RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 GFI1BQ5VTD9 330 aa13.31□□□□□ -0.28
VPS35-202ENST00000561713 TMEM256Q8N2U0 113 aa13.31□□□□□ -0.28
VPS35-202ENST00000561713 C15orf53Q8NAA6 179 aa13.31□□□□□ -0.28
VPS35-202ENST00000561713 C16orf74Q96GX8 76 aa13.31□□□□□ -0.28
VPS35-202ENST00000561713 ATG101Q9BSB4 218 aa13.31□□□□□ -0.28
VPS35-202ENST00000561713 NOP10Q9NPE3 64 aaKnown RBP13.31□□□□□ -0.28
VPS35-202ENST00000561713 HERC1Q15751 4861 aa13.3□□□□□ -0.28
VPS35-202ENST00000561713 IGSF23A1L1A6 192 aa13.3□□□□□ -0.28
VPS35-202ENST00000561713 C12orf45Q8N5I9 185 aaPredicted RBP13.3□□□□□ -0.28
VPS35-202ENST00000561713 RNASE8Q8TDE3 154 aaKnown RBP13.3□□□□□ -0.28
VPS35-202ENST00000561713 UQCC1Q9NVA1 299 aa13.3□□□□□ -0.28
VPS35-202ENST00000561713 ATP5G1P05496 136 aa13.29□□□□□ -0.28
VPS35-202ENST00000561713 ATP5G3P48201 142 aa13.29□□□□□ -0.28
VPS35-202ENST00000561713 BAXQ07812 192 aa13.29□□□□□ -0.28
VPS35-202ENST00000561713 CNPY1Q3B7I2 92 aa13.29□□□□□ -0.28
VPS35-202ENST00000561713 OR10J6PQ8NGY7 276 aa13.29□□□□□ -0.28
VPS35-202ENST00000561713 RNF141Q8WVD5 230 aa13.29□□□□□ -0.28
VPS35-202ENST00000561713 WDR83OSQ9Y284 106 aa13.29□□□□□ -0.28
VPS35-202ENST00000561713 H2AFB2P0C5Z0 115 aa13.28□□□□□ -0.28
VPS35-202ENST00000561713 RAB32Q13637 225 aa13.28□□□□□ -0.28
VPS35-202ENST00000561713 TMEM263Q8WUH6 116 aaKnown RBP13.28□□□□□ -0.28
VPS35-202ENST00000561713 C2orf50Q96LR7 162 aa13.28□□□□□ -0.28
VPS35-202ENST00000561713 RNF24Q9Y225 148 aa13.28□□□□□ -0.28
VPS35-202ENST00000561713 H7BYZ3 331 aa13.27□□□□□ -0.29
VPS35-202ENST00000561713 SAT2Q96F10 170 aaPredicted RBP13.27□□□□□ -0.29
VPS35-202ENST00000561713 DNAJC4Q9NNZ3 241 aa13.27□□□□□ -0.29
VPS35-202ENST00000561713 LYRM2Q9NU23 88 aaPredicted RBP13.27□□□□□ -0.29
VPS35-202ENST00000561713 ZNF586Q9NXT0 402 aa13.27□□□□□ -0.29
VPS35-202ENST00000561713 TIMM8BQ9Y5J9 83 aaPredicted RBP13.27□□□□□ -0.29
VPS35-202ENST00000561713 PXMP4Q9Y6I8 212 aa13.27□□□□□ -0.29
VPS35-202ENST00000561713 M0R3E3 92 aa13.26□□□□□ -0.29
VPS35-202ENST00000561713 CT45A10P0DMU9 189 aa13.26□□□□□ -0.29
VPS35-202ENST00000561713 FGF7P21781 194 aa13.26□□□□□ -0.29
VPS35-202ENST00000561713 FAM3BP58499 235 aaPredicted RBP13.26□□□□□ -0.29
VPS35-202ENST00000561713 RAB31Q13636 194 aa13.26□□□□□ -0.29
VPS35-202ENST00000561713 VWC2Q2TAL6 325 aa13.26□□□□□ -0.29
VPS35-202ENST00000561713 Q6ZRG5 221 aa13.26□□□□□ -0.29
VPS35-202ENST00000561713 SLC39A9Q9NUM3 307 aa13.26□□□□□ -0.29
VPS35-202ENST00000561713 TRAV12-3A0A0B4J271 114 aa13.25□□□□□ -0.29
VPS35-202ENST00000561713 CBY3A6NI87 242 aa13.25□□□□□ -0.29
VPS35-202ENST00000561713 PVALBP20472 110 aaPredicted RBP13.25□□□□□ -0.29
VPS35-202ENST00000561713 SULT1A1P50225 295 aa13.25□□□□□ -0.29
VPS35-202ENST00000561713 GCSAMLQ5JQS6 135 aa13.25□□□□□ -0.29
VPS35-202ENST00000561713 TMEM252Q8N6L7 170 aa13.25□□□□□ -0.29
VPS35-202ENST00000561713 OR1L4Q8NGR5 311 aa13.25□□□□□ -0.29
VPS35-202ENST00000561713 ZNRF2Q8NHG8 242 aa13.25□□□□□ -0.29
VPS35-202ENST00000561713 GPN1Q9HCN4 374 aaPredicted RBP13.25□□□□□ -0.29
VPS35-202ENST00000561713 NBDYA0A0U1RRE5 68 aa13.24□□□□□ -0.29
VPS35-202ENST00000561713 FAM240BA0A1B0GVZ2 78 aa13.24□□□□□ -0.29
VPS35-202ENST00000561713 NPIPB6E9PJ23 425 aa13.24□□□□□ -0.29
VPS35-202ENST00000561713 PYYP10082 97 aa13.24□□□□□ -0.29
VPS35-202ENST00000561713 ERCC8Q13216 396 aa13.24□□□□□ -0.29
VPS35-202ENST00000561713 ZNF493Q6ZR52 646 aa13.24□□□□□ -0.29
VPS35-202ENST00000561713 STX12Q86Y82 276 aa13.24□□□□□ -0.29
VPS35-202ENST00000561713 C6orf223Q8N319 242 aa13.24□□□□□ -0.29
VPS35-202ENST00000561713 PFDN5Q99471 154 aa13.24□□□□□ -0.29
VPS35-202ENST00000561713 CCDC32Q9BV29 185 aa13.24□□□□□ -0.29
VPS35-202ENST00000561713 LINC00588Q9Y4M8 146 aa13.24□□□□□ -0.29
VPS35-202ENST00000561713 A0A0J9YY99 117 aa13.23□□□□□ -0.29
VPS35-202ENST00000561713 GAGE12BA1L429 117 aa13.23□□□□□ -0.29
VPS35-202ENST00000561713 GAGE7O76087 117 aa13.23□□□□□ -0.29
VPS35-202ENST00000561713 GAGE12FP0CL80 117 aa13.23□□□□□ -0.29
VPS35-202ENST00000561713 GAGE12GP0CL81 117 aa13.23□□□□□ -0.29
VPS35-202ENST00000561713 GAGE12IP0CL82 117 aa13.23□□□□□ -0.29
VPS35-202ENST00000561713 IL15RAQ13261 267 aa13.23□□□□□ -0.29
VPS35-202ENST00000561713 OR5I1Q13606 314 aa13.23□□□□□ -0.29
VPS35-202ENST00000561713 TRAV26-1A0A087WT03 109 aa13.22□□□□□ -0.29
VPS35-202ENST00000561713 SIX6O95475 246 aa13.22□□□□□ -0.29
VPS35-202ENST00000561713 HOXA5P20719 270 aa13.22□□□□□ -0.29
VPS35-202ENST00000561713 LEPP41159 167 aa13.22□□□□□ -0.29
VPS35-202ENST00000561713 RPL29P47914 159 aaKnown RBP13.22□□□□□ -0.29
VPS35-202ENST00000561713 Q8N1X5 172 aa13.22□□□□□ -0.29
VPS35-202ENST00000561713 THAP6Q8TBB0 222 aa13.22□□□□□ -0.29
VPS35-202ENST00000561713 BLNKQ8WV28 456 aa13.22□□□□□ -0.29
VPS35-202ENST00000561713 C20orf144Q9BQM9 153 aa13.22□□□□□ -0.29
VPS35-202ENST00000561713 TRBV19A0A075B6N1 114 aa13.21□□□□□ -0.29
VPS35-202ENST00000561713 SNURFLB1AK76 121 aa13.21□□□□□ -0.29
VPS35-202ENST00000561713 NDUFB4O95168 129 aa13.21□□□□□ -0.29
VPS35-202ENST00000561713 S100A11P31949 105 aa13.21□□□□□ -0.29
VPS35-202ENST00000561713 HBG1P69891 147 aa13.21□□□□□ -0.29
VPS35-202ENST00000561713 HBG2P69892 147 aa13.21□□□□□ -0.29
VPS35-202ENST00000561713 BTN1A1Q13410 526 aa13.21□□□□□ -0.29
VPS35-202ENST00000561713 CLINT1Q14677 625 aa13.21□□□□□ -0.29
VPS35-202ENST00000561713 SSX7Q7RTT5 188 aa13.21□□□□□ -0.29
VPS35-202ENST00000561713 CCDC28AQ8IWP9 274 aa13.21□□□□□ -0.29
VPS35-202ENST00000561713 EXOC3-AS1Q8N2X6 119 aa13.21□□□□□ -0.29
VPS35-202ENST00000561713 LINC00612Q8N6U2 182 aa13.21□□□□□ -0.29
VPS35-202ENST00000561713 NPCDR1Q9BY65 106 aa13.21□□□□□ -0.29
VPS35-202ENST00000561713 TMPRSS5Q9H3S3 457 aa13.21□□□□□ -0.29
VPS35-202ENST00000561713 RLN2P04090 185 aa13.2□□□□□ -0.3
VPS35-202ENST00000561713 CCL18P55774 89 aa13.2□□□□□ -0.3
VPS35-202ENST00000561713 GUK1Q16774 197 aa13.2□□□□□ -0.3
VPS35-202ENST00000561713 LRRC37A5PQ49AS3 106 aa13.2□□□□□ -0.3
VPS35-202ENST00000561713 Q6ZTI0 123 aa13.2□□□□□ -0.3
VPS35-202ENST00000561713 ODF3Q96PU9 254 aa13.2□□□□□ -0.3
VPS35-202ENST00000561713 NDUFA13Q9P0J0 144 aa13.2□□□□□ -0.3
VPS35-202ENST00000561713 IGKV2-40A0A087WW87 121 aaPredicted RBP13.19□□□□□ -0.3
VPS35-202ENST00000561713 IGKV2D-40P01614 121 aaPredicted RBP13.19□□□□□ -0.3
VPS35-202ENST00000561713 NHLH2Q02577 135 aa13.19□□□□□ -0.3
VPS35-202ENST00000561713 GNPNAT1Q96EK6 184 aaPredicted RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms