RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 MEGF9Q9H1U4 602 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 LINC00574Q9H8X3 128 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 OR4C46A6NHA9 309 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 OR11H12B2RN74 326 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 I3L2K1 104 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 PDE6DO43924 150 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 TOMM40O96008 361 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 FOSL1P15407 271 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 ADMP35318 185 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 CFHR3Q02985 330 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 ZNF343Q6P1L6 599 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 FAM159AQ6UWV7 190 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 SMCO4Q9NRQ5 59 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 YTHDF2Q9Y5A9 579 aaKnown RBP4.22□□□□□ -1.73
VPS13C-209ENST00000560637 TMEM189A5PLL7 270 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 ISLRO14498 428 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 CD7P09564 240 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 EDN2P20800 178 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 PAX2Q02962 417 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 IL15RAQ13261 267 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 MBD6Q96DN6 1003 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 NAT8Q9UHE5 227 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 LOC389332A0A1B0GUA5 103 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 LGALS1P09382 135 aaKnown RBP4.22□□□□□ -1.73
VPS13C-209ENST00000560637 STAG3L2P0CL84 134 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 STAG3L3P0CL85 134 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 LYL1P12980 280 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 NUTF2P61970 127 aaKnown RBP4.22□□□□□ -1.73
VPS13C-209ENST00000560637 PSG9Q00887 426 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 TWIST1Q15672 202 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 NRN1Q9NPD7 142 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 BIN3Q9NQY0 253 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 KLK9Q9UKQ9 250 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 PHLDA3Q9Y5J5 127 aa4.22□□□□□ -1.73
VPS13C-209ENST00000560637 LOC102723971A0A1B0GUV8 181 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 DEFB4AO15263 64 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 CRLF1O75462 422 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 ZNF726P1Q15940 193 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 ZNF124Q15973 351 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 TMEM183BQ1AE95 376 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 SMUG1Q53HV7 270 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 LCN12Q6JVE5 192 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 TMEM183AQ8IXX5 376 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 TMEM75Q8N9X5 138 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 ZNF502Q8TBZ5 544 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 VN1R17PQ8TDU5 208 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 CCDC140Q96MF4 163 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 EPDR1Q9UM22 224 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 NSD1Q96L73 2696 aaPredicted RBP4.21□□□□□ -1.74
VPS13C-209ENST00000560637 IGKV3OR2-268A0A0C4DH90 116 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 DEFB130BP0DP73 79 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 DEFB130AP0DP74 79 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 HILS1P60008 231 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 RAB5BP61020 215 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 TMEM61Q8N0U2 210 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 PIFOQ8TCI5 191 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 TMEM158Q8WZ71 300 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 PRR25Q96S07 402 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 SHANK2-AS3Q9BTD1 123 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 C19orf24Q9BVV8 132 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 ZNF702PQ9H963 129 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 PSG8Q9UQ74 426 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 CSMD1Q96PZ7 3565 aa4.21□□□□□ -1.74
VPS13C-209ENST00000560637 TRGV2A0A075B6R0 118 aa4.2□□□□□ -1.74
VPS13C-209ENST00000560637 S100A9P06702 114 aaKnown RBP4.2□□□□□ -1.74
VPS13C-209ENST00000560637 CBLN1P23435 193 aa4.2□□□□□ -1.74
VPS13C-209ENST00000560637 FOXA3P55318 350 aaPredicted RBP4.2□□□□□ -1.74
VPS13C-209ENST00000560637 TCTAP57738 103 aa4.2□□□□□ -1.74
VPS13C-209ENST00000560637 CD300EQ496F6 205 aaPredicted RBP4.2□□□□□ -1.74
VPS13C-209ENST00000560637 FBN2P35556 2912 aa4.2□□□□□ -1.74
VPS13C-209ENST00000560637 IGLL1P15814 213 aa4.2□□□□□ -1.74
VPS13C-209ENST00000560637 CT83Q5H943 113 aa4.2□□□□□ -1.74
VPS13C-209ENST00000560637 ATRAIDQ6UW56 229 aa4.2□□□□□ -1.74
VPS13C-209ENST00000560637 PATE2Q6UY27 113 aa4.2□□□□□ -1.74
VPS13C-209ENST00000560637 WFDC10AQ9H1F0 79 aa4.2□□□□□ -1.74
VPS13C-209ENST00000560637 PRELID1Q9Y255 219 aa4.2□□□□□ -1.74
VPS13C-209ENST00000560637 TET2Q6N021 2002 aaPredicted RBP4.2□□□□□ -1.74
VPS13C-209ENST00000560637 FAM74A7A6NL05 159 aa4.2□□□□□ -1.74
VPS13C-209ENST00000560637 SNURFLB1AK76 121 aa4.2□□□□□ -1.74
VPS13C-209ENST00000560637 C9JQL5 133 aa4.2□□□□□ -1.74
VPS13C-209ENST00000560637 SRP19P09132 144 aaKnown RBP4.2□□□□□ -1.74
VPS13C-209ENST00000560637 FOXE3Q13461 319 aa4.2□□□□□ -1.74
VPS13C-209ENST00000560637 EIF4EBP1Q13541 118 aaPredicted RBP4.2□□□□□ -1.74
VPS13C-209ENST00000560637 OR9G4Q8NGQ1 327 aa4.2□□□□□ -1.74
VPS13C-209ENST00000560637 OCC1Q8TAD7 63 aa4.2□□□□□ -1.74
VPS13C-209ENST00000560637 IGHV7-4-1A0A0J9YVY3 117 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 H3BVH4 76 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 NDUFA4O00483 81 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 FSTL3O95633 263 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 PMCHP20382 165 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 FAM74A3Q4VXF1 159 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 LINC00482Q8N8I6 264 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 ZNF586Q9NXT0 402 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 SMPXQ9UHP9 88 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 B4DEV8 164 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 GGTLC3B5MD39 225 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 TCRAP04437 139 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 RAB4AP20338 218 aa4.19□□□□□ -1.74
VPS13C-209ENST00000560637 YPEL3P61236 119 aaPredicted RBP4.19□□□□□ -1.74
VPS13C-209ENST00000560637 ZNF56Q15929 161 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms