SQ99766 215 aa11.15□□□□□ -0.62
VPS39-203ENST00000561797 NDUFAF3Q9BU61 184 aa11.15□□□□□ -0.62
VPS39-203ENST00000561797 SLC25A2Q9BXI2 301 aa11.15□□□□□ -0.62
VPS39-203ENST00000561797 C17orf112F2Z3M2 114 aa11.14□□□□□ -0.63
VPS39-203ENST00000561797 ZNF253O75346 499 aa11.14□□□□□ -0.63
VPS39-203ENST00000561797 KCNIP2Q9NS61 270 aa11.14□□□□□ -0.63
VPS39-203ENST00000561797 M0R3E3 92 aa11.13□□□□□ -0.63
VPS39-203ENST00000561797 NDUFB4O95168 129 aa11.13□□□□□ -0.63
VPS39-203ENST00000561797 TSPOP30536 169 aa11.13□□□□□ -0.63
VPS39-203ENST00000561797 OXA1LQ15070 435 aa11.13□□□□□ -0.63
VPS39-203ENST00000561797 FCN2Q15485 313 aa11.13□□□□□ -0.63
VPS39-203ENST00000561797 EXOC3-AS1Q8N2X6 119 aa11.13□□□□□ -0.63
VPS39-203ENST00000561797 SCGB1C1Q8TD33 95 aa11.13□□□□□ -0.63
VPS39-203ENST00000561797 FAM167A-AS1Q96KT0 104 aa11.13□□□□□ -0.63
VPS39-203ENST00000561797 NPIPB6E9PJ23 425 aa11.12□□□□□ -0.63
VPS39-203ENST00000561797 PTTG1O95997 202 aa11.12□□□□□ -0.63
VPS39-203ENST00000561797 IFNA5P01569 189 aa11.12□□□□□ -0.63
VPS39-203ENST00000561797 CT45A10P0DMU9 189 aa11.12□□□□□ -0.63
VPS39-203ENST00000561797 DEFB130BP0DP73 79 aa11.12□□□□□ -0.63
VPS39-203ENST00000561797 DEFB130AP0DP74 79 aa11.12□□□□□ -0.63
VPS39-203ENST00000561797 TAS2R60P59551 318 aa11.12□□□□□ -0.63
VPS39-203ENST00000561797 ERCC8Q13216 396 aa11.12□□□□□ -0.63
VPS39-203ENST00000561797 FFAR4Q5NUL3 377 aa11.12□□□□□ -0.63
VPS39-203ENST00000561797 MRPL32Q9BYC8 188 aaKnown RBP11.12□□□□□ -0.63
VPS39-203ENST00000561797 OR51M1Q9H341 326 aa11.12□□□□□ -0.63
VPS39-203ENST00000561797 PLAC8L1A1L4L8 177 aa11.11□□□□□ -0.63
VPS39-203ENST00000561797 LYRM9A8MSI8 78 aa11.11□□□□□ -0.63
VPS39-203ENST00000561797 OR10J4P0C629 311 aa11.11□□□□□ -0.63
VPS39-203ENST00000561797 NBEAP1P0C6P0 100 aa11.11□□□□□ -0.63
VPS39-203ENST00000561797 LEPP41159 167 aa11.11□□□□□ -0.63
VPS39-203ENST00000561797 PDE6HQ13956 83 aa11.11□□□□□ -0.63
VPS39-203ENST00000561797 ICAM4Q14773 271 aa11.11□□□□□ -0.63
VPS39-203ENST00000561797 GFI1BQ5VTD9 330 aa11.11□□□□□ -0.63
VPS39-203ENST00000561797 MRPL53Q96EL3 112 aaKnown RBP11.11□□□□□ -0.63
VPS39-203ENST00000561797 PAXXQ9BUH6 204 aa11.11□□□□□ -0.63
VPS39-203ENST00000561797 AAMDCQ9H7C9 122 aa11.11□□□□□ -0.63
VPS39-203ENST00000561797 WFDC1Q9HC57 220 aa11.11□□□□□ -0.63
VPS39-203ENST00000561797 FUT9Q9Y231 359 aa11.11□□□□□ -0.63
VPS39-203ENST00000561797 PRELID1Q9Y255 219 aa11.11□□□□□ -0.63
VPS39-203ENST00000561797 TRAV12-3A0A0B4J271 114 aa11.1□□□□□ -0.63
VPS39-203ENST00000561797 H7BYZ3 331 aa11.1□□□□□ -0.63
VPS39-203ENST00000561797 FAM122CQ6P4D5 195 aa11.1□□□□□ -0.63
VPS39-203ENST00000561797 C16orf74Q96GX8 76 aa11.1□□□□□ -0.63
VPS39-203ENST00000561797 C20orf144Q9BQM9 153 aa11.1□□□□□ -0.63
VPS39-203ENST00000561797 MED28Q9H204 178 aa11.1□□□□□ -0.63
VPS39-203ENST00000561797 OR7C2O60412 319 aa11.09□□□□□ -0.63
VPS39-203ENST00000561797 RNF141Q8WVD5 230 aa11.09□□□□□ -0.63
VPS39-203ENST00000561797 FXYD5Q96DB9 178 aa11.09□□□□□ -0.63
VPS39-203ENST00000561797 ODF3Q96PU9 254 aa11.09□□□□□ -0.63
VPS39-203ENST00000561797 AGPAT4-IT1Q9H0P7 198 aa11.09□□□□□ -0.63
VPS39-203ENST00000561797 IGKV2-40A0A087WW87 121 aaPredicted RBP11.08□□□□□ -0.64
VPS39-203ENST00000561797 IGKV2D-40P01614 121 aaPredicted RBP11.08□□□□□ -0.64
VPS39-203ENST00000561797 P0DMU3 169 aa11.08□□□□□ -0.64
VPS39-203ENST00000561797 FAM231AP0DMU4 169 aa11.08□□□□□ -0.64
VPS39-203ENST00000561797 FAM231CP0DMU5 169 aa11.08□□□□□ -0.64
VPS39-203ENST00000561797 TMEM88Q6PEY1 159 aa11.08□□□□□ -0.64
VPS39-203ENST00000561797 ZNF493Q6ZR52 646 aa11.08□□□□□ -0.64
VPS39-203ENST00000561797 CCDC28AQ8IWP9 274 aa11.08□□□□□ -0.64
VPS39-203ENST00000561797 TMEM263Q8WUH6 116 aaKnown RBP11.08□□□□□ -0.64
VPS39-203ENST00000561797 FAM210BQ96KR6 192 aa11.08□□□□□ -0.64
VPS39-203ENST00000561797 NOP10Q9NPE3 64 aaKnown RBP11.08□□□□□ -0.64
VPS39-203ENST00000561797 TIMM8BQ9Y5J9 83 aaPredicted RBP11.08□□□□□ -0.64
VPS39-203ENST00000561797 NACAE9PAV3 2078 aa11.07□□□□□ -0.64
VPS39-203ENST00000561797 EIF3GO75821 320 aaKnown RBP eCLIP11.07□□□□□ -0.64
VPS39-203ENST00000561797 POM121L12Q8N7R1 296 aa11.07□□□□□ -0.64
VPS39-203ENST00000561797 RNASE8Q8TDE3 154 aaKnown RBP11.07□□□□□ -0.64
VPS39-203ENST00000561797 ZNF503Q96F45 646 aa11.07□□□□□ -0.64
VPS39-203ENST00000561797 PHYHIPLQ96FC7 376 aa11.07□□□□□ -0.64
VPS39-203ENST00000561797 LINC00477Q96M19 166 aa11.07□□□□□ -0.64
VPS39-203ENST00000561797 C7orf71A4D174 169 aa11.06□□□□□ -0.64
VPS39-203ENST00000561797 F5H768 121 aa11.06□□□□□ -0.64
VPS39-203ENST00000561797 SLC25A5P05141 298 aaKnown RBP11.06□□□□□ -0.64
VPS39-203ENST00000561797 RANP62826 216 aaKnown RBP11.06□□□□□ -0.64
VPS39-203ENST00000561797 UBE2L3P68036 154 aaKnown RBP11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms