RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 IGKV3-20P01619 116 aa9.48□□□□□ -0.89
NEDD8-208ENST00000560427 STAG3L2P0CL84 134 aa9.48□□□□□ -0.89
NEDD8-208ENST00000560427 STAG3L3P0CL85 134 aa9.48□□□□□ -0.89
NEDD8-208ENST00000560427 AMTNQ6UX39 209 aa9.48□□□□□ -0.89
NEDD8-208ENST00000560427 OR10J6PQ8NGY7 276 aa9.48□□□□□ -0.89
NEDD8-208ENST00000560427 BLNKQ8WV28 456 aa9.48□□□□□ -0.89
NEDD8-208ENST00000560427 ZNF503Q96F45 646 aa9.48□□□□□ -0.89
NEDD8-208ENST00000560427 HYLS1Q96M11 299 aa9.48□□□□□ -0.89
NEDD8-208ENST00000560427 RARRES2Q99969 163 aa9.48□□□□□ -0.89
NEDD8-208ENST00000560427 ACTR3CQ9C0K3 210 aaPredicted RBP9.48□□□□□ -0.89
NEDD8-208ENST00000560427 C11orf68Q9H3H3 251 aaKnown RBP9.48□□□□□ -0.89
NEDD8-208ENST00000560427 hCG_2014768A0A024R1R8 64 aa9.47□□□□□ -0.89
NEDD8-208ENST00000560427 BOLA2-SMG1P6H3BVE0 249 aa9.47□□□□□ -0.89
NEDD8-208ENST00000560427 PFDN1O60925 122 aa9.47□□□□□ -0.89
NEDD8-208ENST00000560427 AKR1C8PQ5T2L2 129 aa9.47□□□□□ -0.89
NEDD8-208ENST00000560427 OR11H2Q8NH07 326 aa9.47□□□□□ -0.89
NEDD8-208ENST00000560427 IL17DQ8TAD2 202 aa9.47□□□□□ -0.89
NEDD8-208ENST00000560427 RAB24Q969Q5 203 aa9.47□□□□□ -0.89
NEDD8-208ENST00000560427 ODF3Q96PU9 254 aa9.47□□□□□ -0.89
NEDD8-208ENST00000560427 CXorf1O96002 111 aa9.46□□□□□ -0.9
NEDD8-208ENST00000560427 SEC11BP0C7V7 166 aa9.46□□□□□ -0.9
NEDD8-208ENST00000560427 MIFP14174 115 aa9.46□□□□□ -0.9
NEDD8-208ENST00000560427 FAM74A1Q5RGS3 127 aa9.46□□□□□ -0.9
NEDD8-208ENST00000560427 ZNF705AQ6ZN79 300 aaPredicted RBP9.46□□□□□ -0.9
NEDD8-208ENST00000560427 TMUB2Q71RG4 321 aa9.46□□□□□ -0.9
NEDD8-208ENST00000560427 ARL6IP6Q8N6S5 226 aa9.46□□□□□ -0.9
NEDD8-208ENST00000560427 STOML3Q8TAV4 291 aa9.46□□□□□ -0.9
NEDD8-208ENST00000560427 PHYHIPLQ96FC7 376 aa9.46□□□□□ -0.9
NEDD8-208ENST00000560427 IGF2BP2-AS1Q96M15 143 aa9.46□□□□□ -0.9
NEDD8-208ENST00000560427 NEU1Q99519 415 aa9.46□□□□□ -0.9
NEDD8-208ENST00000560427 ZNF471Q9BX82 626 aaPredicted RBP9.46□□□□□ -0.9
NEDD8-208ENST00000560427 SLC35B3Q9H1N7 401 aa9.46□□□□□ -0.9
NEDD8-208ENST00000560427 PPP1R14DQ9NXH3 145 aa9.46□□□□□ -0.9
NEDD8-208ENST00000560427 XCL2Q9UBD3 114 aa9.46□□□□□ -0.9
NEDD8-208ENST00000560427 AGRNO00468 2067 aa9.45□□□□□ -0.9
NEDD8-208ENST00000560427 CTXND1A0A1B0GTU2 59 aa9.45□□□□□ -0.9
NEDD8-208ENST00000560427 SMIM9A6NGZ8 99 aa9.45□□□□□ -0.9
NEDD8-208ENST00000560427 ZNF705FA8MVS1 300 aaPredicted RBP9.45□□□□□ -0.9
NEDD8-208ENST00000560427 UMAD1C9J7I0 102 aa9.45□□□□□ -0.9
NEDD8-208ENST00000560427 NPIPB6E9PJ23 425 aa9.45□□□□□ -0.9
NEDD8-208ENST00000560427 M0R3E3 92 aa9.45□□□□□ -0.9
NEDD8-208ENST00000560427 INSP01308 110 aa9.45□□□□□ -0.9
NEDD8-208ENST00000560427 ARL14EPLP0DKL9 152 aa9.45□□□□□ -0.9
NEDD8-208ENST00000560427 TPT1P13693 172 aaKnown RBP9.45□□□□□ -0.9
NEDD8-208ENST00000560427 TSPOP30536 169 aa9.45□□□□□ -0.9
NEDD8-208ENST00000560427 CSN1S1P47710 185 aa9.45□□□□□ -0.9
NEDD8-208ENST00000560427 ICAM4Q14773 271 aa9.45□□□□□ -0.9
NEDD8-208ENST00000560427 EXOC3-AS1Q8N2X6 119 aa9.45□□□□□ -0.9
NEDD8-208ENST00000560427 SUN5Q8TC36 379 aa9.45□□□□□ -0.9
NEDD8-208ENST00000560427 RXFP4Q8TDU9 374 aa9.45□□□□□ -0.9
NEDD8-208ENST00000560427 Q9H3A6 140 aa9.45□□□□□ -0.9
NEDD8-208ENST00000560427 TMEM167BQ9NRX6 74 aa9.45□□□□□ -0.9
NEDD8-208ENST00000560427 GOLT1BQ9Y3E0 138 aa9.45□□□□□ -0.9
NEDD8-208ENST00000560427 NBEAL2Q6ZNJ1 2754 aa9.44□□□□□ -0.9
NEDD8-208ENST00000560427 PRAC2D3DTV9 90 aa9.44□□□□□ -0.9
NEDD8-208ENST00000560427 C3orf84H3BNL1 204 aa9.44□□□□□ -0.9
NEDD8-208ENST00000560427 SLC25A5P05141 298 aaKnown RBP9.44□□□□□ -0.9
NEDD8-208ENST00000560427 ZNF705DP0CH99 300 aaPredicted RBP9.44□□□□□ -0.9
NEDD8-208ENST00000560427 ZNF705BP0CI00 300 aaPredicted RBP9.44□□□□□ -0.9
NEDD8-208ENST00000560427 CDKN1BP46527 198 aa9.44□□□□□ -0.9
NEDD8-208ENST00000560427 RANP62826 216 aaKnown RBP9.44□□□□□ -0.9
NEDD8-208ENST00000560427 EIF5AL1Q6IS14 154 aaKnown RBP9.44□□□□□ -0.9
NEDD8-208ENST00000560427 DPPA3Q6W0C5 159 aa9.44□□□□□ -0.9
NEDD8-208ENST00000560427 BAP18Q8IXM2 172 aa9.44□□□□□ -0.9
NEDD8-208ENST00000560427 MUC7Q8TAX7 377 aa9.44□□□□□ -0.9
NEDD8-208ENST00000560427 LINC00477Q96M19 166 aa9.44□□□□□ -0.9
NEDD8-208ENST00000560427 OTORQ9NRC9 128 aa9.44□□□□□ -0.9
NEDD8-208ENST00000560427 X6R8D5 127 aa9.44□□□□□ -0.9
NEDD8-208ENST00000560427 A0A0J9YWU9 116 aa9.43□□□□□ -0.9
NEDD8-208ENST00000560427 RBAKDNA6NC62 111 aa9.43□□□□□ -0.9
NEDD8-208ENST00000560427 GCHFRP30047 84 aa9.43□□□□□ -0.9
NEDD8-208ENST00000560427 LEPP41159 167 aa9.43□□□□□ -0.9
NEDD8-208ENST00000560427 FXYD7P58549 80 aa9.43□□□□□ -0.9
NEDD8-208ENST00000560427 SPINK13Q1W4C9 94 aa9.43□□□□□ -0.9
NEDD8-208ENST00000560427 ZFP69Q49AA0 526 aa9.43□□□□□ -0.9
NEDD8-208ENST00000560427 C9orf47Q6ZRZ4 202 aa9.43□□□□□ -0.9
NEDD8-208ENST00000560427 Q8NAQ8 132 aa9.43□□□□□ -0.9
NEDD8-208ENST00000560427 CMTM2Q8TAZ6 248 aa9.43□□□□□ -0.9
NEDD8-208ENST00000560427 C20orf144Q9BQM9 153 aa9.43□□□□□ -0.9
NEDD8-208ENST00000560427 TRBV7-9A0A0J9YWB2 115 aa9.42□□□□□ -0.9
NEDD8-208ENST00000560427 M0R2Z0 102 aa9.42□□□□□ -0.9
NEDD8-208ENST00000560427 HMGB3O15347 200 aaKnown RBP9.42□□□□□ -0.9
NEDD8-208ENST00000560427 CRXO43186 299 aaPredicted RBP9.42□□□□□ -0.9
NEDD8-208ENST00000560427 LGALSLQ3ZCW2 172 aaPredicted RBP9.42□□□□□ -0.9
NEDD8-208ENST00000560427 TMEM256Q8N2U0 113 aa9.42□□□□□ -0.9
NEDD8-208ENST00000560427 IGHV4-28A0A0C4DH34 117 aa9.41□□□□□ -0.9
NEDD8-208ENST00000560427 SERTM2A0A1B0GWG4 89 aa9.41□□□□□ -0.9
NEDD8-208ENST00000560427 TMEM189A5PLL7 270 aa9.41□□□□□ -0.9
NEDD8-208ENST00000560427 EIF3GO75821 320 aaKnown RBP eCLIP9.41□□□□□ -0.9
NEDD8-208ENST00000560427 NMBP08949 121 aa9.41□□□□□ -0.9
NEDD8-208ENST00000560427 ZNF726P1Q15940 193 aa9.41□□□□□ -0.9
NEDD8-208ENST00000560427 TMEM78Q5T7P6 136 aa9.41□□□□□ -0.9
NEDD8-208ENST00000560427 SSX7Q7RTT5 188 aa9.41□□□□□ -0.9
NEDD8-208ENST00000560427 SLC51BQ86UW2 128 aa9.41□□□□□ -0.9
NEDD8-208ENST00000560427 C1orf158Q8N1D5 194 aa9.41□□□□□ -0.9
NEDD8-208ENST00000560427 TMED6Q8WW62 240 aa9.41□□□□□ -0.9
NEDD8-208ENST00000560427 TMEM208Q9BTX3 173 aa9.41□□□□□ -0.9
NEDD8-208ENST00000560427 A0A1B0GVG6 124 aa9.4□□□□□ -0.9
NEDD8-208ENST00000560427 A0A1W2PRE2 83 aa9.4□□□□□ -0.9
NEDD8-208ENST00000560427 MAP1LC3B2A6NCE7 125 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms